Literature DB >> 21837057

2-{1-[2,8-Bis(trifluoro-meth-yl)quinolin-4-yl]-3,5,6,7,8,8a-hexa-hydro-1H-1,3-oxazolo[3,4-a]pyridin-3-yl}phenol.

Raoni S B Gonçalves, Carlos R Kaiser, Marcus V N de Souza, James L Wardell, Solange M S V Wardell, Edward R T Tiekink.   

Abstract

In the title mefloquine-oxazolidine derivative, C(24)H(20)F(6)N(2)O(2), the oxazoline ring adopts an envelope conformation (the flap atom is N) and the piperidine ring has a chair conformation. The oxazoline and benzene residues lie away from the C(6) ring of the quinoline group and, to a first approximation, to one side of the plane through the ten atoms (r.m.s. deviation = 0.025 Å). An intra-molecular O-H⋯N(piperidine) hydrogen bond is present. The crystal packing features C-H⋯O, C-H⋯F and C-H⋯π(hy-droxy-benzene) inter-actions.

Entities:  

Year:  2011        PMID: 21837057      PMCID: PMC3151884          DOI: 10.1107/S1600536811022379

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the anti-mycobacterial activities of quinoline derivatives related to mefloquine, see: Gonçalves et al. (2010 ▶). For additional geometric analysis, see: Cremer & Pople (1975 ▶); Spek (2009 ▶).

Experimental

Crystal data

C24H20F6N2O2 M = 482.42 Orthorhombic, a = 27.2766 (11) Å b = 34.1005 (9) Å c = 9.4431 (2) Å V = 8783.5 (5) Å3 Z = 16 Mo Kα radiation μ = 0.13 mm−1 T = 120 K 0.40 × 0.20 × 0.16 mm

Data collection

Enraf–Nonius KappaCCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2007 ▶) T min = 0.799, T max = 1.000 13970 measured reflections 2660 independent reflections 2519 reflections with I > 2σ(I) R int = 0.043

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.082 S = 1.10 2660 reflections 308 parameters 1 restraint H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.24 e Å−3 Data collection: COLLECT (Hooft, 1998 ▶); cell refinement: DENZO (Otwinowski & Minor, 1997 ▶) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811022379/hb5905sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811022379/hb5905Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H20F6N2O2F(000) = 3968
Mr = 482.42Dx = 1.459 Mg m3
Orthorhombic, Fdd2Mo Kα radiation, λ = 0.71073 Å
Hall symbol: F 2 -2dCell parameters from 11047 reflections
a = 27.2766 (11) Åθ = 2.9–27.5°
b = 34.1005 (9) ŵ = 0.13 mm1
c = 9.4431 (2) ÅT = 120 K
V = 8783.5 (5) Å3Block, colourless
Z = 160.40 × 0.20 × 0.16 mm
Enraf–Nonius KappaCCD diffractometer2660 independent reflections
Radiation source: Enraf–Nonius FR591 rotating anode2519 reflections with I > 2σ(I)
10 cm confocal mirrorsRint = 0.043
Detector resolution: 9.091 pixels mm-1θmax = 27.5°, θmin = 3.2°
φ and ω scansh = −35→32
Absorption correction: multi-scan (SADABS; Sheldrick, 2007)k = −44→32
Tmin = 0.799, Tmax = 1.000l = −11→12
13970 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.035H-atom parameters constrained
wR(F2) = 0.082w = 1/[σ2(Fo2) + (0.0295P)2 + 15.365P] where P = (Fo2 + 2Fc2)/3
S = 1.10(Δ/σ)max = 0.001
2660 reflectionsΔρmax = 0.20 e Å3
308 parametersΔρmin = −0.24 e Å3
1 restraintAbsolute structure: nd
Primary atom site location: structure-invariant direct methods
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F10.98349 (6)0.85851 (4)0.25475 (17)0.0325 (3)
F21.03760 (5)0.81329 (5)0.22731 (16)0.0352 (4)
F30.96194 (6)0.80141 (5)0.18235 (15)0.0332 (4)
F40.83400 (6)0.81192 (5)0.47423 (18)0.0387 (4)
F50.85056 (6)0.75173 (5)0.4262 (2)0.0435 (4)
F60.79918 (6)0.76574 (6)0.59082 (19)0.0433 (4)
O11.10450 (6)0.78733 (5)0.67372 (18)0.0214 (3)
O21.10905 (7)0.87646 (6)0.4756 (2)0.0331 (4)
H2O1.09680.87200.55560.050*
N10.93890 (7)0.79834 (6)0.4583 (2)0.0203 (4)
N21.10727 (7)0.85110 (6)0.7433 (2)0.0226 (4)
C10.98410 (8)0.80770 (6)0.4242 (2)0.0187 (4)
C21.02460 (8)0.80730 (6)0.5156 (2)0.0198 (4)
H21.05630.81390.48160.024*
C31.01759 (8)0.79725 (6)0.6548 (2)0.0176 (4)
C40.96894 (8)0.78816 (6)0.7003 (2)0.0189 (4)
C50.95739 (9)0.77823 (7)0.8426 (3)0.0214 (5)
H50.98240.77860.91250.026*
C60.91067 (9)0.76812 (7)0.8798 (3)0.0233 (5)
H60.90340.76160.97530.028*
C70.87321 (9)0.76741 (7)0.7767 (3)0.0242 (5)
H70.84090.76000.80330.029*
C80.88277 (8)0.77726 (7)0.6394 (3)0.0212 (5)
C90.93106 (8)0.78838 (6)0.5973 (2)0.0186 (4)
C100.99188 (8)0.82002 (7)0.2718 (3)0.0236 (5)
C110.84193 (9)0.77694 (8)0.5328 (3)0.0273 (5)
C121.06091 (8)0.79426 (7)0.7548 (2)0.0201 (4)
H121.05560.77190.82180.024*
C131.13849 (8)0.81902 (7)0.6950 (3)0.0231 (5)
H131.16260.81190.77070.028*
C141.07232 (8)0.83156 (7)0.8391 (3)0.0224 (5)
H141.09020.82390.92730.027*
C151.03185 (9)0.85983 (7)0.8790 (3)0.0257 (5)
H15A1.00800.84670.94220.031*
H15B1.01430.86870.79300.031*
C161.05498 (10)0.89492 (8)0.9549 (3)0.0313 (6)
H16A1.02940.91470.97500.038*
H16B1.06900.88621.04630.038*
C171.09526 (10)0.91343 (8)0.8645 (3)0.0341 (6)
H17A1.08030.92580.78010.041*
H17B1.11190.93420.91980.041*
C181.13303 (9)0.88317 (8)0.8172 (3)0.0310 (6)
H18A1.15720.89550.75280.037*
H18B1.15080.87270.90040.037*
C191.16494 (9)0.82626 (7)0.5575 (3)0.0262 (5)
C201.14874 (9)0.85282 (7)0.4556 (3)0.0287 (5)
C211.17304 (11)0.85539 (8)0.3246 (3)0.0372 (7)
H211.16180.87340.25500.045*
C221.21281 (12)0.83207 (9)0.2970 (4)0.0431 (7)
H221.22910.83410.20830.052*
C231.22951 (11)0.80566 (9)0.3970 (4)0.0417 (7)
H231.25700.78950.37700.050*
C241.20596 (10)0.80299 (8)0.5263 (3)0.0331 (6)
H241.21780.78510.59530.040*
U11U22U33U12U13U23
F10.0439 (9)0.0275 (8)0.0262 (8)0.0023 (6)−0.0006 (7)0.0088 (6)
F20.0274 (7)0.0554 (10)0.0227 (8)0.0085 (7)0.0077 (6)0.0121 (7)
F30.0377 (9)0.0460 (9)0.0160 (7)−0.0085 (7)−0.0028 (6)−0.0014 (7)
F40.0344 (8)0.0471 (9)0.0347 (9)0.0040 (7)−0.0083 (7)0.0118 (8)
F50.0339 (8)0.0578 (11)0.0387 (9)−0.0042 (8)−0.0057 (8)−0.0217 (9)
F60.0202 (7)0.0723 (12)0.0373 (10)−0.0094 (7)0.0010 (7)0.0083 (9)
O10.0193 (8)0.0214 (7)0.0236 (8)−0.0016 (6)−0.0005 (7)−0.0004 (7)
O20.0363 (10)0.0313 (9)0.0316 (10)0.0013 (8)0.0036 (8)0.0049 (8)
N10.0217 (9)0.0222 (9)0.0170 (10)−0.0002 (7)0.0003 (8)−0.0004 (7)
N20.0221 (9)0.0236 (9)0.0222 (10)−0.0038 (7)−0.0015 (8)−0.0026 (8)
C10.0217 (11)0.0182 (10)0.0162 (10)0.0003 (8)0.0000 (9)0.0001 (8)
C20.0211 (10)0.0186 (10)0.0196 (11)−0.0006 (8)0.0007 (9)0.0009 (9)
C30.0197 (10)0.0155 (9)0.0175 (11)−0.0002 (8)−0.0019 (8)−0.0010 (8)
C40.0218 (10)0.0166 (9)0.0184 (11)0.0000 (8)0.0015 (9)0.0014 (9)
C50.0266 (12)0.0213 (11)0.0164 (11)0.0000 (9)0.0002 (9)0.0009 (9)
C60.0270 (12)0.0240 (11)0.0188 (11)0.0036 (9)0.0044 (9)0.0026 (9)
C70.0213 (11)0.0238 (11)0.0275 (12)0.0017 (9)0.0054 (10)0.0017 (10)
C80.0205 (11)0.0217 (11)0.0215 (11)−0.0003 (9)0.0005 (9)−0.0002 (9)
C90.0205 (10)0.0173 (10)0.0180 (11)−0.0002 (8)0.0013 (9)−0.0008 (8)
C100.0233 (11)0.0278 (12)0.0197 (11)−0.0008 (9)−0.0010 (10)0.0005 (10)
C110.0210 (11)0.0351 (13)0.0257 (12)−0.0012 (10)0.0014 (10)−0.0002 (10)
C120.0205 (10)0.0209 (10)0.0189 (11)−0.0018 (8)−0.0006 (9)0.0014 (9)
C130.0192 (10)0.0248 (11)0.0252 (13)−0.0023 (8)−0.0043 (9)0.0010 (9)
C140.0223 (11)0.0273 (11)0.0175 (11)−0.0033 (9)−0.0035 (9)−0.0019 (9)
C150.0280 (12)0.0258 (12)0.0232 (12)−0.0033 (9)0.0013 (10)−0.0053 (10)
C160.0319 (13)0.0308 (13)0.0311 (14)−0.0035 (10)0.0018 (11)−0.0109 (11)
C170.0362 (14)0.0282 (13)0.0379 (15)−0.0092 (10)0.0037 (12)−0.0117 (11)
C180.0281 (12)0.0311 (13)0.0338 (14)−0.0078 (10)−0.0015 (11)−0.0068 (11)
C190.0237 (12)0.0261 (12)0.0287 (13)−0.0051 (9)0.0027 (10)−0.0030 (10)
C200.0310 (13)0.0243 (11)0.0307 (14)−0.0067 (9)0.0035 (11)−0.0017 (10)
C210.0514 (17)0.0286 (13)0.0316 (15)−0.0107 (12)0.0096 (13)0.0003 (12)
C220.0508 (17)0.0393 (16)0.0391 (17)−0.0136 (13)0.0220 (14)−0.0087 (13)
C230.0344 (15)0.0373 (15)0.0535 (19)−0.0066 (13)0.0163 (14)−0.0119 (14)
C240.0265 (12)0.0285 (13)0.0444 (16)−0.0030 (10)0.0034 (12)−0.0038 (12)
F1—C101.342 (3)C8—C91.427 (3)
F2—C101.336 (3)C8—C111.502 (3)
F3—C101.336 (3)C12—C141.532 (3)
F4—C111.332 (3)C12—H121.0000
F5—C111.344 (3)C13—C191.506 (3)
F6—C111.344 (3)C13—H131.0000
O1—C121.434 (3)C14—C151.514 (3)
O1—C131.438 (3)C14—H141.0000
O2—C201.363 (3)C15—C161.530 (3)
O2—H2O0.8400C15—H15A0.9900
N1—C11.314 (3)C15—H15B0.9900
N1—C91.372 (3)C16—C171.528 (4)
N2—C131.460 (3)C16—H16A0.9900
N2—C141.473 (3)C16—H16B0.9900
N2—C181.475 (3)C17—C181.525 (4)
C1—C21.401 (3)C17—H17A0.9900
C1—C101.514 (3)C17—H17B0.9900
C2—C31.372 (3)C18—H18A0.9900
C2—H20.9500C18—H18B0.9900
C3—C41.429 (3)C19—C201.393 (4)
C3—C121.516 (3)C19—C241.403 (4)
C4—C91.419 (3)C20—C211.406 (4)
C4—C51.421 (3)C21—C221.370 (4)
C5—C61.366 (3)C21—H210.9500
C5—H50.9500C22—C231.382 (5)
C6—C71.411 (3)C22—H220.9500
C6—H60.9500C23—C241.382 (4)
C7—C81.364 (3)C23—H230.9500
C7—H70.9500C24—H240.9500
C12—O1—C13109.65 (17)N2—C13—C19115.2 (2)
C20—O2—H2O109.5O1—C13—H13110.0
C1—N1—C9116.2 (2)N2—C13—H13110.0
C13—N2—C14103.32 (18)C19—C13—H13110.0
C13—N2—C18115.18 (19)N2—C14—C15109.69 (19)
C14—N2—C18110.72 (19)N2—C14—C12100.86 (18)
N1—C1—C2125.9 (2)C15—C14—C12120.68 (19)
N1—C1—C10115.6 (2)N2—C14—H14108.3
C2—C1—C10118.5 (2)C15—C14—H14108.3
C3—C2—C1118.8 (2)C12—C14—H14108.3
C3—C2—H2120.6C14—C15—C16108.3 (2)
C1—C2—H2120.6C14—C15—H15A110.0
C2—C3—C4118.1 (2)C16—C15—H15A110.0
C2—C3—C12120.3 (2)C14—C15—H15B110.0
C4—C3—C12121.48 (19)C16—C15—H15B110.0
C9—C4—C5119.2 (2)H15A—C15—H15B108.4
C9—C4—C3118.0 (2)C17—C16—C15111.0 (2)
C5—C4—C3122.8 (2)C17—C16—H16A109.4
C6—C5—C4120.7 (2)C15—C16—H16A109.4
C6—C5—H5119.7C17—C16—H16B109.4
C4—C5—H5119.7C15—C16—H16B109.4
C5—C6—C7120.1 (2)H16A—C16—H16B108.0
C5—C6—H6119.9C18—C17—C16111.7 (2)
C7—C6—H6119.9C18—C17—H17A109.3
C8—C7—C6120.8 (2)C16—C17—H17A109.3
C8—C7—H7119.6C18—C17—H17B109.3
C6—C7—H7119.6C16—C17—H17B109.3
C7—C8—C9120.4 (2)H17A—C17—H17B107.9
C7—C8—C11119.6 (2)N2—C18—C17108.6 (2)
C9—C8—C11120.0 (2)N2—C18—H18A110.0
N1—C9—C4122.9 (2)C17—C18—H18A110.0
N1—C9—C8118.4 (2)N2—C18—H18B110.0
C4—C9—C8118.7 (2)C17—C18—H18B110.0
F3—C10—F2106.9 (2)H18A—C18—H18B108.4
F3—C10—F1106.50 (19)C20—C19—C24118.4 (2)
F2—C10—F1106.81 (19)C20—C19—C13123.4 (2)
F3—C10—C1112.58 (19)C24—C19—C13118.1 (2)
F2—C10—C1112.49 (19)O2—C20—C19122.7 (2)
F1—C10—C1111.2 (2)O2—C20—C21117.4 (2)
F4—C11—F6106.4 (2)C19—C20—C21119.9 (2)
F4—C11—F5106.9 (2)C22—C21—C20120.3 (3)
F6—C11—F5106.0 (2)C22—C21—H21119.9
F4—C11—C8113.1 (2)C20—C21—H21119.9
F6—C11—C8111.8 (2)C21—C22—C23120.6 (3)
F5—C11—C8112.1 (2)C21—C22—H22119.7
O1—C12—C3108.97 (18)C23—C22—H22119.7
O1—C12—C14104.21 (17)C22—C23—C24119.5 (3)
C3—C12—C14115.21 (19)C22—C23—H23120.2
O1—C12—H12109.4C24—C23—H23120.2
C3—C12—H12109.4C23—C24—C19121.2 (3)
C14—C12—H12109.4C23—C24—H24119.4
O1—C13—N2103.34 (18)C19—C24—H24119.4
O1—C13—C19108.15 (19)
C9—N1—C1—C21.9 (3)C2—C3—C12—O1−23.2 (3)
C9—N1—C1—C10−177.92 (19)C4—C3—C12—O1154.04 (19)
N1—C1—C2—C3−1.7 (3)C2—C3—C12—C1493.5 (3)
C10—C1—C2—C3178.2 (2)C4—C3—C12—C14−89.3 (3)
C1—C2—C3—C4−0.8 (3)C12—O1—C13—N2−21.6 (2)
C1—C2—C3—C12176.54 (19)C12—O1—C13—C19−144.21 (19)
C2—C3—C4—C92.7 (3)C14—N2—C13—O140.1 (2)
C12—C3—C4—C9−174.6 (2)C18—N2—C13—O1160.9 (2)
C2—C3—C4—C5−178.6 (2)C14—N2—C13—C19157.82 (19)
C12—C3—C4—C54.1 (3)C18—N2—C13—C19−81.3 (3)
C9—C4—C5—C61.5 (3)C13—N2—C14—C15−170.42 (19)
C3—C4—C5—C6−177.2 (2)C18—N2—C14—C1565.7 (2)
C4—C5—C6—C70.0 (4)C13—N2—C14—C12−42.1 (2)
C5—C6—C7—C8−0.9 (4)C18—N2—C14—C12−165.92 (19)
C6—C7—C8—C90.2 (4)O1—C12—C14—N228.6 (2)
C6—C7—C8—C11−178.9 (2)C3—C12—C14—N2−90.8 (2)
C1—N1—C9—C40.3 (3)O1—C12—C14—C15149.4 (2)
C1—N1—C9—C8−178.9 (2)C3—C12—C14—C1530.1 (3)
C5—C4—C9—N1178.7 (2)N2—C14—C15—C16−60.6 (3)
C3—C4—C9—N1−2.6 (3)C12—C14—C15—C16−177.0 (2)
C5—C4—C9—C8−2.1 (3)C14—C15—C16—C1754.6 (3)
C3—C4—C9—C8176.6 (2)C15—C16—C17—C18−53.1 (3)
C7—C8—C9—N1−179.5 (2)C13—N2—C18—C17−178.2 (2)
C11—C8—C9—N1−0.4 (3)C14—N2—C18—C17−61.5 (3)
C7—C8—C9—C41.3 (3)C16—C17—C18—N255.2 (3)
C11—C8—C9—C4−179.6 (2)O1—C13—C19—C2091.1 (3)
N1—C1—C10—F3−32.8 (3)N2—C13—C19—C20−23.9 (3)
C2—C1—C10—F3147.4 (2)O1—C13—C19—C24−84.1 (3)
N1—C1—C10—F2−153.6 (2)N2—C13—C19—C24160.9 (2)
C2—C1—C10—F226.6 (3)C24—C19—C20—O2179.5 (2)
N1—C1—C10—F186.7 (2)C13—C19—C20—O24.3 (4)
C2—C1—C10—F1−93.2 (2)C24—C19—C20—C210.8 (4)
C7—C8—C11—F4119.2 (3)C13—C19—C20—C21−174.4 (2)
C9—C8—C11—F4−59.9 (3)O2—C20—C21—C22−179.1 (3)
C7—C8—C11—F6−0.9 (3)C19—C20—C21—C22−0.4 (4)
C9—C8—C11—F6179.9 (2)C20—C21—C22—C230.2 (5)
C7—C8—C11—F5−119.8 (3)C21—C22—C23—C24−0.4 (5)
C9—C8—C11—F561.0 (3)C22—C23—C24—C190.8 (4)
C13—O1—C12—C3118.85 (19)C20—C19—C24—C23−1.0 (4)
C13—O1—C12—C14−4.6 (2)C13—C19—C24—C23174.4 (2)
Cg1 is the centroid of the benzene ring C19–C24.
D—H···AD—HH···AD···AD—H···A
O2—H2O···N20.841.932.672 (3)146
C6—H6···O1i0.952.523.384 (3)152
C16—H16B···F4ii0.992.473.043 (3)116
C18—H18B···F1ii0.992.543.275 (3)131
C15—H15B···Cg1iii0.992.933.792 (3)146
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the benzene ring C19–C24.

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2o⋯N20.841.932.672 (3)146
C6—H6⋯O1i0.952.523.384 (3)152
C16—H16B⋯F4ii0.992.473.043 (3)116
C18—H18B⋯F1ii0.992.543.275 (3)131
C15—H15BCg1iii0.992.933.792 (3)146

Symmetry codes: (i) ; (ii) ; (iii) .

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1.  Synthesis and antitubercular activity of new mefloquine-oxazolidine derivatives.

Authors:  Raoni S B Gonçalves; Carlos R Kaiser; Maria C S Lourenço; Marcus V N de Souza; James L Wardell; Solange M S V Wardell; Adilson D da Silva
Journal:  Eur J Med Chem       Date:  2010-09-17       Impact factor: 6.514

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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1.  Benzyl 2-{[2,8-bis-(trifluoro-meth-yl)quinolin-4-yl](hy-droxy)meth-yl}piperidine-1-carboxyl-ate.

Authors:  Marcus V N de Souza; Raoni S B Gonçalves; James L Wardell; Solange M S V Wardell; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-16

2.  tert-Butyl 2-{[2,8-bis-(trifluoro-meth-yl)quinolin-4-yl](hy-droxy)meth-yl}piperidine-1-carboxyl-ate.

Authors:  Raoni S B Gonçalves; Marcus V N de Souza; James L Wardell; Solange M S V Wardell; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-16
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