Literature DB >> 22199753

1,3-Dicyclo-hexyl-imidazolidine-2,4,5-trione.

Oualid Talhi, José A Fernandes, Diana C G A Pinto, Artur M S Silva, Filipe A Almeida Paz.   

Abstract

The title compound, C(15)H(22)N(2)O(3), has been isolated as a by-product of an oxidative cleavage of the C-C bond linking two five-membered rings of 1,3-dicyclo-hexyl-5-(3-oxo-2,3-dihydro-benzofuran-2-yl)imidazolidine-2,4-dione. Individual mol-ecular units are engaged in weak C=O⋯C=O inter-actions [O⋯C = 2.814 (10) and 2.871 (11) Å], leading to the formation of supra-molecular chains which close pack, mediated by van der Waals contacts, in the bc plane.

Entities:  

Year:  2011        PMID: 22199753      PMCID: PMC3238900          DOI: 10.1107/S1600536811046253

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of parabanic acid and its derivatives, see: Murray (1957 ▶, 1963 ▶); Ulrichan & Sayigh (1965 ▶); Richter et al. (1984 ▶); Orazi et al. (1977 ▶); Zarzyka-Niemiec & Lubczak (2004 ▶). For biological applications of parabanic acid and its derivatives, see: Ishii et al. (1991 ▶); Kotani et al. (1997 ▶); Sato et al. (2011 ▶). For the synthesis, characterization and biological studies of the title compound, see: Xia et al. (2011 ▶). For general background to crystallographic studies of compounds having biological activity from our research group, see: Fernandes et al. (2010 ▶, 2011 ▶); Loughzail et al. (2011 ▶). For the synthesis of a precursor mol­ecule, see: Talhi et al. (2011 ▶).

Experimental

Crystal data

C15H22N2O3 M = 278.35 Orthorhombic, a = 6.5539 (8) Å b = 11.5029 (15) Å c = 19.524 (3) Å V = 1471.9 (3) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 150 K 0.05 × 0.03 × 0.02 mm

Data collection

Bruker X8 KappaCCD APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1997 ▶) T min = 0.996, T max = 0.998 8292 measured reflections 1558 independent reflections 1028 reflections with I > 2σ(I) R int = 0.047

Refinement

R[F 2 > 2σ(F 2)] = 0.106 wR(F 2) = 0.320 S = 1.06 1558 reflections 181 parameters 72 restraints H-atom parameters constrained Δρmax = 0.74 e Å−3 Δρmin = −0.42 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT-Plus (Bruker, 2005 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: DIAMOND (Brandenburg, 2009 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811046253/tk5010sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811046253/tk5010Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811046253/tk5010Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H22N2O3F(000) = 600
Mr = 278.35Dx = 1.256 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 1312 reflections
a = 6.5539 (8) Åθ = 2.7–19.0°
b = 11.5029 (15) ŵ = 0.09 mm1
c = 19.524 (3) ÅT = 150 K
V = 1471.9 (3) Å3Block, yellow
Z = 40.05 × 0.03 × 0.02 mm
Bruker X8 KappaCCD APEXII diffractometer1558 independent reflections
Radiation source: fine-focus sealed tube1028 reflections with I > 2σ(I)
graphiteRint = 0.047
ω and φ scansθmax = 25.4°, θmin = 3.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 1997)h = −7→7
Tmin = 0.996, Tmax = 0.998k = −13→10
8292 measured reflectionsl = −23→23
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.106H-atom parameters constrained
wR(F2) = 0.320w = 1/[σ2(Fo2) + (0.1747P)2 + 2.7021P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
1558 reflectionsΔρmax = 0.74 e Å3
181 parametersΔρmin = −0.42 e Å3
72 restraintsAbsolute structure: nd
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.2051 (11)0.2826 (7)0.6061 (4)0.0494 (19)
N20.3789 (12)0.4457 (7)0.5865 (5)0.061 (2)
O10.4234 (13)0.3500 (10)0.6889 (4)0.103 (4)
O20.0437 (9)0.2643 (6)0.5014 (4)0.0559 (17)
O30.2667 (13)0.4828 (6)0.4759 (4)0.070 (2)
C10.3461 (15)0.3562 (10)0.6341 (5)0.056 (3)
C20.1559 (11)0.3133 (7)0.5403 (4)0.0366 (18)
C30.2743 (14)0.4269 (7)0.5262 (5)0.046 (2)
C40.128 (2)0.1759 (12)0.6392 (7)0.092 (4)
H40.06080.14630.59670.110*
C5−0.0635 (16)0.1903 (9)0.6766 (5)0.061 (3)
H5A−0.16790.22130.64480.073*
H5B−0.04300.24860.71330.073*
C6−0.143 (2)0.0794 (15)0.7083 (7)0.101 (4)
H6A−0.19450.09890.75450.122*
H6B−0.26150.05390.68080.122*
C7−0.014 (3)−0.0147 (13)0.7150 (8)0.107 (5)
H7A−0.0962−0.08430.70360.128*
H7B0.0191−0.02060.76440.128*
C80.1714 (19)−0.0265 (11)0.6797 (6)0.075 (3)
H8A0.1537−0.08710.64420.091*
H8B0.2753−0.05520.71240.091*
C90.255 (2)0.0814 (9)0.6454 (6)0.078 (3)
H9A0.37750.10630.67120.094*
H9B0.30100.05930.59890.094*
C100.5293 (19)0.5375 (11)0.5983 (8)0.094 (4)
H100.57480.51340.64510.112*
C110.4542 (15)0.6494 (8)0.6151 (5)0.054 (2)
H11A0.37620.64290.65830.065*
H11B0.35680.67290.57890.065*
C120.6092 (17)0.7462 (9)0.6235 (6)0.066 (3)
H12A0.54680.81930.60700.080*
H12B0.63700.75590.67300.080*
C130.8030 (18)0.7306 (10)0.5885 (7)0.080 (3)
H13A0.79860.77950.54680.096*
H13B0.90970.76390.61850.096*
C140.8732 (18)0.6172 (11)0.5677 (7)0.083 (3)
H14A0.97970.59250.60060.099*
H14B0.94050.62580.52260.099*
C150.7265 (14)0.5231 (8)0.5621 (5)0.050 (2)
H15A0.79200.45130.57930.060*
H15B0.69700.51090.51280.060*
U11U22U33U12U13U23
N10.034 (3)0.061 (5)0.054 (4)0.001 (4)0.008 (3)0.011 (4)
N20.034 (4)0.048 (5)0.101 (6)−0.008 (3)−0.002 (4)−0.043 (5)
O10.077 (5)0.183 (10)0.049 (4)0.053 (6)−0.018 (4)−0.041 (5)
O20.043 (3)0.048 (4)0.077 (4)0.003 (3)−0.011 (3)−0.021 (3)
O30.090 (5)0.044 (4)0.075 (4)0.031 (4)0.034 (4)0.019 (3)
C10.041 (5)0.072 (7)0.056 (6)0.014 (5)−0.005 (5)−0.020 (5)
C20.028 (4)0.038 (4)0.044 (4)0.001 (3)−0.007 (3)−0.002 (3)
C30.046 (5)0.027 (4)0.063 (5)0.008 (4)0.007 (5)−0.006 (4)
C40.061 (6)0.097 (8)0.118 (8)0.019 (6)0.030 (6)0.053 (7)
C50.051 (5)0.064 (6)0.066 (5)−0.007 (5)0.015 (4)−0.017 (5)
C60.067 (6)0.137 (9)0.100 (7)−0.004 (7)0.025 (6)0.043 (7)
C70.120 (9)0.078 (7)0.122 (8)−0.027 (7)0.034 (8)−0.003 (7)
C80.073 (6)0.081 (7)0.073 (6)−0.014 (6)−0.005 (5)0.016 (5)
C90.079 (7)0.052 (6)0.103 (7)−0.005 (6)0.035 (6)−0.007 (5)
C100.061 (6)0.075 (7)0.145 (9)−0.023 (6)0.017 (7)−0.046 (7)
C110.049 (5)0.043 (5)0.071 (5)−0.005 (4)0.013 (4)−0.003 (4)
C120.062 (6)0.056 (6)0.080 (6)−0.016 (5)0.011 (5)−0.022 (5)
C130.070 (6)0.054 (6)0.117 (7)−0.020 (5)0.027 (6)−0.001 (6)
C140.050 (5)0.079 (7)0.119 (7)−0.012 (5)0.016 (6)−0.021 (6)
C150.037 (4)0.051 (5)0.061 (5)0.005 (4)0.005 (4)−0.011 (4)
N1—C11.367 (12)C8—C91.512 (16)
N1—C21.372 (10)C8—H8A0.9900
N1—C41.475 (14)C8—H8B0.9900
N2—C31.379 (12)C9—H9A0.9900
N2—C11.404 (14)C9—H9B0.9900
N2—C101.463 (13)C10—C111.416 (15)
O1—C11.185 (11)C10—C151.482 (15)
O2—C21.199 (10)C10—H101.0000
O3—C31.176 (10)C11—C121.516 (13)
C2—C31.544 (12)C11—H11A0.9900
C4—C91.373 (16)C11—H11B0.9900
C4—C51.464 (15)C12—C131.453 (16)
C4—H41.0000C12—H12A0.9900
C5—C61.510 (18)C12—H12B0.9900
C5—H5A0.9900C13—C141.442 (16)
C5—H5B0.9900C13—H13A0.9900
C6—C71.38 (2)C13—H13B0.9900
C6—H6A0.9900C14—C151.452 (14)
C6—H6B0.9900C14—H14A0.9900
C7—C81.405 (19)C14—H14B0.9900
C7—H7A0.9900C15—H15A0.9900
C7—H7B0.9900C15—H15B0.9900
C1—N1—C2111.9 (8)H8A—C8—H8B107.3
C1—N1—C4124.8 (9)C4—C9—C8118.0 (10)
C2—N1—C4123.0 (9)C4—C9—H9A107.8
C3—N2—C1112.0 (7)C8—C9—H9A107.8
C3—N2—C10125.6 (11)C4—C9—H9B107.8
C1—N2—C10121.9 (10)C8—C9—H9B107.8
O1—C1—N1127.8 (12)H9A—C9—H9B107.1
O1—C1—N2125.2 (11)C11—C10—N2117.3 (10)
N1—C1—N2107.0 (7)C11—C10—C15121.0 (10)
O2—C2—N1128.1 (8)N2—C10—C15115.5 (9)
O2—C2—C3126.5 (8)C11—C10—H1098.3
N1—C2—C3105.5 (7)N2—C10—H1098.3
O3—C3—N2130.5 (9)C15—C10—H1098.3
O3—C3—C2126.1 (9)C10—C11—C12117.3 (9)
N2—C3—C2103.3 (7)C10—C11—H11A108.0
C9—C4—C5124.4 (10)C12—C11—H11A108.0
C9—C4—N1119.4 (9)C10—C11—H11B108.0
C5—C4—N1114.6 (10)C12—C11—H11B108.0
C9—C4—H494.1H11A—C11—H11B107.2
C5—C4—H494.1C13—C12—C11116.4 (9)
N1—C4—H494.1C13—C12—H12A108.2
C4—C5—C6113.8 (10)C11—C12—H12A108.2
C4—C5—H5A108.8C13—C12—H12B108.2
C6—C5—H5A108.8C11—C12—H12B108.2
C4—C5—H5B108.8H12A—C12—H12B107.3
C6—C5—H5B108.8C14—C13—C12121.5 (9)
H5A—C5—H5B107.7C14—C13—H13A106.9
C7—C6—C5119.5 (11)C12—C13—H13A106.9
C7—C6—H6A107.4C14—C13—H13B106.9
C5—C6—H6A107.4C12—C13—H13B106.9
C7—C6—H6B107.4H13A—C13—H13B106.7
C5—C6—H6B107.4C13—C14—C15119.0 (9)
H6A—C6—H6B107.0C13—C14—H14A107.6
C6—C7—C8123.9 (13)C15—C14—H14A107.6
C6—C7—H7A106.4C13—C14—H14B107.6
C8—C7—H7A106.4C15—C14—H14B107.6
C6—C7—H7B106.4H14A—C14—H14B107.0
C8—C7—H7B106.4C14—C15—C10117.3 (8)
H7A—C7—H7B106.4C14—C15—H15A108.0
C7—C8—C9116.9 (12)C10—C15—H15A108.0
C7—C8—H8A108.1C14—C15—H15B108.0
C9—C8—H8A108.1C10—C15—H15B108.0
C7—C8—H8B108.1H15A—C15—H15B107.2
C9—C8—H8B108.1
C2—N1—C1—O1−177.2 (9)C1—N1—C4—C595.6 (13)
C4—N1—C1—O1−2.9 (15)C2—N1—C4—C5−90.7 (13)
C2—N1—C1—N25.0 (10)C9—C4—C5—C6−16 (2)
C4—N1—C1—N2179.4 (8)N1—C4—C5—C6178.3 (11)
C3—N2—C1—O1177.6 (9)C4—C5—C6—C716 (2)
C10—N2—C1—O15.2 (15)C5—C6—C7—C8−17 (3)
C3—N2—C1—N1−4.6 (10)C6—C7—C8—C914 (2)
C10—N2—C1—N1−177.0 (8)C5—C4—C9—C815 (2)
C1—N1—C2—O2177.1 (8)N1—C4—C9—C8179.9 (11)
C4—N1—C2—O22.6 (13)C7—C8—C9—C4−12.7 (19)
C1—N1—C2—C3−3.5 (9)C3—N2—C10—C1182.0 (15)
C4—N1—C2—C3−178.0 (8)C1—N2—C10—C11−106.7 (14)
C1—N2—C3—O3−179.9 (9)C3—N2—C10—C15−70.7 (15)
C10—N2—C3—O3−7.8 (15)C1—N2—C10—C15100.6 (13)
C1—N2—C3—C22.4 (9)N2—C10—C11—C12−176.7 (11)
C10—N2—C3—C2174.4 (9)C15—C10—C11—C12−25.6 (18)
O2—C2—C3—O32.2 (13)C10—C11—C12—C1323.8 (16)
N1—C2—C3—O3−177.3 (9)C11—C12—C13—C14−20.9 (19)
O2—C2—C3—N2−179.9 (8)C12—C13—C14—C1519 (2)
N1—C2—C3—N20.6 (8)C13—C14—C15—C10−19.0 (19)
C1—N1—C4—C9−70.9 (17)C11—C10—C15—C1423.2 (19)
C2—N1—C4—C9102.8 (14)N2—C10—C15—C14174.9 (11)
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