Literature DB >> 23284534

1,3-Dicyclo-hexyl-imidazolidine-2,4,5-trione: a second polymorph.

Oualid Talhi1, José A Fernandes, Diana C G A Pinto, Artur M S Silva, Filipe A Almeida Paz.   

Abstract

The title compound, C(15)H(22)N(2)O(3), was obtained as a by-product of oxidative cleavage of 1,3-dicyclo-hexyl-(3-oxo-2,3-dihydro-benzofuran-2-yl)imidazolidine-2,4-dione. Herein, we report the crystal structure of a second polymorph, which was obtained by crystallization from an ethanol solution at 253 K, instead of slow evaporation of the same solvent at room temperature. While the first polymorph [Talhi et al. (2011). Acta Cryst. E67, o3243] crystallized in the non-centrosymmetric space group P2(1)2(1)2(1), this second polymorph crystallizes in the centrosymmetric space group P2(1)/n. Compared to the first polymorph, in the crystal no C=O⋯C=O inter-actions were found (C⋯O inter-molecular distance longer than 3.15 Å) and instead, close packing of individual mol-ecular units is mediated by C-H⋯π and weak C-H⋯O inter-actions.

Entities:  

Year:  2012        PMID: 23284534      PMCID: PMC3515314          DOI: 10.1107/S1600536812043619

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structure of the ortho­rhom­bic polymorph and further background information to the study, see: Talhi et al. (2011 ▶). For general background on crystallographic studies by our research group of related compounds having biological activity, see: Fernandes et al. (2011 ▶); Loughzail et al. (2011 ▶). For determination of the melting point, see: Ulrichan & Sayigh (1965 ▶).

Experimental

Crystal data

C15H22N2O3 M = 278.35 Monoclinic, a = 5.1980 (2) Å b = 21.7123 (10) Å c = 13.0244 (6) Å β = 100.163 (2)° V = 1446.88 (11) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 150 K 0.13 × 0.06 × 0.06 mm

Data collection

Bruker X8 Kappa CCD APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1998 ▶) T min = 0.989, T max = 0.995 38115 measured reflections 3876 independent reflections 2999 reflections with I > 2σ(I) R int = 0.049

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.104 S = 1.04 3876 reflections 181 parameters H-atom parameters constrained Δρmax = 0.37 e Å−3 Δρmin = −0.18 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT-Plus (Bruker, 2005 ▶); data reduction: SAINT-Plus (Bruker, 2005 ▶); program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2009 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812043619/nk2188sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812043619/nk2188Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812043619/nk2188Isup3.cdx Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812043619/nk2188Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H22N2O3F(000) = 600
Mr = 278.35Dx = 1.278 Mg m3
Monoclinic, P21/nMelting point: 175 K
Hall symbol: -P 2ynMo Kα radiation, λ = 0.71073 Å
a = 5.1980 (2) ÅCell parameters from 3876 reflections
b = 21.7123 (10) Åθ = 3.7–29.1°
c = 13.0244 (6) ŵ = 0.09 mm1
β = 100.163 (2)°T = 150 K
V = 1446.88 (11) Å3Block, yellow
Z = 40.13 × 0.06 × 0.06 mm
Bruker X8 Kappa CCD APEXII diffractometer3876 independent reflections
Radiation source: fine-focus sealed tube2999 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.049
ω and φ scansθmax = 29.1°, θmin = 3.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 1998)h = −6→7
Tmin = 0.989, Tmax = 0.995k = −29→29
38115 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.104H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0374P)2 + 0.6588P] where P = (Fo2 + 2Fc2)/3
3876 reflections(Δ/σ)max = 0.001
181 parametersΔρmax = 0.37 e Å3
0 restraintsΔρmin = −0.18 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.9734 (2)0.59882 (5)0.12018 (9)0.0179 (2)
C20.7011 (2)0.59707 (6)0.23971 (10)0.0187 (2)
C30.6479 (2)0.65531 (6)0.17166 (10)0.0189 (2)
C40.8265 (2)0.69411 (5)0.01391 (9)0.0182 (2)
H40.96410.6788−0.02450.022*
C50.9020 (3)0.75914 (6)0.05202 (10)0.0225 (3)
H5A1.07630.75850.09730.027*
H5B0.77400.77480.09370.027*
C60.9077 (3)0.80176 (6)−0.04117 (11)0.0246 (3)
H6A0.94800.8442−0.01570.030*
H6B1.04820.7883−0.07850.030*
C70.6476 (3)0.80154 (6)−0.11652 (10)0.0224 (3)
H7A0.50980.8190−0.08150.027*
H7B0.66130.8278−0.17750.027*
C80.5724 (3)0.73639 (6)−0.15326 (10)0.0255 (3)
H8A0.70010.7208−0.19510.031*
H8B0.39820.7371−0.19860.031*
C90.5654 (3)0.69293 (6)−0.06145 (10)0.0235 (3)
H9A0.42360.7056−0.02420.028*
H9B0.52820.6505−0.08770.028*
C101.0256 (2)0.50852 (5)0.24346 (10)0.0185 (2)
H101.19260.50480.21580.022*
C111.0949 (3)0.50699 (6)0.36255 (10)0.0227 (3)
H11A0.93390.51070.39290.027*
H11B1.21050.54210.38760.027*
C121.2335 (3)0.44639 (6)0.39731 (11)0.0257 (3)
H12A1.40080.44430.37110.031*
H12B1.27330.44480.47440.031*
C131.0635 (3)0.39147 (6)0.35622 (13)0.0334 (3)
H13A0.90260.39160.38710.040*
H13B1.15930.35280.37730.040*
C140.9900 (3)0.39390 (6)0.23745 (13)0.0351 (4)
H14A0.87320.35890.21290.042*
H14B1.14990.38970.20650.042*
C150.8525 (3)0.45432 (6)0.20050 (11)0.0263 (3)
H15A0.81760.45580.12330.032*
H15B0.68320.45690.22510.032*
N10.9031 (2)0.56747 (5)0.20531 (8)0.0185 (2)
N20.8172 (2)0.65170 (5)0.10196 (8)0.0182 (2)
O11.13883 (18)0.58316 (4)0.07174 (7)0.0244 (2)
O20.58424 (18)0.58220 (4)0.30792 (7)0.0260 (2)
O30.49016 (18)0.69488 (4)0.18021 (8)0.0259 (2)
U11U22U33U12U13U23
C10.0198 (6)0.0174 (5)0.0157 (6)−0.0008 (4)0.0015 (5)0.0002 (4)
C20.0183 (6)0.0194 (5)0.0182 (6)−0.0008 (4)0.0023 (5)−0.0007 (4)
C30.0186 (6)0.0201 (6)0.0178 (6)−0.0009 (5)0.0025 (5)0.0005 (5)
C40.0201 (6)0.0183 (5)0.0160 (6)0.0007 (4)0.0031 (5)0.0049 (4)
C50.0232 (7)0.0206 (6)0.0215 (6)−0.0030 (5)−0.0022 (5)0.0030 (5)
C60.0228 (7)0.0216 (6)0.0283 (7)−0.0030 (5)0.0012 (5)0.0060 (5)
C70.0218 (6)0.0223 (6)0.0227 (6)0.0025 (5)0.0030 (5)0.0060 (5)
C80.0282 (7)0.0262 (6)0.0198 (6)−0.0003 (5)−0.0019 (5)0.0037 (5)
C90.0244 (7)0.0227 (6)0.0213 (6)−0.0048 (5)−0.0022 (5)0.0024 (5)
C100.0209 (6)0.0165 (5)0.0182 (6)0.0023 (4)0.0041 (5)0.0021 (4)
C110.0272 (7)0.0213 (6)0.0189 (6)0.0027 (5)0.0023 (5)0.0016 (5)
C120.0277 (7)0.0278 (6)0.0210 (6)0.0061 (5)0.0026 (5)0.0055 (5)
C130.0327 (8)0.0228 (7)0.0434 (9)0.0033 (6)0.0036 (7)0.0134 (6)
C140.0391 (8)0.0171 (6)0.0442 (9)0.0011 (6)−0.0062 (7)−0.0031 (6)
C150.0297 (7)0.0187 (6)0.0279 (7)0.0001 (5)−0.0025 (6)−0.0008 (5)
N10.0214 (5)0.0175 (5)0.0176 (5)0.0015 (4)0.0059 (4)0.0019 (4)
N20.0196 (5)0.0176 (5)0.0178 (5)0.0020 (4)0.0044 (4)0.0027 (4)
O10.0287 (5)0.0242 (4)0.0225 (5)0.0060 (4)0.0105 (4)0.0031 (4)
O20.0259 (5)0.0288 (5)0.0255 (5)0.0017 (4)0.0110 (4)0.0057 (4)
O30.0251 (5)0.0254 (5)0.0284 (5)0.0074 (4)0.0079 (4)0.0030 (4)
C1—O11.2017 (15)C8—H8A0.9900
C1—N21.4022 (15)C8—H8B0.9900
C1—N11.4033 (15)C9—H9A0.9900
C2—O21.2052 (15)C9—H9B0.9900
C2—N11.3723 (16)C10—N11.4760 (15)
C2—C31.5409 (17)C10—C151.5262 (17)
C3—O31.2062 (15)C10—C111.5296 (17)
C3—N21.3734 (16)C10—H101.0000
C4—N21.4781 (15)C11—C121.5297 (18)
C4—C51.5250 (17)C11—H11A0.9900
C4—C91.5284 (18)C11—H11B0.9900
C4—H41.0000C12—C131.524 (2)
C5—C61.5307 (18)C12—H12A0.9900
C5—H5A0.9900C12—H12B0.9900
C5—H5B0.9900C13—C141.527 (2)
C6—C71.5239 (18)C13—H13A0.9900
C6—H6A0.9900C13—H13B0.9900
C6—H6B0.9900C14—C151.5302 (19)
C7—C81.5220 (18)C14—H14A0.9900
C7—H7A0.9900C14—H14B0.9900
C7—H7B0.9900C15—H15A0.9900
C8—C91.5288 (18)C15—H15B0.9900
O1—C1—N2126.12 (11)H9A—C9—H9B108.1
O1—C1—N1126.00 (11)N1—C10—C15110.74 (10)
N2—C1—N1107.88 (10)N1—C10—C11111.77 (10)
O2—C2—N1129.00 (12)C15—C10—C11111.92 (10)
O2—C2—C3125.55 (11)N1—C10—H10107.4
N1—C2—C3105.45 (10)C15—C10—H10107.4
O3—C3—N2128.81 (12)C11—C10—H10107.4
O3—C3—C2125.96 (11)C10—C11—C12109.47 (10)
N2—C3—C2105.22 (10)C10—C11—H11A109.8
N2—C4—C5111.47 (10)C12—C11—H11A109.8
N2—C4—C9109.93 (10)C10—C11—H11B109.8
C5—C4—C9111.89 (10)C12—C11—H11B109.8
N2—C4—H4107.8H11A—C11—H11B108.2
C5—C4—H4107.8C13—C12—C11110.82 (11)
C9—C4—H4107.8C13—C12—H12A109.5
C4—C5—C6109.97 (10)C11—C12—H12A109.5
C4—C5—H5A109.7C13—C12—H12B109.5
C6—C5—H5A109.7C11—C12—H12B109.5
C4—C5—H5B109.7H12A—C12—H12B108.1
C6—C5—H5B109.7C12—C13—C14110.77 (12)
H5A—C5—H5B108.2C12—C13—H13A109.5
C7—C6—C5111.69 (11)C14—C13—H13A109.5
C7—C6—H6A109.3C12—C13—H13B109.5
C5—C6—H6A109.3C14—C13—H13B109.5
C7—C6—H6B109.3H13A—C13—H13B108.1
C5—C6—H6B109.3C13—C14—C15111.56 (12)
H6A—C6—H6B107.9C13—C14—H14A109.3
C8—C7—C6110.79 (11)C15—C14—H14A109.3
C8—C7—H7A109.5C13—C14—H14B109.3
C6—C7—H7A109.5C15—C14—H14B109.3
C8—C7—H7B109.5H14A—C14—H14B108.0
C6—C7—H7B109.5C10—C15—C14109.49 (11)
H7A—C7—H7B108.1C10—C15—H15A109.8
C7—C8—C9111.59 (11)C14—C15—H15A109.8
C7—C8—H8A109.3C10—C15—H15B109.8
C9—C8—H8A109.3C14—C15—H15B109.8
C7—C8—H8B109.3H15A—C15—H15B108.2
C9—C8—H8B109.3C2—N1—C1110.60 (10)
H8A—C8—H8B108.0C2—N1—C10127.27 (10)
C4—C9—C8110.55 (11)C1—N1—C10121.98 (10)
C4—C9—H9A109.5C3—N2—C1110.76 (10)
C8—C9—H9A109.5C3—N2—C4126.14 (10)
C4—C9—H9B109.5C1—N2—C4122.96 (10)
C8—C9—H9B109.5
O2—C2—C3—O33.1 (2)O2—C2—N1—C101.1 (2)
N1—C2—C3—O3−177.10 (12)C3—C2—N1—C10−178.71 (11)
O2—C2—C3—N2−177.10 (12)O1—C1—N1—C2−177.91 (12)
N1—C2—C3—N22.67 (13)N2—C1—N1—C22.28 (14)
N2—C4—C5—C6−179.59 (10)O1—C1—N1—C10−1.95 (19)
C9—C4—C5—C6−56.03 (14)N2—C1—N1—C10178.24 (10)
C4—C5—C6—C756.11 (15)C15—C10—N1—C276.87 (15)
C5—C6—C7—C8−56.18 (15)C11—C10—N1—C2−48.64 (16)
C6—C7—C8—C955.57 (15)C15—C10—N1—C1−98.38 (13)
N2—C4—C9—C8−179.76 (10)C11—C10—N1—C1136.10 (12)
C5—C4—C9—C855.82 (14)O3—C3—N2—C1178.39 (13)
C7—C8—C9—C4−55.24 (15)C2—C3—N2—C1−1.36 (13)
N1—C10—C11—C12−177.09 (10)O3—C3—N2—C4−5.9 (2)
C15—C10—C11—C1258.05 (14)C2—C3—N2—C4174.36 (11)
C10—C11—C12—C13−57.32 (15)O1—C1—N2—C3179.78 (12)
C11—C12—C13—C1457.00 (16)N1—C1—N2—C3−0.41 (14)
C12—C13—C14—C15−56.42 (17)O1—C1—N2—C43.89 (19)
N1—C10—C15—C14177.51 (12)N1—C1—N2—C4−176.29 (10)
C11—C10—C15—C14−57.06 (15)C5—C4—N2—C364.30 (16)
C13—C14—C15—C1055.77 (17)C9—C4—N2—C3−60.36 (15)
O2—C2—N1—C1176.75 (13)C5—C4—N2—C1−120.46 (12)
C3—C2—N1—C1−3.01 (13)C9—C4—N2—C1114.87 (13)
D—H···AD—HH···AD···AD—H···A
C7—H7B···Cgi0.992.783.5511 (14)135
C11—H11B···O2ii0.992.513.2065 (18)127
Table 1

Short intermolecular interactions (Å, °)

Cg is the centroid of the N1/N2/C1–C3 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
C7—H7BCg i 0.992.783.5511 (14)135
C11—H11B⋯O2ii 0.992.513.2065 (18)127

Symmetry codes: (i) ; (ii) .

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