Literature DB >> 22199749

N,N'-Bis(2-aza-niumylbenz-yl)ethane-1,2-diaminium tetra-chloride.

Luis Ángel Garza Rodríguez, Sylvain Bernès, Perla Elizondo Martínez, Blanca Nájera Martínez, Nancy Pérez Rodríguez.   

Abstract

The title compound, C(16)H(26)N(4) (4+)·4Cl(-), is based on a fully protonated tetra-amine. In the cation, both benzene rings are connected by an all-trans chain, and the rings are almost parallel, with an angle between the mean planes of 8.34 (12)°. The benzene rings are arranged in such a way that the NH(3) (+) substituents are oriented cis with respect to the central chain. This arrangement is a consequence of multiple N-H⋯Cl hydrogen bonds, involving all N-H groups in the cation and the four independent Cl(-) anions. These contacts have strengths ranging from weak to strong (based on H⋯Cl separations), and generate a complex three-dimensional crystal structure with no preferential crystallographic orientation for the contacts.

Entities:  

Year:  2011        PMID: 22199749      PMCID: PMC3238896          DOI: 10.1107/S1600536811045880

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structure of the free tetra­amine, see: Rodríguez de Barbarín et al. (2007 ▶). For related structures, see: Gakias et al. (2005 ▶); Garza Rodríguez et al. (2009 ▶, 2011 ▶). For the synthesis of the title hydro­chloride, see: Ansell et al. (1983 ▶); Gruenwedel (1968 ▶).

Experimental

Crystal data

C16H26N4 4+·4Cl− M = 416.21 Triclinic, a = 8.6827 (13) Å b = 11.4831 (17) Å c = 11.7317 (17) Å α = 117.773 (10)° β = 101.826 (14)° γ = 94.387 (16)° V = 992.8 (3) Å3 Z = 2 Mo Kα radiation μ = 0.60 mm−1 T = 298 K 0.40 × 0.22 × 0.18 mm

Data collection

Siemens P4 diffractometer Absorption correction: ψ scan (XSCANS; Siemens, 1996 ▶) T min = 0.552, T max = 0.607 6618 measured reflections 4022 independent reflections 3185 reflections with I > 2σ(I) R int = 0.029 2 standard reflections every 98 reflections intensity decay: 1.5%

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.090 S = 1.06 4022 reflections 219 parameters H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.26 e Å−3 Data collection: XSCANS (Siemens, 1996 ▶); cell refinement: XSCANS; data reduction: XSCANS; program(s) used to solve structure: SHELXTL-Plus (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL-Plus; molecular graphics: SHELXTL-Plus and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXTL-Plus. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811045880/fj2472sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811045880/fj2472Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811045880/fj2472Isup3.mol Supplementary material file. DOI: 10.1107/S1600536811045880/fj2472Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H26N44+·4ClZ = 2
Mr = 416.21F(000) = 436
Triclinic, P1Dx = 1.392 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.6827 (13) ÅCell parameters from 100 reflections
b = 11.4831 (17) Åθ = 4.8–12.4°
c = 11.7317 (17) ŵ = 0.60 mm1
α = 117.773 (10)°T = 298 K
β = 101.826 (14)°Irregular, yellow
γ = 94.387 (16)°0.40 × 0.22 × 0.18 mm
V = 992.8 (3) Å3
Siemens P4 diffractometer3185 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.029
graphiteθmax = 26.4°, θmin = 2.0°
ω scansh = −10→5
Absorption correction: ψ scan (XSCANS; Siemens, 1996)k = −13→13
Tmin = 0.552, Tmax = 0.607l = −14→14
6618 measured reflections2 standard reflections every 98 reflections
4022 independent reflections intensity decay: 1.5%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.090H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0329P)2 + 0.4207P] where P = (Fo2 + 2Fc2)/3
4022 reflections(Δ/σ)max = 0.001
219 parametersΔρmax = 0.31 e Å3
0 restraintsΔρmin = −0.26 e Å3
0 constraints
xyzUiso*/Ueq
Cl10.64430 (7)0.88174 (6)0.41424 (6)0.04766 (16)
Cl21.08774 (6)0.74843 (6)0.69409 (5)0.03914 (14)
Cl30.45844 (6)0.37199 (6)0.07026 (6)0.04107 (14)
Cl40.25755 (6)0.58183 (5)0.34958 (5)0.03896 (14)
N10.36517 (19)0.85610 (16)0.61340 (16)0.0315 (4)
H1A0.37930.78550.54260.047*
H1B0.35390.92270.59540.047*
H1C0.27740.83330.63240.047*
C20.5048 (2)0.90023 (19)0.72836 (18)0.0273 (4)
C30.5098 (2)1.0198 (2)0.8409 (2)0.0331 (4)
H3A0.42821.06760.84040.040*
C40.6361 (3)1.0679 (2)0.95391 (19)0.0357 (5)
H4A0.63961.14801.03010.043*
C50.7571 (3)0.9971 (2)0.9539 (2)0.0389 (5)
H5A0.84401.03031.02930.047*
C60.7488 (2)0.8769 (2)0.8416 (2)0.0346 (4)
H6A0.83010.82900.84300.042*
C70.6222 (2)0.82504 (19)0.72644 (18)0.0267 (4)
C80.6184 (2)0.68997 (19)0.61126 (19)0.0288 (4)
H8A0.51070.65380.55110.035*
H8B0.64490.62910.64480.035*
N90.73471 (18)0.69858 (16)0.53534 (15)0.0264 (3)
H9A0.71300.75840.50810.032*
H9B0.83490.72870.59050.032*
C100.7277 (2)0.5675 (2)0.41706 (19)0.0324 (4)
H10A0.61760.52860.36250.039*
H10B0.76670.50600.44610.039*
C110.8301 (2)0.5883 (2)0.33596 (19)0.0328 (4)
H11A0.79650.65550.31350.039*
H11B0.94150.62090.38860.039*
N120.81500 (19)0.46002 (16)0.21081 (15)0.0279 (3)
H12A0.71160.41720.17530.034*
H12B0.87280.40680.23050.034*
C130.8726 (2)0.48425 (19)0.11018 (18)0.0284 (4)
H13A0.97600.54520.15410.034*
H13B0.79790.52730.07700.034*
C140.8885 (2)0.35751 (19)−0.00620 (18)0.0267 (4)
C151.0288 (2)0.3081 (2)0.0064 (2)0.0326 (4)
H15A1.10680.35100.08830.039*
C161.0547 (3)0.1976 (2)−0.0991 (2)0.0392 (5)
H16A1.15030.1675−0.08860.047*
C170.9393 (3)0.1313 (2)−0.2207 (2)0.0409 (5)
H17A0.95660.0561−0.29190.049*
C180.7979 (3)0.1767 (2)−0.2363 (2)0.0351 (5)
H18A0.71950.1322−0.31790.042*
C190.7740 (2)0.28834 (19)−0.13001 (18)0.0273 (4)
N200.62423 (19)0.33434 (17)−0.15287 (16)0.0337 (4)
H20A0.55550.2703−0.22850.051*
H20B0.64410.4080−0.15920.051*
H20C0.58190.3528−0.08480.051*
U11U22U33U12U13U23
Cl10.0568 (3)0.0335 (3)0.0427 (3)0.0081 (2)−0.0071 (2)0.0193 (2)
Cl20.0314 (3)0.0470 (3)0.0387 (3)0.0066 (2)0.0051 (2)0.0229 (2)
Cl30.0302 (3)0.0403 (3)0.0467 (3)0.0091 (2)0.0124 (2)0.0157 (2)
Cl40.0450 (3)0.0356 (3)0.0309 (3)0.0085 (2)0.0039 (2)0.0146 (2)
N10.0307 (8)0.0285 (9)0.0344 (9)0.0088 (7)0.0062 (7)0.0155 (7)
C20.0294 (9)0.0283 (10)0.0267 (9)0.0065 (8)0.0096 (7)0.0146 (8)
C30.0380 (11)0.0281 (10)0.0352 (11)0.0099 (8)0.0145 (9)0.0149 (9)
C40.0490 (12)0.0269 (10)0.0258 (10)0.0045 (9)0.0149 (9)0.0074 (8)
C50.0411 (12)0.0405 (12)0.0281 (10)0.0028 (9)0.0028 (9)0.0148 (9)
C60.0354 (11)0.0372 (11)0.0302 (10)0.0109 (9)0.0074 (8)0.0158 (9)
C70.0296 (10)0.0264 (10)0.0257 (9)0.0065 (8)0.0097 (7)0.0131 (8)
C80.0306 (10)0.0284 (10)0.0292 (10)0.0099 (8)0.0104 (8)0.0141 (8)
N90.0275 (8)0.0271 (8)0.0228 (7)0.0075 (6)0.0053 (6)0.0112 (7)
C100.0369 (11)0.0286 (10)0.0265 (9)0.0091 (8)0.0104 (8)0.0085 (8)
C110.0356 (10)0.0274 (10)0.0286 (10)0.0052 (8)0.0105 (8)0.0078 (8)
N120.0306 (8)0.0273 (8)0.0256 (8)0.0083 (7)0.0081 (6)0.0123 (7)
C130.0292 (10)0.0307 (10)0.0236 (9)0.0038 (8)0.0070 (7)0.0126 (8)
C140.0259 (9)0.0289 (10)0.0257 (9)0.0046 (7)0.0071 (7)0.0139 (8)
C150.0276 (10)0.0385 (11)0.0310 (10)0.0070 (8)0.0044 (8)0.0180 (9)
C160.0325 (11)0.0432 (12)0.0438 (12)0.0153 (9)0.0114 (9)0.0216 (10)
C170.0486 (13)0.0348 (12)0.0370 (11)0.0171 (10)0.0182 (10)0.0121 (10)
C180.0365 (11)0.0370 (11)0.0257 (10)0.0058 (9)0.0051 (8)0.0122 (9)
C190.0270 (9)0.0318 (10)0.0263 (9)0.0081 (8)0.0084 (7)0.0162 (8)
N200.0297 (9)0.0356 (9)0.0307 (9)0.0081 (7)0.0022 (7)0.0146 (8)
N1—C21.464 (2)C11—N121.490 (2)
N1—H1A0.8900C11—H11A0.9700
N1—H1B0.8900C11—H11B0.9700
N1—H1C0.8900N12—C131.499 (2)
C2—C31.382 (3)N12—H12A0.9000
C2—C71.383 (3)N12—H12B0.9000
C3—C41.376 (3)C13—C141.502 (3)
C3—H3A0.9300C13—H13A0.9700
C4—C51.377 (3)C13—H13B0.9700
C4—H4A0.9300C14—C151.392 (3)
C5—C61.378 (3)C14—C191.393 (3)
C5—H5A0.9300C15—C161.374 (3)
C6—C71.389 (3)C15—H15A0.9300
C6—H6A0.9300C16—C171.380 (3)
C7—C81.501 (3)C16—H16A0.9300
C8—N91.503 (2)C17—C181.381 (3)
C8—H8A0.9700C17—H17A0.9300
C8—H8B0.9700C18—C191.378 (3)
N9—C101.484 (2)C18—H18A0.9300
N9—H9A0.9000C19—N201.462 (2)
N9—H9B0.9000N20—H20A0.8900
C10—C111.510 (3)N20—H20B0.8900
C10—H10A0.9700N20—H20C0.8900
C10—H10B0.9700
C2—N1—H1A109.5N12—C11—C10110.36 (16)
C2—N1—H1B109.5N12—C11—H11A109.6
H1A—N1—H1B109.5C10—C11—H11A109.6
C2—N1—H1C109.5N12—C11—H11B109.6
H1A—N1—H1C109.5C10—C11—H11B109.6
H1B—N1—H1C109.5H11A—C11—H11B108.1
C3—C2—C7121.74 (18)C11—N12—C13111.41 (15)
C3—C2—N1115.98 (17)C11—N12—H12A109.3
C7—C2—N1122.25 (17)C13—N12—H12A109.3
C4—C3—C2119.74 (19)C11—N12—H12B109.3
C4—C3—H3A120.1C13—N12—H12B109.3
C2—C3—H3A120.1H12A—N12—H12B108.0
C3—C4—C5119.89 (19)N12—C13—C14112.95 (15)
C3—C4—H4A120.1N12—C13—H13A109.0
C5—C4—H4A120.1C14—C13—H13A109.0
C4—C5—C6119.60 (19)N12—C13—H13B109.0
C4—C5—H5A120.2C14—C13—H13B109.0
C6—C5—H5A120.2H13A—C13—H13B107.8
C5—C6—C7121.89 (19)C15—C14—C19117.02 (17)
C5—C6—H6A119.1C15—C14—C13118.84 (17)
C7—C6—H6A119.1C19—C14—C13124.07 (17)
C2—C7—C6117.10 (17)C16—C15—C14121.56 (18)
C2—C7—C8124.54 (17)C16—C15—H15A119.2
C6—C7—C8118.31 (17)C14—C15—H15A119.2
C7—C8—N9111.55 (16)C15—C16—C17120.13 (19)
C7—C8—H8A109.3C15—C16—H16A119.9
N9—C8—H8A109.3C17—C16—H16A119.9
C7—C8—H8B109.3C16—C17—C18119.84 (19)
N9—C8—H8B109.3C16—C17—H17A120.1
H8A—C8—H8B108.0C18—C17—H17A120.1
C10—N9—C8112.63 (15)C19—C18—C17119.46 (19)
C10—N9—H9A109.1C19—C18—H18A120.3
C8—N9—H9A109.1C17—C18—H18A120.3
C10—N9—H9B109.1C18—C19—C14121.98 (18)
C8—N9—H9B109.1C18—C19—N20117.28 (17)
H9A—N9—H9B107.8C14—C19—N20120.72 (16)
N9—C10—C11109.22 (16)C19—N20—H20A109.5
N9—C10—H10A109.8C19—N20—H20B109.5
C11—C10—H10A109.8H20A—N20—H20B109.5
N9—C10—H10B109.8C19—N20—H20C109.5
C11—C10—H10B109.8H20A—N20—H20C109.5
H10A—C10—H10B108.3H20B—N20—H20C109.5
C7—C2—C3—C41.4 (3)C10—C11—N12—C13162.72 (16)
N1—C2—C3—C4179.35 (17)C11—N12—C13—C14169.22 (16)
C2—C3—C4—C50.4 (3)N12—C13—C14—C15−84.1 (2)
C3—C4—C5—C6−1.6 (3)N12—C13—C14—C1999.1 (2)
C4—C5—C6—C71.0 (3)C19—C14—C15—C161.2 (3)
C3—C2—C7—C6−1.9 (3)C13—C14—C15—C16−175.81 (19)
N1—C2—C7—C6−179.74 (17)C14—C15—C16—C17−1.1 (3)
C3—C2—C7—C8175.54 (18)C15—C16—C17—C180.4 (3)
N1—C2—C7—C8−2.3 (3)C16—C17—C18—C190.2 (3)
C5—C6—C7—C20.7 (3)C17—C18—C19—C14−0.1 (3)
C5—C6—C7—C8−176.90 (19)C17—C18—C19—N20178.41 (19)
C2—C7—C8—N9105.5 (2)C15—C14—C19—C18−0.6 (3)
C6—C7—C8—N9−77.2 (2)C13—C14—C19—C18176.23 (18)
C7—C8—N9—C10−177.27 (15)C15—C14—C19—N20−179.02 (17)
C8—N9—C10—C11172.08 (16)C13—C14—C19—N20−2.2 (3)
N9—C10—C11—N12−175.50 (15)
D—H···AD—HH···AD···AD—H···A
N1—H1A···Cl40.892.333.1067 (18)146.
N1—H1B···Cl1i0.892.303.1798 (18)170.
N1—H1C···Cl2ii0.892.263.1301 (18)167.
N9—H9A···Cl10.902.213.1046 (17)172.
N9—H9B···Cl20.902.223.0968 (17)165.
N12—H12A···Cl30.902.183.0333 (18)159.
N12—H12B···Cl2iii0.902.353.1779 (17)153.
N20—H20A···Cl1iv0.892.293.1764 (19)173.
N20—H20B···Cl3iv0.892.563.2305 (18)133.
N20—H20C···Cl30.892.233.1139 (18)173.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯Cl40.892.333.1067 (18)146
N1—H1B⋯Cl1i0.892.303.1798 (18)170
N1—H1C⋯Cl2ii0.892.263.1301 (18)167
N9—H9A⋯Cl10.902.213.1046 (17)172
N9—H9B⋯Cl20.902.223.0968 (17)165
N12—H12A⋯Cl30.902.183.0333 (18)159
N12—H12B⋯Cl2iii0.902.353.1779 (17)153
N20—H20A⋯Cl1iv0.892.293.1764 (19)173
N20—H20B⋯Cl3iv0.892.563.2305 (18)133
N20—H20C⋯Cl30.892.233.1139 (18)173

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  N,N'-Bis(2-ammonio-benz-yl)ethane-1,2-diammonium-nitrate-perchlorate (1/1.5/2.5).

Authors:  Luis Angel Garza Rodríguez; Sylvain Bernès; Blanca Nájera Martínez; Perla Elizondo Martínez; Nancy Pérez Rodríguez
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-04

3.  N,N'-Bis(2-amino-benz-yl)ethane-1,2-diaminium bis-(4-methyl-benzene-sulfonate).

Authors:  Luis Ángel Garza Rodríguez; Sylvain Bernès; Perla Elizondo Martínez; Blanca Nájera Martínez; Sara L Rodríguez de Luna
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-09
  3 in total
  1 in total

1.  N,N'-Bis(2-amino-benz-yl)ethane-1,2-diaminium bis-(4-methyl-benzene-sulfonate).

Authors:  Luis Ángel Garza Rodríguez; Sylvain Bernès; Perla Elizondo Martínez; Blanca Nájera Martínez; Sara L Rodríguez de Luna
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-09
  1 in total

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