| Literature DB >> 22199715 |
K Jayakumar, M Sithambaresan, M R Prathapachandra Kurup.
Abstract
The title compound, C(15)H(16)N(4)S, exists in the Z conformation with the thionyl S atom lying cis to the azomethine N atom. The shortening of the N-N distance [1.3697 (17) Å] is due to extensive delocalization with the pyridine ring. The hydrazine-carbothio-amide unit is almost planar, with a maximum deviation of 0.013 (2) Å for the amide N atom. The stability of this conformation is favoured by the formation of an intra-molecular N-H⋯N hydrogen bond. The packing of the mol-ecules involves no classical inter-molecular hydrogen-bonding inter-actions; however, a C-H⋯π inter-action occurs.Entities:
Year: 2011 PMID: 22199715 PMCID: PMC3238862 DOI: 10.1107/S1600536811045739
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C15H16N4S | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 8120 reflections |
| θ = 2.0–26.0° | |
| µ = 0.22 mm−1 | |
| β = 94.528 (3)° | Block, yellow |
| 0.32 × 0.28 × 0.22 mm | |
| Bruker P4 diffractometer | 2828 independent reflections |
| Radiation source: fine-focus sealed tube | 2405 reflections with |
| graphite | |
| Detector resolution: 8.33 pixels mm-1 | θmax = 26.0°, θmin = 2.0° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 14231 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.014 | |
| 2828 reflections | Δρmax = 0.19 e Å−3 |
| 188 parameters | Δρmin = −0.20 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0104 (16) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.75460 (4) | 0.15132 (5) | 0.31975 (3) | 0.05808 (18) | |
| N1 | 0.98755 (14) | 0.68420 (14) | 0.33757 (8) | 0.0466 (3) | |
| N2 | 0.99018 (12) | 0.35758 (13) | 0.36663 (7) | 0.0413 (3) | |
| N3 | 0.87523 (12) | 0.42001 (16) | 0.33015 (8) | 0.0459 (3) | |
| N4 | 0.68025 (13) | 0.41370 (17) | 0.25113 (9) | 0.0552 (4) | |
| C1 | 1.33165 (15) | 0.42244 (19) | 0.39734 (10) | 0.0496 (4) | |
| H1 | 1.3333 | 0.4983 | 0.3580 | 0.059* | |
| C2 | 1.44999 (16) | 0.3531 (2) | 0.42682 (12) | 0.0584 (5) | |
| H2 | 1.5307 | 0.3820 | 0.4069 | 0.070* | |
| C3 | 1.44848 (18) | 0.2420 (2) | 0.48527 (12) | 0.0604 (5) | |
| H3 | 1.5280 | 0.1956 | 0.5048 | 0.072* | |
| C4 | 1.32983 (18) | 0.1993 (2) | 0.51494 (11) | 0.0586 (5) | |
| H4 | 1.3291 | 0.1248 | 0.5551 | 0.070* | |
| C5 | 1.21090 (16) | 0.26692 (18) | 0.48536 (10) | 0.0474 (4) | |
| H5 | 1.1305 | 0.2368 | 0.5053 | 0.057* | |
| C6 | 1.21111 (14) | 0.37895 (16) | 0.42634 (9) | 0.0386 (3) | |
| C7 | 1.08395 (14) | 0.45037 (16) | 0.39224 (8) | 0.0383 (3) | |
| C8 | 1.07742 (14) | 0.61797 (16) | 0.39196 (9) | 0.0404 (3) | |
| C9 | 1.15590 (16) | 0.70179 (18) | 0.44910 (10) | 0.0499 (4) | |
| H9 | 1.2173 | 0.6546 | 0.4865 | 0.060* | |
| C10 | 1.14187 (19) | 0.85641 (19) | 0.44978 (13) | 0.0600 (5) | |
| H10 | 1.1928 | 0.9143 | 0.4882 | 0.072* | |
| C11 | 1.05114 (18) | 0.92430 (19) | 0.39262 (12) | 0.0574 (4) | |
| H11 | 1.0408 | 1.0283 | 0.3912 | 0.069* | |
| C12 | 0.97729 (18) | 0.83393 (18) | 0.33834 (11) | 0.0527 (4) | |
| H12 | 0.9165 | 0.8793 | 0.2998 | 0.063* | |
| C13 | 0.77074 (15) | 0.33429 (18) | 0.29902 (9) | 0.0442 (4) | |
| C14 | 0.56134 (19) | 0.3425 (3) | 0.21167 (14) | 0.0755 (6) | |
| H14A | 0.5778 | 0.3140 | 0.1564 | 0.113* | |
| H14B | 0.4877 | 0.4119 | 0.2101 | 0.113* | |
| H14C | 0.5400 | 0.2547 | 0.2424 | 0.113* | |
| C15 | 0.6980 (2) | 0.5728 (2) | 0.23277 (14) | 0.0770 (6) | |
| H15A | 0.6945 | 0.6306 | 0.2824 | 0.115* | |
| H15B | 0.6279 | 0.6051 | 0.1930 | 0.115* | |
| H15C | 0.7833 | 0.5874 | 0.2108 | 0.115* | |
| H3' | 0.8833 (15) | 0.511 (2) | 0.3188 (9) | 0.043 (4)* |
| S1 | 0.0506 (3) | 0.0477 (3) | 0.0740 (3) | −0.00580 (18) | −0.0075 (2) | −0.00052 (19) |
| N1 | 0.0516 (8) | 0.0409 (7) | 0.0469 (7) | 0.0035 (6) | 0.0016 (6) | 0.0030 (5) |
| N2 | 0.0353 (6) | 0.0410 (7) | 0.0462 (7) | 0.0030 (5) | −0.0045 (5) | 0.0000 (5) |
| N3 | 0.0394 (7) | 0.0388 (7) | 0.0574 (8) | 0.0035 (5) | −0.0087 (6) | 0.0003 (6) |
| N4 | 0.0427 (7) | 0.0588 (9) | 0.0613 (8) | 0.0069 (6) | −0.0143 (6) | −0.0006 (7) |
| C1 | 0.0441 (9) | 0.0505 (9) | 0.0542 (9) | 0.0001 (7) | 0.0042 (7) | 0.0044 (7) |
| C2 | 0.0347 (8) | 0.0697 (12) | 0.0705 (11) | 0.0005 (8) | 0.0022 (8) | −0.0032 (9) |
| C3 | 0.0425 (9) | 0.0639 (11) | 0.0711 (11) | 0.0098 (8) | −0.0182 (8) | −0.0052 (9) |
| C4 | 0.0562 (10) | 0.0552 (10) | 0.0611 (10) | 0.0010 (8) | −0.0157 (8) | 0.0113 (8) |
| C5 | 0.0418 (8) | 0.0478 (9) | 0.0513 (9) | −0.0055 (7) | −0.0045 (7) | 0.0039 (7) |
| C6 | 0.0363 (7) | 0.0361 (7) | 0.0421 (8) | 0.0002 (6) | −0.0042 (6) | −0.0050 (6) |
| C7 | 0.0372 (7) | 0.0394 (7) | 0.0380 (7) | 0.0016 (6) | 0.0014 (6) | −0.0007 (6) |
| C8 | 0.0373 (7) | 0.0400 (8) | 0.0442 (8) | 0.0019 (6) | 0.0058 (6) | 0.0004 (6) |
| C9 | 0.0448 (9) | 0.0463 (9) | 0.0577 (9) | −0.0007 (7) | −0.0016 (7) | −0.0048 (7) |
| C10 | 0.0582 (11) | 0.0457 (10) | 0.0756 (12) | −0.0065 (8) | 0.0024 (9) | −0.0123 (8) |
| C11 | 0.0634 (11) | 0.0360 (8) | 0.0745 (11) | −0.0007 (8) | 0.0162 (9) | −0.0006 (8) |
| C12 | 0.0595 (10) | 0.0438 (9) | 0.0553 (9) | 0.0074 (7) | 0.0069 (8) | 0.0092 (7) |
| C13 | 0.0373 (8) | 0.0499 (9) | 0.0444 (8) | 0.0043 (6) | −0.0021 (6) | −0.0052 (6) |
| C14 | 0.0502 (11) | 0.0935 (16) | 0.0781 (13) | 0.0042 (10) | −0.0250 (10) | −0.0092 (11) |
| C15 | 0.0699 (13) | 0.0660 (13) | 0.0902 (15) | 0.0183 (10) | −0.0245 (11) | 0.0121 (11) |
| S1—C13 | 1.6712 (17) | C5—C6 | 1.383 (2) |
| N1—C12 | 1.335 (2) | C5—H5 | 0.9300 |
| N1—C8 | 1.3461 (19) | C6—C7 | 1.4898 (19) |
| N2—C7 | 1.2934 (18) | C7—C8 | 1.491 (2) |
| N2—N3 | 1.3697 (17) | C8—C9 | 1.386 (2) |
| N3—C13 | 1.3591 (19) | C9—C10 | 1.381 (2) |
| N3—H3' | 0.837 (17) | C9—H9 | 0.9300 |
| N4—C13 | 1.3466 (19) | C10—C11 | 1.385 (3) |
| N4—C14 | 1.452 (2) | C10—H10 | 0.9300 |
| N4—C15 | 1.459 (3) | C11—C12 | 1.366 (2) |
| C1—C6 | 1.385 (2) | C11—H11 | 0.9300 |
| C1—C2 | 1.387 (2) | C12—H12 | 0.9300 |
| C1—H1 | 0.9300 | C14—H14A | 0.9600 |
| C2—C3 | 1.371 (3) | C14—H14B | 0.9600 |
| C2—H2 | 0.9300 | C14—H14C | 0.9600 |
| C3—C4 | 1.370 (3) | C15—H15A | 0.9600 |
| C3—H3 | 0.9300 | C15—H15B | 0.9600 |
| C4—C5 | 1.385 (2) | C15—H15C | 0.9600 |
| C4—H4 | 0.9300 | ||
| C12—N1—C8 | 118.54 (14) | N1—C8—C7 | 117.75 (13) |
| C7—N2—N3 | 116.40 (12) | C9—C8—C7 | 120.85 (13) |
| C13—N3—N2 | 121.99 (13) | C10—C9—C8 | 119.18 (16) |
| C13—N3—H3' | 123.1 (11) | C10—C9—H9 | 120.4 |
| N2—N3—H3' | 113.3 (11) | C8—C9—H9 | 120.4 |
| C13—N4—C14 | 121.18 (15) | C9—C10—C11 | 119.31 (16) |
| C13—N4—C15 | 122.61 (14) | C9—C10—H10 | 120.3 |
| C14—N4—C15 | 116.16 (14) | C11—C10—H10 | 120.3 |
| C6—C1—C2 | 120.13 (16) | C12—C11—C10 | 118.02 (15) |
| C6—C1—H1 | 119.9 | C12—C11—H11 | 121.0 |
| C2—C1—H1 | 119.9 | C10—C11—H11 | 121.0 |
| C3—C2—C1 | 120.23 (16) | N1—C12—C11 | 123.63 (16) |
| C3—C2—H2 | 119.9 | N1—C12—H12 | 118.2 |
| C1—C2—H2 | 119.9 | C11—C12—H12 | 118.2 |
| C4—C3—C2 | 120.04 (16) | N4—C13—N3 | 112.61 (14) |
| C4—C3—H3 | 120.0 | N4—C13—S1 | 123.72 (12) |
| C2—C3—H3 | 120.0 | N3—C13—S1 | 123.65 (11) |
| C3—C4—C5 | 120.19 (16) | N4—C14—H14A | 109.5 |
| C3—C4—H4 | 119.9 | N4—C14—H14B | 109.5 |
| C5—C4—H4 | 119.9 | H14A—C14—H14B | 109.5 |
| C6—C5—C4 | 120.31 (15) | N4—C14—H14C | 109.5 |
| C6—C5—H5 | 119.8 | H14A—C14—H14C | 109.5 |
| C4—C5—H5 | 119.8 | H14B—C14—H14C | 109.5 |
| C5—C6—C1 | 119.09 (14) | N4—C15—H15A | 109.5 |
| C5—C6—C7 | 121.12 (13) | N4—C15—H15B | 109.5 |
| C1—C6—C7 | 119.77 (13) | H15A—C15—H15B | 109.5 |
| N2—C7—C6 | 115.17 (12) | N4—C15—H15C | 109.5 |
| N2—C7—C8 | 127.26 (13) | H15A—C15—H15C | 109.5 |
| C6—C7—C8 | 117.56 (12) | H15B—C15—H15C | 109.5 |
| N1—C8—C9 | 121.30 (14) | ||
| C7—N2—N3—C13 | 178.44 (14) | N2—C7—C8—N1 | −23.7 (2) |
| C6—C1—C2—C3 | −0.5 (3) | C6—C7—C8—N1 | 157.05 (13) |
| C1—C2—C3—C4 | −0.2 (3) | N2—C7—C8—C9 | 152.63 (15) |
| C2—C3—C4—C5 | 0.8 (3) | C6—C7—C8—C9 | −26.6 (2) |
| C3—C4—C5—C6 | −0.7 (3) | N1—C8—C9—C10 | −0.4 (2) |
| C4—C5—C6—C1 | 0.0 (2) | C7—C8—C9—C10 | −176.54 (16) |
| C4—C5—C6—C7 | 178.48 (14) | C8—C9—C10—C11 | −0.9 (3) |
| C2—C1—C6—C5 | 0.6 (2) | C9—C10—C11—C12 | 1.0 (3) |
| C2—C1—C6—C7 | −177.91 (14) | C8—N1—C12—C11 | −1.5 (3) |
| N3—N2—C7—C6 | −175.96 (12) | C10—C11—C12—N1 | 0.2 (3) |
| N3—N2—C7—C8 | 4.8 (2) | C14—N4—C13—N3 | 179.72 (16) |
| C5—C6—C7—N2 | −50.15 (19) | C15—N4—C13—N3 | 2.5 (2) |
| C1—C6—C7—N2 | 128.32 (15) | C14—N4—C13—S1 | −1.7 (2) |
| C5—C6—C7—C8 | 129.21 (15) | C15—N4—C13—S1 | −178.84 (15) |
| C1—C6—C7—C8 | −52.32 (19) | N2—N3—C13—N4 | −166.98 (14) |
| C12—N1—C8—C9 | 1.5 (2) | N2—N3—C13—S1 | 14.4 (2) |
| C12—N1—C8—C7 | 177.81 (14) |
| Cg is the centroid of the N1/C8–C12 ring. |
| H··· | ||||
| N3—H3'···N1 | 0.837 (17) | 1.869 (17) | 2.602 (2) | 145.4 (15) |
| C14—H14C···S1 | 0.96 | 2.57 | 3.030 (2) | 109. |
| C5—H5···Cgi | 0.93 | 2.66 | 3.536 (2) | 157 |
Hydrogen-bond geometry (Å, °)
Cg is the centroid of the N1/C8–C12 ring.
| H⋯ | ||||
|---|---|---|---|---|
| N3—H3′⋯N1 | 0.837 (17) | 1.869 (17) | 2.602 (2) | 145.4 (15) |
| C5—H5⋯ | 0.93 | 2.66 | 3.536 (2) | 157 |
Symmetry code: (i) .