Literature DB >> 22199715

(Z)-N,N-Dimethyl-2-[phen-yl(pyridin-2-yl)methyl-idene]hydrazinecarbothio-amide.

K Jayakumar, M Sithambaresan, M R Prathapachandra Kurup.   

Abstract

The title compound, C(15)H(16)N(4)S, exists in the Z conformation with the thionyl S atom lying cis to the azomethine N atom. The shortening of the N-N distance [1.3697 (17) Å] is due to extensive delocalization with the pyridine ring. The hydrazine-carbothio-amide unit is almost planar, with a maximum deviation of 0.013 (2) Å for the amide N atom. The stability of this conformation is favoured by the formation of an intra-molecular N-H⋯N hydrogen bond. The packing of the mol-ecules involves no classical inter-molecular hydrogen-bonding inter-actions; however, a C-H⋯π inter-action occurs.

Entities:  

Year:  2011        PMID: 22199715      PMCID: PMC3238862          DOI: 10.1107/S1600536811045739

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For abackground to hydrazinecarbothio­amide and its derivatives, see: Beraldo & Gambino (2004 ▶). For the synthesis, see: Joseph et al. (2006 ▶). For related structures of hydrazinecarbothio­amides, see: Philip et al. (2006 ▶); Arumugam et al. (2011 ▶). For related structures, see: Seena et al. (2008 ▶); Usman et al. (2002 ▶); Huheey et al. (1993 ▶); Joseph et al. (2004 ▶).

Experimental

Crystal data

C15H16N4S M = 284.39 Monoclinic, a = 10.011 (2) Å b = 8.888 (2) Å c = 16.256 (4) Å β = 94.528 (3)° V = 1441.9 (6) Å3 Z = 4 Mo Kα radiation μ = 0.22 mm−1 T = 153 K 0.32 × 0.28 × 0.22 mm

Data collection

Bruker P4 diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.932, T max = 0.953 14231 measured reflections 2828 independent reflections 2405 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.110 S = 1.06 2828 reflections 188 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.19 e Å−3 Δρmin = −0.20 e Å−3 Data collection: SMART (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811045739/fj2463sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811045739/fj2463Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811045739/fj2463Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H16N4SF(000) = 600.0
Mr = 284.39Dx = 1.310 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 8120 reflections
a = 10.011 (2) Åθ = 2.0–26.0°
b = 8.888 (2) ŵ = 0.22 mm1
c = 16.256 (4) ÅT = 153 K
β = 94.528 (3)°Block, yellow
V = 1441.9 (6) Å30.32 × 0.28 × 0.22 mm
Z = 4
Bruker P4 diffractometer2828 independent reflections
Radiation source: fine-focus sealed tube2405 reflections with I > 2σ(I)
graphiteRint = 0.031
Detector resolution: 8.33 pixels mm-1θmax = 26.0°, θmin = 2.0°
ω scansh = −12→12
Absorption correction: multi-scan (SADABS; Bruker, 2004)k = −10→10
Tmin = 0.932, Tmax = 0.953l = −20→20
14231 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.039H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.110w = 1/[σ2(Fo2) + (0.0606P)2 + 0.2366P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max = 0.014
2828 reflectionsΔρmax = 0.19 e Å3
188 parametersΔρmin = −0.20 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0104 (16)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.75460 (4)0.15132 (5)0.31975 (3)0.05808 (18)
N10.98755 (14)0.68420 (14)0.33757 (8)0.0466 (3)
N20.99018 (12)0.35758 (13)0.36663 (7)0.0413 (3)
N30.87523 (12)0.42001 (16)0.33015 (8)0.0459 (3)
N40.68025 (13)0.41370 (17)0.25113 (9)0.0552 (4)
C11.33165 (15)0.42244 (19)0.39734 (10)0.0496 (4)
H11.33330.49830.35800.059*
C21.44999 (16)0.3531 (2)0.42682 (12)0.0584 (5)
H21.53070.38200.40690.070*
C31.44848 (18)0.2420 (2)0.48527 (12)0.0604 (5)
H31.52800.19560.50480.072*
C41.32983 (18)0.1993 (2)0.51494 (11)0.0586 (5)
H41.32910.12480.55510.070*
C51.21090 (16)0.26692 (18)0.48536 (10)0.0474 (4)
H51.13050.23680.50530.057*
C61.21111 (14)0.37895 (16)0.42634 (9)0.0386 (3)
C71.08395 (14)0.45037 (16)0.39224 (8)0.0383 (3)
C81.07742 (14)0.61797 (16)0.39196 (9)0.0404 (3)
C91.15590 (16)0.70179 (18)0.44910 (10)0.0499 (4)
H91.21730.65460.48650.060*
C101.14187 (19)0.85641 (19)0.44978 (13)0.0600 (5)
H101.19280.91430.48820.072*
C111.05114 (18)0.92430 (19)0.39262 (12)0.0574 (4)
H111.04081.02830.39120.069*
C120.97729 (18)0.83393 (18)0.33834 (11)0.0527 (4)
H120.91650.87930.29980.063*
C130.77074 (15)0.33429 (18)0.29902 (9)0.0442 (4)
C140.56134 (19)0.3425 (3)0.21167 (14)0.0755 (6)
H14A0.57780.31400.15640.113*
H14B0.48770.41190.21010.113*
H14C0.54000.25470.24240.113*
C150.6980 (2)0.5728 (2)0.23277 (14)0.0770 (6)
H15A0.69450.63060.28240.115*
H15B0.62790.60510.19300.115*
H15C0.78330.58740.21080.115*
H3'0.8833 (15)0.511 (2)0.3188 (9)0.043 (4)*
U11U22U33U12U13U23
S10.0506 (3)0.0477 (3)0.0740 (3)−0.00580 (18)−0.0075 (2)−0.00052 (19)
N10.0516 (8)0.0409 (7)0.0469 (7)0.0035 (6)0.0016 (6)0.0030 (5)
N20.0353 (6)0.0410 (7)0.0462 (7)0.0030 (5)−0.0045 (5)0.0000 (5)
N30.0394 (7)0.0388 (7)0.0574 (8)0.0035 (5)−0.0087 (6)0.0003 (6)
N40.0427 (7)0.0588 (9)0.0613 (8)0.0069 (6)−0.0143 (6)−0.0006 (7)
C10.0441 (9)0.0505 (9)0.0542 (9)0.0001 (7)0.0042 (7)0.0044 (7)
C20.0347 (8)0.0697 (12)0.0705 (11)0.0005 (8)0.0022 (8)−0.0032 (9)
C30.0425 (9)0.0639 (11)0.0711 (11)0.0098 (8)−0.0182 (8)−0.0052 (9)
C40.0562 (10)0.0552 (10)0.0611 (10)0.0010 (8)−0.0157 (8)0.0113 (8)
C50.0418 (8)0.0478 (9)0.0513 (9)−0.0055 (7)−0.0045 (7)0.0039 (7)
C60.0363 (7)0.0361 (7)0.0421 (8)0.0002 (6)−0.0042 (6)−0.0050 (6)
C70.0372 (7)0.0394 (7)0.0380 (7)0.0016 (6)0.0014 (6)−0.0007 (6)
C80.0373 (7)0.0400 (8)0.0442 (8)0.0019 (6)0.0058 (6)0.0004 (6)
C90.0448 (9)0.0463 (9)0.0577 (9)−0.0007 (7)−0.0016 (7)−0.0048 (7)
C100.0582 (11)0.0457 (10)0.0756 (12)−0.0065 (8)0.0024 (9)−0.0123 (8)
C110.0634 (11)0.0360 (8)0.0745 (11)−0.0007 (8)0.0162 (9)−0.0006 (8)
C120.0595 (10)0.0438 (9)0.0553 (9)0.0074 (7)0.0069 (8)0.0092 (7)
C130.0373 (8)0.0499 (9)0.0444 (8)0.0043 (6)−0.0021 (6)−0.0052 (6)
C140.0502 (11)0.0935 (16)0.0781 (13)0.0042 (10)−0.0250 (10)−0.0092 (11)
C150.0699 (13)0.0660 (13)0.0902 (15)0.0183 (10)−0.0245 (11)0.0121 (11)
S1—C131.6712 (17)C5—C61.383 (2)
N1—C121.335 (2)C5—H50.9300
N1—C81.3461 (19)C6—C71.4898 (19)
N2—C71.2934 (18)C7—C81.491 (2)
N2—N31.3697 (17)C8—C91.386 (2)
N3—C131.3591 (19)C9—C101.381 (2)
N3—H3'0.837 (17)C9—H90.9300
N4—C131.3466 (19)C10—C111.385 (3)
N4—C141.452 (2)C10—H100.9300
N4—C151.459 (3)C11—C121.366 (2)
C1—C61.385 (2)C11—H110.9300
C1—C21.387 (2)C12—H120.9300
C1—H10.9300C14—H14A0.9600
C2—C31.371 (3)C14—H14B0.9600
C2—H20.9300C14—H14C0.9600
C3—C41.370 (3)C15—H15A0.9600
C3—H30.9300C15—H15B0.9600
C4—C51.385 (2)C15—H15C0.9600
C4—H40.9300
C12—N1—C8118.54 (14)N1—C8—C7117.75 (13)
C7—N2—N3116.40 (12)C9—C8—C7120.85 (13)
C13—N3—N2121.99 (13)C10—C9—C8119.18 (16)
C13—N3—H3'123.1 (11)C10—C9—H9120.4
N2—N3—H3'113.3 (11)C8—C9—H9120.4
C13—N4—C14121.18 (15)C9—C10—C11119.31 (16)
C13—N4—C15122.61 (14)C9—C10—H10120.3
C14—N4—C15116.16 (14)C11—C10—H10120.3
C6—C1—C2120.13 (16)C12—C11—C10118.02 (15)
C6—C1—H1119.9C12—C11—H11121.0
C2—C1—H1119.9C10—C11—H11121.0
C3—C2—C1120.23 (16)N1—C12—C11123.63 (16)
C3—C2—H2119.9N1—C12—H12118.2
C1—C2—H2119.9C11—C12—H12118.2
C4—C3—C2120.04 (16)N4—C13—N3112.61 (14)
C4—C3—H3120.0N4—C13—S1123.72 (12)
C2—C3—H3120.0N3—C13—S1123.65 (11)
C3—C4—C5120.19 (16)N4—C14—H14A109.5
C3—C4—H4119.9N4—C14—H14B109.5
C5—C4—H4119.9H14A—C14—H14B109.5
C6—C5—C4120.31 (15)N4—C14—H14C109.5
C6—C5—H5119.8H14A—C14—H14C109.5
C4—C5—H5119.8H14B—C14—H14C109.5
C5—C6—C1119.09 (14)N4—C15—H15A109.5
C5—C6—C7121.12 (13)N4—C15—H15B109.5
C1—C6—C7119.77 (13)H15A—C15—H15B109.5
N2—C7—C6115.17 (12)N4—C15—H15C109.5
N2—C7—C8127.26 (13)H15A—C15—H15C109.5
C6—C7—C8117.56 (12)H15B—C15—H15C109.5
N1—C8—C9121.30 (14)
C7—N2—N3—C13178.44 (14)N2—C7—C8—N1−23.7 (2)
C6—C1—C2—C3−0.5 (3)C6—C7—C8—N1157.05 (13)
C1—C2—C3—C4−0.2 (3)N2—C7—C8—C9152.63 (15)
C2—C3—C4—C50.8 (3)C6—C7—C8—C9−26.6 (2)
C3—C4—C5—C6−0.7 (3)N1—C8—C9—C10−0.4 (2)
C4—C5—C6—C10.0 (2)C7—C8—C9—C10−176.54 (16)
C4—C5—C6—C7178.48 (14)C8—C9—C10—C11−0.9 (3)
C2—C1—C6—C50.6 (2)C9—C10—C11—C121.0 (3)
C2—C1—C6—C7−177.91 (14)C8—N1—C12—C11−1.5 (3)
N3—N2—C7—C6−175.96 (12)C10—C11—C12—N10.2 (3)
N3—N2—C7—C84.8 (2)C14—N4—C13—N3179.72 (16)
C5—C6—C7—N2−50.15 (19)C15—N4—C13—N32.5 (2)
C1—C6—C7—N2128.32 (15)C14—N4—C13—S1−1.7 (2)
C5—C6—C7—C8129.21 (15)C15—N4—C13—S1−178.84 (15)
C1—C6—C7—C8−52.32 (19)N2—N3—C13—N4−166.98 (14)
C12—N1—C8—C91.5 (2)N2—N3—C13—S114.4 (2)
C12—N1—C8—C7177.81 (14)
Cg is the centroid of the N1/C8–C12 ring.
D—H···AD—HH···AD···AD—H···A
N3—H3'···N10.837 (17)1.869 (17)2.602 (2)145.4 (15)
C14—H14C···S10.962.573.030 (2)109.
C5—H5···Cgi0.932.663.536 (2)157
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the N1/C8–C12 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3′⋯N10.837 (17)1.869 (17)2.602 (2)145.4 (15)
C5—H5⋯Cgi0.932.663.536 (2)157

Symmetry code: (i) .

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