Literature DB >> 22199691

1-[2-(1H-Benzimidazol-2-yl)eth-yl]-1H-1,2,3-benzotriazole.

Zhong Zhang1, Wei Lu, Difeng Wu.   

Abstract

In the title compound, C(15)H(13)N(5), the N-containing heterocycles are linked by an ethyl-ene spacer in a gauche conformation, the N-C-C-C torsion angle along the linker being 60.1 (3)°. The dihedral angle between the terminal benzotriazole and benzimidazole rings is 39.02 (6)°. In the crystal, adjacent mol-ecules are connected by N-H⋯N hydrogen bonds, forming an infinite chain along the c axis. π-π stacking inter-actions [centroid-centroid distance = 3.8772 (7) Å] between the benzotriazole rings of neighbouring chains extend these chains into a supra-molecular sheet in the bc plane. Weak inter-molecular C-H⋯N inter-actions further stabilize the crystal structure.

Entities:  

Year:  2011        PMID: 22199691      PMCID: PMC3238838          DOI: 10.1107/S1600536811045442

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis and anti­viral activity of bis-heterocyclcic compounds containing both benzotriazole and benzimidazole, see: Pagani & Sparatore (1965 ▶); Paglietti et al. (1975 ▶); Katritzky et al. (1996 ▶); Yu et al. (2003 ▶); Tonelli et al. (2008 ▶). For the crystal structure of 1-(benzimidazol-2-ylmeth­yl)-1H-benzotriazole, see: Liu et al. (2007 ▶).

Experimental

Crystal data

C15H13N5 M = 263.30 Monoclinic, a = 6.3510 (13) Å b = 20.830 (4) Å c = 9.901 (2) Å β = 96.78 (3)° V = 1300.7 (5) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 294 K 0.37 × 0.32 × 0.26 mm

Data collection

Bruker APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001) ▶ T min = 0.969, T max = 0.978 10985 measured reflections 2290 independent reflections 1608 reflections with I > 2σ(I) R int = 0.071

Refinement

R[F 2 > 2σ(F 2)] = 0.063 wR(F 2) = 0.125 S = 1.01 2290 reflections 181 parameters H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.21 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL and DIAMOND (Brandenburg, 1999 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811045442/zj2029sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811045442/zj2029Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811045442/zj2029Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H13N5F(000) = 552
Mr = 263.30Dx = 1.345 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 10162 reflections
a = 6.3510 (13) Åθ = 3.2–27.8°
b = 20.830 (4) ŵ = 0.09 mm1
c = 9.901 (2) ÅT = 294 K
β = 96.78 (3)°Block, colourless
V = 1300.7 (5) Å30.37 × 0.32 × 0.26 mm
Z = 4
Bruker APEX CCD area-detector diffractometer2290 independent reflections
Radiation source: fine-focus sealed tube1608 reflections with I > 2σ(I)
graphiteRint = 0.071
phi and ω scansθmax = 25.0°, θmin = 3.2°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −7→7
Tmin = 0.969, Tmax = 0.978k = −24→24
10985 measured reflectionsl = −11→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.063Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.125H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.040P)2 + 0.8P] where P = (Fo2 + 2Fc2)/3
2290 reflections(Δ/σ)max = 0.001
181 parametersΔρmax = 0.18 e Å3
0 restraintsΔρmin = −0.21 e Å3
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C1−0.2105 (4)0.96993 (13)0.3185 (3)0.0476 (7)
H1−0.34260.96200.34680.057*
C2−0.1838 (5)1.01290 (14)0.2171 (3)0.0573 (8)
H2−0.30161.03460.17480.069*
C30.0144 (5)1.02507 (15)0.1755 (3)0.0567 (8)
H30.02521.05490.10680.068*
C40.1916 (5)0.99482 (14)0.2323 (3)0.0539 (8)
H40.32301.00280.20290.065*
C50.1695 (4)0.95122 (13)0.3364 (3)0.0414 (7)
C6−0.0285 (4)0.93888 (12)0.3764 (3)0.0367 (6)
C7−0.1427 (4)0.85935 (13)0.5476 (3)0.0448 (7)
H7A−0.26620.88600.55470.054*
H7B−0.07900.84930.63910.054*
C8−0.2120 (4)0.79717 (13)0.4733 (3)0.0435 (7)
H8A−0.31490.77540.52200.052*
H8B−0.28010.80740.38300.052*
C9−0.0301 (4)0.75382 (12)0.4618 (2)0.0344 (6)
C100.4117 (5)0.65844 (13)0.5972 (3)0.0482 (7)
H100.41800.65010.68990.058*
C110.5649 (5)0.63636 (13)0.5222 (3)0.0526 (8)
H110.67780.61270.56480.063*
C120.5546 (5)0.64870 (13)0.3839 (3)0.0498 (8)
H120.66150.63330.33610.060*
C130.3915 (4)0.68287 (13)0.3161 (3)0.0438 (7)
H130.38560.69040.22320.053*
C140.2348 (4)0.70614 (12)0.3900 (2)0.0344 (6)
C150.2474 (4)0.69362 (12)0.5293 (2)0.0363 (6)
N10.0085 (3)0.89470 (10)0.4772 (2)0.0388 (6)
N20.2169 (4)0.87999 (11)0.4968 (2)0.0491 (6)
N30.3165 (3)0.91386 (12)0.4137 (3)0.0530 (7)
N40.0740 (3)0.72406 (10)0.5709 (2)0.0398 (6)
H140.04390.72860.65120.060*
N50.0578 (3)0.74388 (10)0.3498 (2)0.0379 (5)
U11U22U33U12U13U23
C10.0375 (16)0.0444 (17)0.0615 (19)−0.0022 (14)0.0082 (14)−0.0019 (15)
C20.0480 (19)0.0470 (19)0.074 (2)0.0052 (15)−0.0048 (16)0.0073 (18)
C30.060 (2)0.0481 (18)0.061 (2)−0.0064 (16)0.0035 (17)0.0156 (16)
C40.0446 (18)0.0541 (19)0.065 (2)−0.0064 (15)0.0167 (16)0.0090 (17)
C50.0365 (15)0.0413 (16)0.0473 (17)−0.0015 (13)0.0086 (13)−0.0024 (14)
C60.0373 (16)0.0330 (15)0.0399 (16)−0.0013 (12)0.0045 (13)−0.0062 (13)
C70.0474 (17)0.0458 (17)0.0440 (17)−0.0007 (14)0.0173 (14)−0.0020 (14)
C80.0403 (16)0.0504 (17)0.0411 (16)−0.0085 (14)0.0103 (13)−0.0003 (14)
C90.0388 (15)0.0400 (15)0.0247 (14)−0.0109 (12)0.0045 (12)−0.0014 (12)
C100.0574 (19)0.0471 (17)0.0390 (16)−0.0050 (15)0.0007 (15)0.0113 (14)
C110.0498 (19)0.0397 (17)0.067 (2)0.0042 (14)0.0008 (16)0.0082 (16)
C120.0539 (19)0.0389 (17)0.059 (2)0.0011 (15)0.0152 (16)−0.0045 (15)
C130.0539 (18)0.0435 (17)0.0349 (15)−0.0027 (14)0.0092 (14)−0.0063 (13)
C140.0454 (16)0.0332 (14)0.0249 (13)−0.0068 (13)0.0057 (12)−0.0048 (12)
C150.0455 (16)0.0321 (15)0.0317 (14)−0.0060 (13)0.0063 (13)−0.0012 (12)
N10.0346 (13)0.0403 (13)0.0422 (13)−0.0008 (10)0.0072 (10)0.0007 (11)
N20.0369 (14)0.0555 (16)0.0547 (15)0.0026 (12)0.0045 (12)0.0074 (13)
N30.0338 (13)0.0617 (16)0.0645 (17)−0.0004 (12)0.0099 (12)0.0116 (14)
N40.0486 (14)0.0480 (14)0.0240 (12)−0.0074 (11)0.0095 (10)−0.0008 (10)
N50.0419 (13)0.0465 (13)0.0257 (11)−0.0022 (11)0.0057 (10)0.0004 (10)
C1—C21.370 (4)C8—H8B0.9700
C1—C61.388 (4)C9—N51.316 (3)
C1—H10.9300C9—N41.348 (3)
C2—C31.393 (4)C10—C111.372 (4)
C2—H20.9300C10—C151.383 (4)
C3—C41.353 (4)C10—H100.9300
C3—H30.9300C11—C121.387 (4)
C4—C51.394 (4)C11—H110.9300
C4—H40.9300C12—C131.366 (4)
C5—N31.376 (3)C12—H120.9300
C5—C61.386 (3)C13—C141.391 (3)
C6—N11.357 (3)C13—H130.9300
C7—N11.453 (3)C14—N51.391 (3)
C7—C81.529 (4)C14—C151.397 (3)
C7—H7A0.9700C15—N41.375 (3)
C7—H7B0.9700N1—N21.350 (3)
C8—C91.481 (4)N2—N31.303 (3)
C8—H8A0.9700N4—H140.8453
C2—C1—C6116.0 (3)N5—C9—N4112.7 (2)
C2—C1—H1122.0N5—C9—C8125.0 (2)
C6—C1—H1122.0N4—C9—C8122.1 (2)
C1—C2—C3122.0 (3)C11—C10—C15117.2 (3)
C1—C2—H2119.0C11—C10—H10121.4
C3—C2—H2119.0C15—C10—H10121.4
C4—C3—C2121.9 (3)C10—C11—C12121.3 (3)
C4—C3—H3119.0C10—C11—H11119.4
C2—C3—H3119.0C12—C11—H11119.4
C3—C4—C5117.3 (3)C13—C12—C11121.8 (3)
C3—C4—H4121.3C13—C12—H12119.1
C5—C4—H4121.3C11—C12—H12119.1
N3—C5—C6108.4 (2)C12—C13—C14118.1 (3)
N3—C5—C4131.2 (3)C12—C13—H13120.9
C6—C5—C4120.4 (3)C14—C13—H13120.9
N1—C6—C5104.6 (2)C13—C14—N5130.6 (2)
N1—C6—C1133.1 (2)C13—C14—C15119.6 (2)
C5—C6—C1122.3 (3)N5—C14—C15109.8 (2)
N1—C7—C8111.6 (2)N4—C15—C10133.1 (2)
N1—C7—H7A109.3N4—C15—C14104.8 (2)
C8—C7—H7A109.3C10—C15—C14122.1 (3)
N1—C7—H7B109.3N2—N1—C6109.9 (2)
C8—C7—H7B109.3N2—N1—C7120.6 (2)
H7A—C7—H7B108.0C6—N1—C7129.0 (2)
C9—C8—C7111.8 (2)N3—N2—N1109.1 (2)
C9—C8—H8A109.3N2—N3—C5108.0 (2)
C7—C8—H8A109.3C9—N4—C15107.9 (2)
C9—C8—H8B109.3C9—N4—H14124.0
C7—C8—H8B109.3C15—N4—H14127.7
H8A—C8—H8B107.9C9—N5—C14104.9 (2)
C6—C1—C2—C3−0.5 (4)N5—C14—C15—N40.5 (3)
C1—C2—C3—C40.5 (5)C13—C14—C15—C10−0.1 (4)
C2—C3—C4—C5−0.9 (5)N5—C14—C15—C10−178.3 (2)
C3—C4—C5—N3−179.5 (3)C5—C6—N1—N2−0.8 (3)
C3—C4—C5—C61.5 (4)C1—C6—N1—N2−179.3 (3)
N3—C5—C6—N10.4 (3)C5—C6—N1—C7−173.1 (2)
C4—C5—C6—N1179.6 (2)C1—C6—N1—C78.4 (5)
N3—C5—C6—C1179.1 (2)C8—C7—N1—N2−83.6 (3)
C4—C5—C6—C1−1.7 (4)C8—C7—N1—C688.0 (3)
C2—C1—C6—N1179.4 (3)C6—N1—N2—N31.0 (3)
C2—C1—C6—C51.2 (4)C7—N1—N2—N3174.1 (2)
N1—C7—C8—C960.1 (3)N1—N2—N3—C5−0.7 (3)
C7—C8—C9—N5−105.2 (3)C6—C5—N3—N20.2 (3)
C7—C8—C9—N469.2 (3)C4—C5—N3—N2−178.9 (3)
C15—C10—C11—C12−0.2 (4)N5—C9—N4—C151.9 (3)
C10—C11—C12—C13−0.4 (4)C8—C9—N4—C15−173.2 (2)
C11—C12—C13—C140.8 (4)C10—C15—N4—C9177.2 (3)
C12—C13—C14—N5177.2 (3)C14—C15—N4—C9−1.4 (3)
C12—C13—C14—C15−0.5 (4)N4—C9—N5—C14−1.5 (3)
C11—C10—C15—N4−177.9 (3)C8—C9—N5—C14173.4 (2)
C11—C10—C15—C140.5 (4)C13—C14—N5—C9−177.3 (3)
C13—C14—C15—N4178.7 (2)C15—C14—N5—C90.6 (3)
D—H···AD—HH···AD···AD—H···A
N4—H14···N5i0.842.042.855 (3)162
C1—H1···N3ii0.932.543.456 (3)167
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H14⋯N5i0.842.042.855 (3)162
C1—H1⋯N3ii0.932.543.456 (3)167

Symmetry codes: (i) ; (ii) .

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