Literature DB >> 22199633

Aqua-(4,4'-dimethyl-2,2'-bipyridine-κN,N')(nitrato-κO)(nitrato-κO,O')zinc.

Sadif A Shirvan1, Sara Haydari Dezfuli.   

Abstract

In the title compound, [Zn(NO(3))(2)(C(12)H(12)N(2))(H(2)O)], the Zn(II) atom is six-coordinated in a distorted octa-hedral geometry by two N atoms from a chelating 4,4'-dimethyl-2,2'-bipyridine ligand, one water O atom, one O atom from a monodentate nitrate anion and two O atoms from a chelating nitrate anion. In the crystal, there are aromatic π-π contacts between the pyridine rings [centroid-centroid distances = 3.9577 (13) Å] and inter-molecular O-H⋯O and C-H⋯O hydrogen bonds.

Entities:  

Year:  2011        PMID: 22199633      PMCID: PMC3238756          DOI: 10.1107/S1600536811050227

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Ahmadi et al. (2008 ▶); Alizadeh et al. (2010 ▶); Amani et al. (2009 ▶); Bellusci et al. (2008 ▶); Hojjat Kashani et al. (2008 ▶); Kalateh et al. (2008 ▶, 2010 ▶); Sakamoto et al. (2004 ▶); Sofetis et al. (2006 ▶); Willett et al. (2001 ▶); Yoshikawa et al. (2003 ▶); Yousefi et al. (2008 ▶).

Experimental

Crystal data

[Zn(NO3)2(C12H12N2)(H2O)] M = 391.66 Monoclinic, a = 10.9266 (5) Å b = 8.5717 (3) Å c = 16.8073 (7) Å β = 97.873 (4)° V = 1559.33 (11) Å3 Z = 4 Mo Kα radiation μ = 1.62 mm−1 T = 120 K 0.5 × 0.4 × 0.31 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.460, T max = 0.596 16739 measured reflections 4193 independent reflections 3596 reflections with I > 2σ(I) R int = 0.054

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.084 S = 1.08 4193 reflections 227 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.50 e Å−3 Δρmin = −0.65 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811050227/bt5709sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811050227/bt5709Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(NO3)2(C12H12N2)(H2O)]F(000) = 800
Mr = 391.66Dx = 1.668 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 16739 reflections
a = 10.9266 (5) Åθ = 2.1–29.2°
b = 8.5717 (3) ŵ = 1.62 mm1
c = 16.8073 (7) ÅT = 120 K
β = 97.873 (4)°Prism, colorless
V = 1559.33 (11) Å30.5 × 0.4 × 0.31 mm
Z = 4
Bruker APEXII CCD area-detector diffractometer3596 reflections with I > 2σ(I)
graphiteRint = 0.054
ω scansθmax = 29.2°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −14→14
Tmin = 0.460, Tmax = 0.596k = −11→11
16739 measured reflectionsl = −20→23
4193 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.084H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.0418P)2 + 0.5925P] where P = (Fo2 + 2Fc2)/3
4193 reflections(Δ/σ)max = 0.011
227 parametersΔρmax = 0.50 e Å3
0 restraintsΔρmin = −0.65 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.66295 (19)0.0759 (2)0.21188 (13)0.0223 (4)
H10.65980.13970.25630.027*
C20.77558 (18)0.0545 (3)0.18405 (13)0.0235 (4)
H20.84650.10180.21020.028*
C30.78166 (17)−0.0388 (2)0.11638 (12)0.0193 (4)
C40.90160 (18)−0.0652 (3)0.08374 (15)0.0266 (4)
H4A0.9514−0.13790.11750.032*
H4B0.9450.03190.08260.032*
H4C0.8849−0.10660.03030.032*
C50.67277 (17)−0.1087 (2)0.08084 (12)0.0180 (4)
H50.6732−0.17160.03580.022*
C60.56307 (16)−0.0844 (2)0.11273 (11)0.0154 (3)
C70.44364 (16)−0.1594 (2)0.07909 (11)0.0157 (3)
C80.43269 (17)−0.2639 (2)0.01571 (11)0.0178 (4)
H80.5013−0.2879−0.00920.021*
C90.31873 (18)−0.3335 (2)−0.01087 (12)0.0188 (4)
C100.3034 (2)−0.4469 (3)−0.07953 (14)0.0275 (4)
H10C0.2531−0.5329−0.06680.033*
H10B0.383−0.4849−0.08860.033*
H10A0.2643−0.3956−0.12710.033*
C110.21939 (18)−0.2944 (3)0.02924 (12)0.0220 (4)
H110.1423−0.33960.01420.026*
C120.23656 (17)−0.1886 (3)0.09121 (12)0.0227 (4)
H120.1693−0.1630.11710.027*
N10.55839 (15)0.0081 (2)0.17723 (10)0.0179 (3)
N20.34579 (14)−0.1203 (2)0.11628 (10)0.0180 (3)
N30.39927 (16)0.3475 (2)0.16842 (11)0.0222 (3)
N40.44300 (15)−0.0611 (2)0.36776 (10)0.0202 (3)
O10.41779 (13)0.27826 (17)0.23681 (8)0.0216 (3)
O20.36572 (15)0.2656 (2)0.10800 (9)0.0288 (3)
O30.41477 (16)0.4902 (2)0.16496 (11)0.0316 (4)
O40.37061 (13)−0.10009 (18)0.30217 (9)0.0224 (3)
O50.50246 (15)0.06073 (19)0.36678 (10)0.0287 (3)
O60.44574 (16)−0.1479 (2)0.42578 (10)0.0360 (4)
O70.19144 (14)0.0920 (2)0.20178 (10)0.0242 (3)
H7A0.169 (3)0.185 (4)0.1905 (18)0.036 (8)*
H7B0.156 (4)0.067 (4)0.243 (2)0.058 (11)*
Zn10.37859 (2)0.04435 (3)0.207009 (13)0.01710 (7)
U11U22U33U12U13U23
C10.0188 (9)0.0263 (11)0.0217 (10)−0.0027 (7)0.0022 (7)−0.0054 (8)
C20.0149 (8)0.0291 (11)0.0259 (10)−0.0042 (8)0.0002 (7)−0.0003 (8)
C30.0117 (8)0.0217 (9)0.0246 (9)0.0021 (7)0.0031 (7)0.0059 (8)
C40.0132 (8)0.0314 (12)0.0360 (12)0.0009 (8)0.0064 (8)0.0022 (9)
C50.0152 (8)0.0191 (9)0.0203 (9)0.0015 (7)0.0046 (7)0.0011 (7)
C60.0133 (8)0.0175 (9)0.0157 (8)0.0017 (6)0.0025 (6)0.0032 (6)
C70.0106 (8)0.0210 (9)0.0158 (8)−0.0002 (6)0.0024 (6)0.0025 (7)
C80.0152 (8)0.0207 (9)0.0182 (9)0.0006 (7)0.0047 (6)0.0011 (7)
C90.0185 (9)0.0212 (10)0.0164 (9)−0.0008 (7)0.0009 (7)0.0019 (7)
C100.0268 (10)0.0263 (11)0.0283 (11)−0.0032 (9)0.0003 (8)−0.0058 (9)
C110.0142 (8)0.0295 (11)0.0215 (9)−0.0022 (8)−0.0006 (7)0.0022 (8)
C120.0106 (8)0.0368 (12)0.0209 (9)−0.0003 (8)0.0026 (7)0.0007 (8)
N10.0139 (7)0.0210 (8)0.0189 (8)0.0010 (6)0.0026 (6)−0.0005 (6)
N20.0112 (7)0.0250 (9)0.0178 (8)0.0015 (6)0.0024 (5)−0.0008 (6)
N30.0190 (8)0.0264 (9)0.0232 (9)0.0038 (7)0.0099 (6)0.0031 (7)
N40.0160 (7)0.0248 (9)0.0189 (8)0.0005 (6)−0.0006 (6)−0.0003 (6)
O10.0255 (7)0.0218 (7)0.0182 (7)0.0021 (6)0.0055 (5)0.0024 (5)
O20.0269 (8)0.0409 (10)0.0195 (7)0.0022 (7)0.0063 (6)−0.0033 (6)
O30.0360 (9)0.0257 (8)0.0370 (9)0.0029 (7)0.0185 (7)0.0095 (7)
O40.0209 (7)0.0262 (7)0.0185 (7)−0.0056 (6)−0.0029 (5)0.0013 (6)
O50.0281 (8)0.0273 (8)0.0299 (8)−0.0102 (6)0.0011 (6)−0.0023 (6)
O60.0388 (9)0.0395 (10)0.0257 (8)−0.0091 (8)−0.0103 (7)0.0133 (7)
O70.0182 (7)0.0229 (8)0.0333 (9)0.0056 (6)0.0102 (6)0.0052 (6)
Zn10.01435 (11)0.02035 (12)0.01732 (12)0.00208 (9)0.00476 (7)−0.00014 (9)
C1—N11.342 (3)C10—H10B0.96
C1—C21.387 (3)C10—H10A0.96
C1—H10.93C11—C121.374 (3)
C2—C31.399 (3)C11—H110.93
C2—H20.93C12—N21.344 (2)
C3—C51.392 (3)C12—H120.93
C3—C41.506 (3)Zn1—N12.1157 (16)
C4—H4A0.96Zn1—N22.0727 (17)
C4—H4B0.96N3—O31.238 (3)
C4—H4C0.96N3—O21.248 (2)
C5—C61.394 (3)N3—O11.285 (2)
C5—H50.93N4—O61.223 (2)
C6—N11.350 (3)N4—O51.231 (2)
C6—C71.494 (2)N4—O41.309 (2)
C7—N21.352 (2)Zn1—O12.0965 (15)
C7—C81.385 (3)Zn1—O22.5143 (16)
C8—C91.397 (3)Zn1—O42.0340 (15)
C8—H80.93Zn1—O72.0752 (15)
C9—C111.395 (3)O7—H7A0.84 (3)
C9—C101.501 (3)O7—H7B0.87 (4)
C10—H10C0.96
N1—C1—C2122.57 (19)H10B—C10—H10A109.5
N1—C1—H1118.7C12—C11—C9119.35 (18)
C2—C1—H1118.7C12—C11—H11120.3
C1—C2—C3119.52 (18)C9—C11—H11120.3
C1—C2—H2120.2N2—C12—C11123.24 (18)
C3—C2—H2120.2N2—C12—H12118.4
C5—C3—C2117.51 (17)C11—C12—H12118.4
C5—C3—C4120.95 (19)C1—N1—C6118.65 (17)
C2—C3—C4121.53 (18)C1—N1—Zn1126.65 (14)
C3—C4—H4A109.5C6—N1—Zn1114.51 (12)
C3—C4—H4B109.5C12—N2—C7118.13 (18)
H4A—C4—H4B109.5C12—N2—Zn1125.71 (14)
C3—C4—H4C109.5C7—N2—Zn1116.15 (13)
H4A—C4—H4C109.5O3—N3—O2123.01 (19)
H4B—C4—H4C109.5O3—N3—O1119.53 (18)
C3—C5—C6120.01 (18)O2—N3—O1117.46 (18)
C3—C5—H5120O6—N4—O5124.81 (17)
C6—C5—H5120O6—N4—O4117.51 (17)
N1—C6—C5121.72 (17)O5—N4—O4117.68 (17)
N1—C6—C7115.43 (16)N3—O1—Zn1103.06 (12)
C5—C6—C7122.85 (18)N4—O4—Zn1114.88 (12)
N2—C7—C8121.69 (17)Zn1—O7—H7A116 (2)
N2—C7—C6115.03 (17)Zn1—O7—H7B118 (2)
C8—C7—C6123.26 (17)H7A—O7—H7B105 (3)
C7—C8—C9120.09 (17)O4—Zn1—N298.18 (7)
C7—C8—H8120O4—Zn1—O790.28 (6)
C9—C8—H8120N2—Zn1—O791.88 (6)
C11—C9—C8117.48 (18)O4—Zn1—O1115.06 (6)
C11—C9—C10120.98 (18)N2—Zn1—O1146.72 (6)
C8—C9—C10121.54 (18)O7—Zn1—O189.42 (6)
C9—C10—H10C109.5O4—Zn1—N1103.76 (6)
C9—C10—H10B109.5N2—Zn1—N178.38 (6)
H10C—C10—H10B109.5O7—Zn1—N1163.82 (7)
C9—C10—H10A109.5O1—Zn1—N191.77 (6)
H10C—C10—H10A109.5
N1—C1—C2—C31.2 (3)C6—C7—N2—Zn13.6 (2)
C1—C2—C3—C5−1.2 (3)O3—N3—O1—Zn1−179.98 (15)
C1—C2—C3—C4179.8 (2)O2—N3—O1—Zn10.18 (19)
C2—C3—C5—C60.1 (3)O6—N4—O4—Zn1−176.91 (15)
C4—C3—C5—C6179.08 (19)O5—N4—O4—Zn13.7 (2)
C3—C5—C6—N11.1 (3)N4—O4—Zn1—N2147.48 (13)
C3—C5—C6—C7−178.21 (18)N4—O4—Zn1—O7−120.58 (14)
N1—C6—C7—N22.1 (2)N4—O4—Zn1—O1−31.09 (15)
C5—C6—C7—N2−178.61 (18)N4—O4—Zn1—N167.52 (14)
N1—C6—C7—C8−176.59 (18)C12—N2—Zn1—O473.10 (18)
C5—C6—C7—C82.7 (3)C7—N2—Zn1—O4−107.81 (14)
N2—C7—C8—C9−0.7 (3)C12—N2—Zn1—O7−17.46 (18)
C6—C7—C8—C9177.87 (18)C7—N2—Zn1—O7161.64 (15)
C7—C8—C9—C11−0.7 (3)C12—N2—Zn1—O1−109.26 (19)
C7—C8—C9—C10179.82 (19)C7—N2—Zn1—O169.83 (18)
C8—C9—C11—C121.3 (3)C12—N2—Zn1—N1175.56 (18)
C10—C9—C11—C12−179.2 (2)C7—N2—Zn1—N1−5.34 (14)
C9—C11—C12—N2−0.6 (3)N3—O1—Zn1—O4−170.58 (10)
C2—C1—N1—C60.0 (3)N3—O1—Zn1—N212.00 (17)
C2—C1—N1—Zn1−174.67 (16)N3—O1—Zn1—O7−80.55 (12)
C5—C6—N1—C1−1.1 (3)N3—O1—Zn1—N183.32 (12)
C7—C6—N1—C1178.23 (17)C1—N1—Zn1—O4−83.06 (18)
C5—C6—N1—Zn1174.17 (14)C6—N1—Zn1—O4102.12 (14)
C7—C6—N1—Zn1−6.5 (2)C1—N1—Zn1—N2−178.76 (19)
C11—C12—N2—C7−0.8 (3)C6—N1—Zn1—N26.43 (14)
C11—C12—N2—Zn1178.30 (16)C1—N1—Zn1—O7127.3 (2)
C8—C7—N2—C121.4 (3)C6—N1—Zn1—O7−47.5 (3)
C6—C7—N2—C12−177.27 (17)C1—N1—Zn1—O133.29 (18)
C8—C7—N2—Zn1−177.75 (14)C6—N1—Zn1—O1−141.52 (14)
D—H···AD—HH···AD···AD—H···A
O7—H7A···O4i0.85 (3)1.90 (3)2.724 (2)163 (3)
O7—H7B···O3ii0.87 (4)1.94 (4)2.799 (2)174 (3)
C5—H5···O2iii0.932.533.420 (2)161
C8—H8···O2iii0.932.363.230 (2)156
C11—H11···O6iv0.932.443.284 (3)151
Table 1

Selected bond lengths (Å)

Zn1—N12.1157 (16)
Zn1—N22.0727 (17)
Zn1—O12.0965 (15)
Zn1—O22.5143 (16)
Zn1—O42.0340 (15)
Zn1—O72.0752 (15)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O7—H7A⋯O4i0.85 (3)1.90 (3)2.724 (2)163 (3)
O7—H7B⋯O3ii0.87 (4)1.94 (4)2.799 (2)174 (3)
C5—H5⋯O2iii0.932.533.420 (2)161
C8—H8⋯O2iii0.932.363.230 (2)156
C11—H11⋯O6iv0.932.443.284 (3)151

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  8 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Crystal chemistry of the 4,4'-dimethyl-2,2'bipyridine/copper bromide system.

Authors:  R D Willett; G Pon; C Nagy
Journal:  Inorg Chem       Date:  2001-08-13       Impact factor: 5.165

3.  Tetra-chlorido(4,4'-dimethyl-2,2'-bipyridine-κN,N')platinum(IV).

Authors:  Leila Hojjat Kashani; Vahid Amani; Mohammad Yousefi; Hamid Reza Khavasi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-06-13

4.  (4,4'-Dimethyl-2,2'-bipyridine-κN,N')(dimethyl sulfoxide-κO)diiodidocadmium(II).

Authors:  Khadijeh Kalateh; Roya Ahmadi; Vahid Amani
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-10

5.  Di-μ-bromido-bis-[bromido(4,4'-dimethyl-2,2'-bipyridine-κN,N')mercury(II)].

Authors:  Khadijeh Kalateh; Amin Ebadi; Roya Ahmadi; Vahid Amani; Hamid Reza Khavasi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-15

6.  Trichlorido(4,4'-dimethyl-2,2'-bipyridine-κN,N')(dimethyl sulfoxide-κO)indium(III).

Authors:  Roya Ahmadi; Khadijeh Kalateh; Anita Abedi; Vahid Amani; Hamid Reza Khavasi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-20

7.  (4,4'-Dimethyl-2,2'-bipyridine-κN,N')diiodidomercury(II).

Authors:  Mohammad Yousefi; Nasim Tadayon Pour; Vahid Amani; Hamid Reza Khavasi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-13

8.  Dibromido(4,4'-dimethyl-2,2'-bipyridine-κN,N')zinc(II).

Authors:  Robabeh Alizadeh; Parisa Mohammadi Eshlaghi; Vahid Amani
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-24
  8 in total
  3 in total

1.  Dibromido(4,4'-dimethyl-2,2'-bipyridine-κ(2)N,N')(dimethyl sulfoxide-κO)cadmium.

Authors:  Sadif A Shirvan; Sara Haydari Dezfuli
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-30

2.  cis-Chloridobis(4,4'-dimethyl-2,2'-bipyridine-κ(2)N,N')oxidovanadium(IV) chloride ethanol monosolvate monohydrate.

Authors:  Sadif A Shirvan; Sara Haydari Dezfuli; Elyas Golabi; Mohammad Amin Gholamzadeh
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-29

3.  Trichlorido(4,4'-dimethyl-2,2'-bipyridine-κ(2)N,N')(methanol-κO)indium(III) methanol monosolvate.

Authors:  Sadif A Shirvan; Sara Haydari Dezfuli
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-08-23
  3 in total

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