| Literature DB >> 22199633 |
Sadif A Shirvan1, Sara Haydari Dezfuli.
Abstract
In the title compound, [Zn(NO(3))(2)(C(12)H(12)N(2))(H(2)O)], the Zn(II) atom is six-coordinated in a distorted octa-hedral geometry by two N atoms from a chelating 4,4'-dimethyl-2,2'-bipyridine ligand, one water O atom, one O atom from a monodentate nitrate anion and two O atoms from a chelating nitrate anion. In the crystal, there are aromatic π-π contacts between the pyridine rings [centroid-centroid distances = 3.9577 (13) Å] and inter-molecular O-H⋯O and C-H⋯O hydrogen bonds.Entities:
Year: 2011 PMID: 22199633 PMCID: PMC3238756 DOI: 10.1107/S1600536811050227
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Zn(NO3)2(C12H12N2)(H2O)] | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 16739 reflections |
| θ = 2.1–29.2° | |
| µ = 1.62 mm−1 | |
| β = 97.873 (4)° | Prism, colorless |
| 0.5 × 0.4 × 0.31 mm | |
| Bruker APEXII CCD area-detector diffractometer | 3596 reflections with |
| graphite | |
| ω scans | θmax = 29.2°, θmin = 2.1° |
| Absorption correction: multi-scan ( | |
| 16739 measured reflections | |
| 4193 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 4193 reflections | (Δ/σ)max = 0.011 |
| 227 parameters | Δρmax = 0.50 e Å−3 |
| 0 restraints | Δρmin = −0.65 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.66295 (19) | 0.0759 (2) | 0.21188 (13) | 0.0223 (4) | |
| H1 | 0.6598 | 0.1397 | 0.2563 | 0.027* | |
| C2 | 0.77558 (18) | 0.0545 (3) | 0.18405 (13) | 0.0235 (4) | |
| H2 | 0.8465 | 0.1018 | 0.2102 | 0.028* | |
| C3 | 0.78166 (17) | −0.0388 (2) | 0.11638 (12) | 0.0193 (4) | |
| C4 | 0.90160 (18) | −0.0652 (3) | 0.08374 (15) | 0.0266 (4) | |
| H4A | 0.9514 | −0.1379 | 0.1175 | 0.032* | |
| H4B | 0.945 | 0.0319 | 0.0826 | 0.032* | |
| H4C | 0.8849 | −0.1066 | 0.0303 | 0.032* | |
| C5 | 0.67277 (17) | −0.1087 (2) | 0.08084 (12) | 0.0180 (4) | |
| H5 | 0.6732 | −0.1716 | 0.0358 | 0.022* | |
| C6 | 0.56307 (16) | −0.0844 (2) | 0.11273 (11) | 0.0154 (3) | |
| C7 | 0.44364 (16) | −0.1594 (2) | 0.07909 (11) | 0.0157 (3) | |
| C8 | 0.43269 (17) | −0.2639 (2) | 0.01571 (11) | 0.0178 (4) | |
| H8 | 0.5013 | −0.2879 | −0.0092 | 0.021* | |
| C9 | 0.31873 (18) | −0.3335 (2) | −0.01087 (12) | 0.0188 (4) | |
| C10 | 0.3034 (2) | −0.4469 (3) | −0.07953 (14) | 0.0275 (4) | |
| H10C | 0.2531 | −0.5329 | −0.0668 | 0.033* | |
| H10B | 0.383 | −0.4849 | −0.0886 | 0.033* | |
| H10A | 0.2643 | −0.3956 | −0.1271 | 0.033* | |
| C11 | 0.21939 (18) | −0.2944 (3) | 0.02924 (12) | 0.0220 (4) | |
| H11 | 0.1423 | −0.3396 | 0.0142 | 0.026* | |
| C12 | 0.23656 (17) | −0.1886 (3) | 0.09121 (12) | 0.0227 (4) | |
| H12 | 0.1693 | −0.163 | 0.1171 | 0.027* | |
| N1 | 0.55839 (15) | 0.0081 (2) | 0.17723 (10) | 0.0179 (3) | |
| N2 | 0.34579 (14) | −0.1203 (2) | 0.11628 (10) | 0.0180 (3) | |
| N3 | 0.39927 (16) | 0.3475 (2) | 0.16842 (11) | 0.0222 (3) | |
| N4 | 0.44300 (15) | −0.0611 (2) | 0.36776 (10) | 0.0202 (3) | |
| O1 | 0.41779 (13) | 0.27826 (17) | 0.23681 (8) | 0.0216 (3) | |
| O2 | 0.36572 (15) | 0.2656 (2) | 0.10800 (9) | 0.0288 (3) | |
| O3 | 0.41477 (16) | 0.4902 (2) | 0.16496 (11) | 0.0316 (4) | |
| O4 | 0.37061 (13) | −0.10009 (18) | 0.30217 (9) | 0.0224 (3) | |
| O5 | 0.50246 (15) | 0.06073 (19) | 0.36678 (10) | 0.0287 (3) | |
| O6 | 0.44574 (16) | −0.1479 (2) | 0.42578 (10) | 0.0360 (4) | |
| O7 | 0.19144 (14) | 0.0920 (2) | 0.20178 (10) | 0.0242 (3) | |
| H7A | 0.169 (3) | 0.185 (4) | 0.1905 (18) | 0.036 (8)* | |
| H7B | 0.156 (4) | 0.067 (4) | 0.243 (2) | 0.058 (11)* | |
| Zn1 | 0.37859 (2) | 0.04435 (3) | 0.207009 (13) | 0.01710 (7) |
| C1 | 0.0188 (9) | 0.0263 (11) | 0.0217 (10) | −0.0027 (7) | 0.0022 (7) | −0.0054 (8) |
| C2 | 0.0149 (8) | 0.0291 (11) | 0.0259 (10) | −0.0042 (8) | 0.0002 (7) | −0.0003 (8) |
| C3 | 0.0117 (8) | 0.0217 (9) | 0.0246 (9) | 0.0021 (7) | 0.0031 (7) | 0.0059 (8) |
| C4 | 0.0132 (8) | 0.0314 (12) | 0.0360 (12) | 0.0009 (8) | 0.0064 (8) | 0.0022 (9) |
| C5 | 0.0152 (8) | 0.0191 (9) | 0.0203 (9) | 0.0015 (7) | 0.0046 (7) | 0.0011 (7) |
| C6 | 0.0133 (8) | 0.0175 (9) | 0.0157 (8) | 0.0017 (6) | 0.0025 (6) | 0.0032 (6) |
| C7 | 0.0106 (8) | 0.0210 (9) | 0.0158 (8) | −0.0002 (6) | 0.0024 (6) | 0.0025 (7) |
| C8 | 0.0152 (8) | 0.0207 (9) | 0.0182 (9) | 0.0006 (7) | 0.0047 (6) | 0.0011 (7) |
| C9 | 0.0185 (9) | 0.0212 (10) | 0.0164 (9) | −0.0008 (7) | 0.0009 (7) | 0.0019 (7) |
| C10 | 0.0268 (10) | 0.0263 (11) | 0.0283 (11) | −0.0032 (9) | 0.0003 (8) | −0.0058 (9) |
| C11 | 0.0142 (8) | 0.0295 (11) | 0.0215 (9) | −0.0022 (8) | −0.0006 (7) | 0.0022 (8) |
| C12 | 0.0106 (8) | 0.0368 (12) | 0.0209 (9) | −0.0003 (8) | 0.0026 (7) | 0.0007 (8) |
| N1 | 0.0139 (7) | 0.0210 (8) | 0.0189 (8) | 0.0010 (6) | 0.0026 (6) | −0.0005 (6) |
| N2 | 0.0112 (7) | 0.0250 (9) | 0.0178 (8) | 0.0015 (6) | 0.0024 (5) | −0.0008 (6) |
| N3 | 0.0190 (8) | 0.0264 (9) | 0.0232 (9) | 0.0038 (7) | 0.0099 (6) | 0.0031 (7) |
| N4 | 0.0160 (7) | 0.0248 (9) | 0.0189 (8) | 0.0005 (6) | −0.0006 (6) | −0.0003 (6) |
| O1 | 0.0255 (7) | 0.0218 (7) | 0.0182 (7) | 0.0021 (6) | 0.0055 (5) | 0.0024 (5) |
| O2 | 0.0269 (8) | 0.0409 (10) | 0.0195 (7) | 0.0022 (7) | 0.0063 (6) | −0.0033 (6) |
| O3 | 0.0360 (9) | 0.0257 (8) | 0.0370 (9) | 0.0029 (7) | 0.0185 (7) | 0.0095 (7) |
| O4 | 0.0209 (7) | 0.0262 (7) | 0.0185 (7) | −0.0056 (6) | −0.0029 (5) | 0.0013 (6) |
| O5 | 0.0281 (8) | 0.0273 (8) | 0.0299 (8) | −0.0102 (6) | 0.0011 (6) | −0.0023 (6) |
| O6 | 0.0388 (9) | 0.0395 (10) | 0.0257 (8) | −0.0091 (8) | −0.0103 (7) | 0.0133 (7) |
| O7 | 0.0182 (7) | 0.0229 (8) | 0.0333 (9) | 0.0056 (6) | 0.0102 (6) | 0.0052 (6) |
| Zn1 | 0.01435 (11) | 0.02035 (12) | 0.01732 (12) | 0.00208 (9) | 0.00476 (7) | −0.00014 (9) |
| C1—N1 | 1.342 (3) | C10—H10B | 0.96 |
| C1—C2 | 1.387 (3) | C10—H10A | 0.96 |
| C1—H1 | 0.93 | C11—C12 | 1.374 (3) |
| C2—C3 | 1.399 (3) | C11—H11 | 0.93 |
| C2—H2 | 0.93 | C12—N2 | 1.344 (2) |
| C3—C5 | 1.392 (3) | C12—H12 | 0.93 |
| C3—C4 | 1.506 (3) | Zn1—N1 | 2.1157 (16) |
| C4—H4A | 0.96 | Zn1—N2 | 2.0727 (17) |
| C4—H4B | 0.96 | N3—O3 | 1.238 (3) |
| C4—H4C | 0.96 | N3—O2 | 1.248 (2) |
| C5—C6 | 1.394 (3) | N3—O1 | 1.285 (2) |
| C5—H5 | 0.93 | N4—O6 | 1.223 (2) |
| C6—N1 | 1.350 (3) | N4—O5 | 1.231 (2) |
| C6—C7 | 1.494 (2) | N4—O4 | 1.309 (2) |
| C7—N2 | 1.352 (2) | Zn1—O1 | 2.0965 (15) |
| C7—C8 | 1.385 (3) | Zn1—O2 | 2.5143 (16) |
| C8—C9 | 1.397 (3) | Zn1—O4 | 2.0340 (15) |
| C8—H8 | 0.93 | Zn1—O7 | 2.0752 (15) |
| C9—C11 | 1.395 (3) | O7—H7A | 0.84 (3) |
| C9—C10 | 1.501 (3) | O7—H7B | 0.87 (4) |
| C10—H10C | 0.96 | ||
| N1—C1—C2 | 122.57 (19) | H10B—C10—H10A | 109.5 |
| N1—C1—H1 | 118.7 | C12—C11—C9 | 119.35 (18) |
| C2—C1—H1 | 118.7 | C12—C11—H11 | 120.3 |
| C1—C2—C3 | 119.52 (18) | C9—C11—H11 | 120.3 |
| C1—C2—H2 | 120.2 | N2—C12—C11 | 123.24 (18) |
| C3—C2—H2 | 120.2 | N2—C12—H12 | 118.4 |
| C5—C3—C2 | 117.51 (17) | C11—C12—H12 | 118.4 |
| C5—C3—C4 | 120.95 (19) | C1—N1—C6 | 118.65 (17) |
| C2—C3—C4 | 121.53 (18) | C1—N1—Zn1 | 126.65 (14) |
| C3—C4—H4A | 109.5 | C6—N1—Zn1 | 114.51 (12) |
| C3—C4—H4B | 109.5 | C12—N2—C7 | 118.13 (18) |
| H4A—C4—H4B | 109.5 | C12—N2—Zn1 | 125.71 (14) |
| C3—C4—H4C | 109.5 | C7—N2—Zn1 | 116.15 (13) |
| H4A—C4—H4C | 109.5 | O3—N3—O2 | 123.01 (19) |
| H4B—C4—H4C | 109.5 | O3—N3—O1 | 119.53 (18) |
| C3—C5—C6 | 120.01 (18) | O2—N3—O1 | 117.46 (18) |
| C3—C5—H5 | 120 | O6—N4—O5 | 124.81 (17) |
| C6—C5—H5 | 120 | O6—N4—O4 | 117.51 (17) |
| N1—C6—C5 | 121.72 (17) | O5—N4—O4 | 117.68 (17) |
| N1—C6—C7 | 115.43 (16) | N3—O1—Zn1 | 103.06 (12) |
| C5—C6—C7 | 122.85 (18) | N4—O4—Zn1 | 114.88 (12) |
| N2—C7—C8 | 121.69 (17) | Zn1—O7—H7A | 116 (2) |
| N2—C7—C6 | 115.03 (17) | Zn1—O7—H7B | 118 (2) |
| C8—C7—C6 | 123.26 (17) | H7A—O7—H7B | 105 (3) |
| C7—C8—C9 | 120.09 (17) | O4—Zn1—N2 | 98.18 (7) |
| C7—C8—H8 | 120 | O4—Zn1—O7 | 90.28 (6) |
| C9—C8—H8 | 120 | N2—Zn1—O7 | 91.88 (6) |
| C11—C9—C8 | 117.48 (18) | O4—Zn1—O1 | 115.06 (6) |
| C11—C9—C10 | 120.98 (18) | N2—Zn1—O1 | 146.72 (6) |
| C8—C9—C10 | 121.54 (18) | O7—Zn1—O1 | 89.42 (6) |
| C9—C10—H10C | 109.5 | O4—Zn1—N1 | 103.76 (6) |
| C9—C10—H10B | 109.5 | N2—Zn1—N1 | 78.38 (6) |
| H10C—C10—H10B | 109.5 | O7—Zn1—N1 | 163.82 (7) |
| C9—C10—H10A | 109.5 | O1—Zn1—N1 | 91.77 (6) |
| H10C—C10—H10A | 109.5 | ||
| N1—C1—C2—C3 | 1.2 (3) | C6—C7—N2—Zn1 | 3.6 (2) |
| C1—C2—C3—C5 | −1.2 (3) | O3—N3—O1—Zn1 | −179.98 (15) |
| C1—C2—C3—C4 | 179.8 (2) | O2—N3—O1—Zn1 | 0.18 (19) |
| C2—C3—C5—C6 | 0.1 (3) | O6—N4—O4—Zn1 | −176.91 (15) |
| C4—C3—C5—C6 | 179.08 (19) | O5—N4—O4—Zn1 | 3.7 (2) |
| C3—C5—C6—N1 | 1.1 (3) | N4—O4—Zn1—N2 | 147.48 (13) |
| C3—C5—C6—C7 | −178.21 (18) | N4—O4—Zn1—O7 | −120.58 (14) |
| N1—C6—C7—N2 | 2.1 (2) | N4—O4—Zn1—O1 | −31.09 (15) |
| C5—C6—C7—N2 | −178.61 (18) | N4—O4—Zn1—N1 | 67.52 (14) |
| N1—C6—C7—C8 | −176.59 (18) | C12—N2—Zn1—O4 | 73.10 (18) |
| C5—C6—C7—C8 | 2.7 (3) | C7—N2—Zn1—O4 | −107.81 (14) |
| N2—C7—C8—C9 | −0.7 (3) | C12—N2—Zn1—O7 | −17.46 (18) |
| C6—C7—C8—C9 | 177.87 (18) | C7—N2—Zn1—O7 | 161.64 (15) |
| C7—C8—C9—C11 | −0.7 (3) | C12—N2—Zn1—O1 | −109.26 (19) |
| C7—C8—C9—C10 | 179.82 (19) | C7—N2—Zn1—O1 | 69.83 (18) |
| C8—C9—C11—C12 | 1.3 (3) | C12—N2—Zn1—N1 | 175.56 (18) |
| C10—C9—C11—C12 | −179.2 (2) | C7—N2—Zn1—N1 | −5.34 (14) |
| C9—C11—C12—N2 | −0.6 (3) | N3—O1—Zn1—O4 | −170.58 (10) |
| C2—C1—N1—C6 | 0.0 (3) | N3—O1—Zn1—N2 | 12.00 (17) |
| C2—C1—N1—Zn1 | −174.67 (16) | N3—O1—Zn1—O7 | −80.55 (12) |
| C5—C6—N1—C1 | −1.1 (3) | N3—O1—Zn1—N1 | 83.32 (12) |
| C7—C6—N1—C1 | 178.23 (17) | C1—N1—Zn1—O4 | −83.06 (18) |
| C5—C6—N1—Zn1 | 174.17 (14) | C6—N1—Zn1—O4 | 102.12 (14) |
| C7—C6—N1—Zn1 | −6.5 (2) | C1—N1—Zn1—N2 | −178.76 (19) |
| C11—C12—N2—C7 | −0.8 (3) | C6—N1—Zn1—N2 | 6.43 (14) |
| C11—C12—N2—Zn1 | 178.30 (16) | C1—N1—Zn1—O7 | 127.3 (2) |
| C8—C7—N2—C12 | 1.4 (3) | C6—N1—Zn1—O7 | −47.5 (3) |
| C6—C7—N2—C12 | −177.27 (17) | C1—N1—Zn1—O1 | 33.29 (18) |
| C8—C7—N2—Zn1 | −177.75 (14) | C6—N1—Zn1—O1 | −141.52 (14) |
| H··· | ||||
| O7—H7A···O4i | 0.85 (3) | 1.90 (3) | 2.724 (2) | 163 (3) |
| O7—H7B···O3ii | 0.87 (4) | 1.94 (4) | 2.799 (2) | 174 (3) |
| C5—H5···O2iii | 0.93 | 2.53 | 3.420 (2) | 161 |
| C8—H8···O2iii | 0.93 | 2.36 | 3.230 (2) | 156 |
| C11—H11···O6iv | 0.93 | 2.44 | 3.284 (3) | 151 |
Selected bond lengths (Å)
| Zn1—N1 | 2.1157 (16) |
| Zn1—N2 | 2.0727 (17) |
| Zn1—O1 | 2.0965 (15) |
| Zn1—O2 | 2.5143 (16) |
| Zn1—O4 | 2.0340 (15) |
| Zn1—O7 | 2.0752 (15) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O7—H7 | 0.85 (3) | 1.90 (3) | 2.724 (2) | 163 (3) |
| O7—H7 | 0.87 (4) | 1.94 (4) | 2.799 (2) | 174 (3) |
| C5—H5⋯O2iii | 0.93 | 2.53 | 3.420 (2) | 161 |
| C8—H8⋯O2iii | 0.93 | 2.36 | 3.230 (2) | 156 |
| C11—H11⋯O6iv | 0.93 | 2.44 | 3.284 (3) | 151 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .