Literature DB >> 22196724

The microbial opsin family of optogenetic tools.

Feng Zhang1, Johannes Vierock, Ofer Yizhar, Lief E Fenno, Satoshi Tsunoda, Arash Kianianmomeni, Matthias Prigge, Andre Berndt, John Cushman, Jürgen Polle, Jon Magnuson, Peter Hegemann, Karl Deisseroth.   

Abstract

The capture and utilization of light is an exquisitely evolved process. The single-component microbial opsins, although more limited than multicomponent cascades in processing, display unparalleled compactness and speed. Recent advances in understanding microbial opsins have been driven by molecular engineering for optogenetics and by comparative genomics. Here we provide a Primer on these light-activated ion channels and pumps, describe a group of opsins bridging prior categories, and explore the convergence of molecular engineering and genomic discovery for the utilization and understanding of these remarkable molecular machines.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 22196724      PMCID: PMC4166436          DOI: 10.1016/j.cell.2011.12.004

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  98 in total

Review 1.  Halorhodopsin: light-driven ion pumping made simple?

Authors:  Lars-Oliver Essen
Journal:  Curr Opin Struct Biol       Date:  2002-08       Impact factor: 6.809

2.  Fast manipulation of cellular cAMP level by light in vivo.

Authors:  Saskia Schröder-Lang; Martin Schwärzel; Reinhard Seifert; Timo Strünker; Suneel Kateriya; Jens Looser; Masakatsu Watanabe; U Benjamin Kaupp; Peter Hegemann; Georg Nagel
Journal:  Nat Methods       Date:  2006-11-26       Impact factor: 28.547

Review 3.  Circuit-breakers: optical technologies for probing neural signals and systems.

Authors:  Feng Zhang; Alexander M Aravanis; Antoine Adamantidis; Luis de Lecea; Karl Deisseroth
Journal:  Nat Rev Neurosci       Date:  2007-08       Impact factor: 34.870

4.  Conformational changes of channelrhodopsin-2.

Authors:  Ionela Radu; Christian Bamann; Melanie Nack; Georg Nagel; Ernst Bamberg; Joachim Heberle
Journal:  J Am Chem Soc       Date:  2009-06-03       Impact factor: 15.419

5.  Monitoring light-induced structural changes of Channelrhodopsin-2 by UV-visible and Fourier transform infrared spectroscopy.

Authors:  Eglof Ritter; Katja Stehfest; Andre Berndt; Peter Hegemann; Franz J Bartl
Journal:  J Biol Chem       Date:  2008-10-16       Impact factor: 5.157

6.  Red-shifted optogenetic excitation: a tool for fast neural control derived from Volvox carteri.

Authors:  Feng Zhang; Matthias Prigge; Florent Beyrière; Satoshi P Tsunoda; Joanna Mattis; Ofer Yizhar; Peter Hegemann; Karl Deisseroth
Journal:  Nat Neurosci       Date:  2008-04-23       Impact factor: 24.884

7.  Structure, dynamics, and function of bacteriorhodopsin.

Authors:  G Büldt; J Heberle; N A Dencher; H J Sass
Journal:  J Protein Chem       Date:  1998-08

8.  Structure of an early intermediate in the M-state phase of the bacteriorhodopsin photocycle.

Authors:  M T Facciotti; S Rouhani; F T Burkard; F M Betancourt; K H Downing; R B Rose; G McDermott; R M Glaeser
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

9.  Ultra light-sensitive and fast neuronal activation with the Ca²+-permeable channelrhodopsin CatCh.

Authors:  Sonja Kleinlogel; Katrin Feldbauer; Robert E Dempski; Heike Fotis; Phillip G Wood; Christian Bamann; Ernst Bamberg
Journal:  Nat Neurosci       Date:  2011-03-13       Impact factor: 24.884

10.  The genome sequence of the model ascomycete fungus Podospora anserina.

Authors:  Eric Espagne; Olivier Lespinet; Fabienne Malagnac; Corinne Da Silva; Olivier Jaillon; Betina M Porcel; Arnaud Couloux; Jean-Marc Aury; Béatrice Ségurens; Julie Poulain; Véronique Anthouard; Sandrine Grossetete; Hamid Khalili; Evelyne Coppin; Michelle Déquard-Chablat; Marguerite Picard; Véronique Contamine; Sylvie Arnaise; Anne Bourdais; Véronique Berteaux-Lecellier; Daniel Gautheret; Ronald P de Vries; Evy Battaglia; Pedro M Coutinho; Etienne Gj Danchin; Bernard Henrissat; Riyad El Khoury; Annie Sainsard-Chanet; Antoine Boivin; Bérangère Pinan-Lucarré; Carole H Sellem; Robert Debuchy; Patrick Wincker; Jean Weissenbach; Philippe Silar
Journal:  Genome Biol       Date:  2008-05-06       Impact factor: 13.583

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  196 in total

1.  Structural biology: Ion channel in the spotlight.

Authors:  Oliver P Ernst; Thomas P Sakmar
Journal:  Nature       Date:  2012-02-15       Impact factor: 49.962

2.  Structural foundations of optogenetics: Determinants of channelrhodopsin ion selectivity.

Authors:  Andre Berndt; Soo Yeun Lee; Jonas Wietek; Charu Ramakrishnan; Elizabeth E Steinberg; Asim J Rashid; Hoseok Kim; Sungmo Park; Adam Santoro; Paul W Frankland; Shrivats M Iyer; Sally Pak; Sofie Ährlund-Richter; Scott L Delp; Robert C Malenka; Sheena A Josselyn; Marie Carlén; Peter Hegemann; Karl Deisseroth
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-22       Impact factor: 11.205

Review 3.  Optogenetics enlightens neuroscience drug discovery.

Authors:  Chenchen Song; Thomas Knöpfel
Journal:  Nat Rev Drug Discov       Date:  2015-11-27       Impact factor: 84.694

Review 4.  Optogenetic tools for modulating and probing the epileptic network.

Authors:  Mingrui Zhao; Rose Alleva; Hongtao Ma; Andy G S Daniel; Theodore H Schwartz
Journal:  Epilepsy Res       Date:  2015-06-21       Impact factor: 3.045

5.  Characterization of a highly efficient blue-shifted channelrhodopsin from the marine alga Platymonas subcordiformis.

Authors:  Elena G Govorunova; Oleg A Sineshchekov; Hai Li; Roger Janz; John L Spudich
Journal:  J Biol Chem       Date:  2013-08-30       Impact factor: 5.157

Review 6.  Microbial and animal rhodopsins: structures, functions, and molecular mechanisms.

Authors:  Oliver P Ernst; David T Lodowski; Marcus Elstner; Peter Hegemann; Leonid S Brown; Hideki Kandori
Journal:  Chem Rev       Date:  2013-12-23       Impact factor: 60.622

7.  A blue-shifted light-driven proton pump for neural silencing.

Authors:  Yuki Sudo; Ayako Okazaki; Hikaru Ono; Jin Yagasaki; Seiya Sugo; Motoshi Kamiya; Louisa Reissig; Keiichi Inoue; Kunio Ihara; Hideki Kandori; Shin Takagi; Shigehiko Hayashi
Journal:  J Biol Chem       Date:  2013-05-28       Impact factor: 5.157

Review 8.  Algal photoreceptors: in vivo functions and potential applications.

Authors:  Arash Kianianmomeni; Armin Hallmann
Journal:  Planta       Date:  2013-10-01       Impact factor: 4.116

Review 9.  Optogenetics.

Authors:  Sarah C P Williams; Karl Deisseroth
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-08       Impact factor: 11.205

Review 10.  Cardiac optogenetics.

Authors:  Emilia Entcheva
Journal:  Am J Physiol Heart Circ Physiol       Date:  2013-03-01       Impact factor: 4.733

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