Literature DB >> 22195205

Implementation of a platform dedicated to the biomedical analysis terminologies management.

Sylvie Cormont1, Pierre-Yves Vandenbussche, Antoine Buemi, Jean Delahousse, Eric Lepage, Jean Charlet.   

Abstract

BACKGROUND AND OBJECTIVES: Assistance Publique - Hôpitaux de Paris (AP-HP) is implementing a new laboratory management system (LMS) common to the 12 hospital groups. First step to this process was to acquire a biological analysis dictionary. This dictionary is interfaced with the international nomenclature LOINC, and has been developed in collaboration with experts from all biological disciplines. In this paper we describe in three steps (modeling, data migration and integration/verification) the implementation of a platform for publishing and maintaining the AP-HP laboratory data dictionary (AnaBio).
MATERIAL AND METHODS: Due to data complexity and volume, setting up a platform dedicated to the terminology management was a key requirement. This is an enhancement tackling identified weaknesses of previous spreadsheet tool. Our core model allows interoperability regarding data exchange standards and dictionary evolution.
RESULTS: We completed our goals within one year. In addition, structuring data representation has lead to a significant data quality improvement (impacting more than 10% of data). The platform is active in the 21 hospitals of the institution spread into 165 laboratories.

Entities:  

Keywords:  Authoring framework; Biological analysis; Controlled vocabulary; LOINC; Nomenclature; Standardization

Mesh:

Year:  2011        PMID: 22195205      PMCID: PMC3243140     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  7 in total

1.  [Names-Lab : a model for the standardization of biology message exchanges].

Authors:  S Cormont; A Erman; Y Burckel; A Carayon
Journal:  Ann Biol Clin (Paris)       Date:  2002 Mar-Apr       Impact factor: 0.459

2.  LOINC, a universal standard for identifying laboratory observations: a 5-year update.

Authors:  Clement J McDonald; Stanley M Huff; Jeffrey G Suico; Gilbert Hill; Dennis Leavelle; Raymond Aller; Arden Forrey; Kathy Mercer; Georges DeMoor; John Hook; Warren Williams; James Case; Pat Maloney
Journal:  Clin Chem       Date:  2003-04       Impact factor: 8.327

3.  A characterization of local LOINC mapping for laboratory tests in three large institutions.

Authors:  M C Lin; D J Vreeman; C J McDonald; S M Huff
Journal:  Methods Inf Med       Date:  2010-08-20       Impact factor: 2.176

4.  Utilizing the UMLS for semantic mapping between terminologies.

Authors:  Kin Wah Fung; Olivier Bodenreider
Journal:  AMIA Annu Symp Proc       Date:  2005

5.  Towards a top-domain ontology for linking biomedical ontologies.

Authors:  Holger Stenzhorn; Elena Beisswanger; Stefan Schulz
Journal:  Stud Health Technol Inform       Date:  2007

6.  LexGrid: a framework for representing, storing, and querying biomedical terminologies from simple to sublime.

Authors:  Jyotishman Pathak; Harold R Solbrig; James D Buntrock; Thomas M Johnson; Christopher G Chute
Journal:  J Am Med Inform Assoc       Date:  2009-03-04       Impact factor: 4.497

7.  Functional requirements of terminology services for coupling interface terminologies to reference terminologies.

Authors:  Christel Daniel; Antoine Buemi; Laurent Mazuel; David Ouagne; Jean Charlet
Journal:  Stud Health Technol Inform       Date:  2009
  7 in total
  2 in total

1.  Implementation and management of a biomedical observation dictionary in a large healthcare information system.

Authors:  Pierre-Yves Vandenbussche; Sylvie Cormont; Christophe André; Christel Daniel; Jean Delahousse; Jean Charlet; Eric Lepage
Journal:  J Am Med Inform Assoc       Date:  2013-05-01       Impact factor: 4.497

2.  Knowledge-Based Biomedical Data Science.

Authors:  Tiffany J Callahan; Ignacio J Tripodi; Harrison Pielke-Lombardo; Lawrence E Hunter
Journal:  Annu Rev Biomed Data Sci       Date:  2020-04-07
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.