Literature DB >> 22194288

Recruitment of members from the rare biosphere of marine bacterioplankton communities after an environmental disturbance.

Johanna Sjöstedt1, Per Koch-Schmidt, Mikael Pontarp, Björn Canbäck, Anders Tunlid, Per Lundberg, Ake Hagström, Lasse Riemann.   

Abstract

A bacterial community may be resistant to environmental disturbances if some of its species show metabolic flexibility and physiological tolerance to the changing conditions. Alternatively, disturbances can change the composition of the community and thereby potentially affect ecosystem processes. The impact of disturbance on the composition of bacterioplankton communities was examined in continuous seawater cultures. Bacterial assemblages from geographically closely connected areas, the Baltic Sea (salinity 7 and high dissolved organic carbon [DOC]) and Skagerrak (salinity 28 and low DOC), were exposed to gradual opposing changes in salinity and DOC over a 3-week period such that the Baltic community was exposed to Skagerrak salinity and DOC and vice versa. Denaturing gradient gel electrophoresis and clone libraries of PCR-amplified 16S rRNA genes showed that the composition of the transplanted communities differed significantly from those held at constant salinity. Despite this, the growth yields (number of cells ml(-1)) were similar, which suggests similar levels of substrate utilization. Deep 454 pyrosequencing of 16S rRNA genes showed that the composition of the disturbed communities had changed due to the recruitment of phylotypes present in the rare biosphere of the original community. The study shows that members of the rare biosphere can become abundant in a bacterioplankton community after disturbance and that those bacteria can have important roles in maintaining ecosystem processes.

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Year:  2011        PMID: 22194288      PMCID: PMC3294490          DOI: 10.1128/AEM.05542-11

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  48 in total

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Journal:  Appl Environ Microbiol       Date:  2000-02       Impact factor: 4.792

2.  Dormancy contributes to the maintenance of microbial diversity.

Authors:  Stuart E Jones; Jay T Lennon
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-15       Impact factor: 11.205

3.  Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB.

Authors:  T Z DeSantis; P Hugenholtz; N Larsen; M Rojas; E L Brodie; K Keller; T Huber; D Dalevi; P Hu; G L Andersen
Journal:  Appl Environ Microbiol       Date:  2006-07       Impact factor: 4.792

4.  RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models.

Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2006-08-23       Impact factor: 6.937

5.  Colloquium paper: resistance, resilience, and redundancy in microbial communities.

Authors:  Steven D Allison; Jennifer B H Martiny
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-11       Impact factor: 11.205

6.  Accurate determination of microbial diversity from 454 pyrosequencing data.

Authors:  Christopher Quince; Anders Lanzén; Thomas P Curtis; Russell J Davenport; Neil Hall; Ian M Head; L Fiona Read; William T Sloan
Journal:  Nat Methods       Date:  2009-08-09       Impact factor: 28.547

7.  Salinity as a structuring factor for the composition and performance of bacterioplankton degrading riverine DOC.

Authors:  Silke Langenheder; Veljo Kisand; Johan Wikner; Lars J Tranvik
Journal:  FEMS Microbiol Ecol       Date:  2003-07-01       Impact factor: 4.194

8.  Ironing out the wrinkles in the rare biosphere through improved OTU clustering.

Authors:  Susan M Huse; David Mark Welch; Hilary G Morrison; Mitchell L Sogin
Journal:  Environ Microbiol       Date:  2010-03-11       Impact factor: 5.491

9.  Description of Idiomarina insulisalsae sp. nov., isolated from the soil of a sea salt evaporation pond, proposal to transfer the species of the genus Pseudidiomarina to the genus Idiomarina and emended description of the genus Idiomarina.

Authors:  Marco Taborda; André Antunes; Igor Tiago; António Veríssimo; M Fernanda Nobre; Milton S da Costa
Journal:  Syst Appl Microbiol       Date:  2009-07-22       Impact factor: 4.022

10.  Diversity and abundance of freshwater Actinobacteria along environmental gradients in the brackish northern Baltic Sea.

Authors:  Karin Holmfeldt; Claudia Dziallas; Josefin Titelman; Kirsten Pohlmann; Hans-Peter Grossart; Lasse Riemann
Journal:  Environ Microbiol       Date:  2009-04-29       Impact factor: 5.491

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  34 in total

1.  Marine bacterial community structure resilience to changes in protist predation under phytoplankton bloom conditions.

Authors:  Federico Baltar; Joakim Palovaara; Fernando Unrein; Philippe Catala; Karel Horňák; Karel Šimek; Dolors Vaqué; Ramon Massana; Josep M Gasol; Jarone Pinhassi
Journal:  ISME J       Date:  2015-08-11       Impact factor: 10.302

Review 2.  Ecology and exploration of the rare biosphere.

Authors:  Michael D J Lynch; Josh D Neufeld
Journal:  Nat Rev Microbiol       Date:  2015-03-02       Impact factor: 60.633

3.  Identifying the core seed bank of a complex boreal bacterial metacommunity.

Authors:  Clara Ruiz-González; Juan Pablo Niño-García; Steven W Kembel; Paul A Del Giorgio
Journal:  ISME J       Date:  2017-06-06       Impact factor: 10.302

4.  Distinctive microbial community structure in highly stratified deep-sea brine water columns.

Authors:  S Bougouffa; J K Yang; O O Lee; Y Wang; Z Batang; A Al-Suwailem; P Y Qian
Journal:  Appl Environ Microbiol       Date:  2013-03-29       Impact factor: 4.792

5.  Can marine bacteria be recruited from freshwater sources and the air?

Authors:  Jérôme Comte; Eva S Lindström; Alexander Eiler; Silke Langenheder
Journal:  ISME J       Date:  2014-06-06       Impact factor: 10.302

6.  Hemolymph microbiome of Pacific oysters in response to temperature, temperature stress and infection.

Authors:  Ana Lokmer; Karl Mathias Wegner
Journal:  ISME J       Date:  2014-09-02       Impact factor: 10.302

7.  Effects of ecological engineered oxygenation on the bacterial community structure in an anoxic fjord in western Sweden.

Authors:  Michael Forth; Bengt Liljebladh; Anders Stigebrandt; Per O J Hall; Alexander H Treusch
Journal:  ISME J       Date:  2014-09-19       Impact factor: 10.302

8.  From Rare to Dominant: a Fine-Tuned Soil Bacterial Bloom during Petroleum Hydrocarbon Bioremediation.

Authors:  Sebastián Fuentes; Bárbara Barra; J Gregory Caporaso; Michael Seeger
Journal:  Appl Environ Microbiol       Date:  2015-11-20       Impact factor: 4.792

9.  Temperature-driven shifts in the epibiotic bacterial community composition of the brown macroalga Fucus vesiculosus.

Authors:  Stephanie B Stratil; Sven C Neulinger; Henrik Knecht; Anette K Friedrichs; Martin Wahl
Journal:  Microbiologyopen       Date:  2013-03-13       Impact factor: 3.139

10.  Importance of inoculum properties on the structure and growth of bacterial communities during Recolonisation of humus soil with different pH.

Authors:  Marie Pettersson; Erland Bååth
Journal:  Microb Ecol       Date:  2013-03-20       Impact factor: 4.552

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