Literature DB >> 22189001

Single-cell protein analysis.

Meiye Wu1, Anup K Singh.   

Abstract

Heterogeneity of cellular systems has been widely recognized but only recently have tools become available that allow probing of genes and proteins in single cells to understand it. While the advancement in single cell genomic analysis has been greatly aided by the power of amplification techniques (e.g. PCR), analysis of proteins in single cells has proven to be more challenging. However, recent advances in multi-parameter flow cytometry, microscopy, microfluidics and other techniques have made it possible to measure wide variety of proteins in single cells. In this review, we highlight key recent developments in analysis of proteins in a single cell (excluding imaging-based methods), and discuss their significance in biological research.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 22189001      PMCID: PMC3283030          DOI: 10.1016/j.copbio.2011.11.023

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  35 in total

1.  Identification of proteins in single-cell capillary electrophoresis fingerprints based on comigration with standard proteins.

Authors:  Shen Hu; Zhang Le; Richard Newitt; Ruedi Aebersold; James R Kraly; Megan Jones; Norman J Dovichi
Journal:  Anal Chem       Date:  2003-07-15       Impact factor: 6.986

2.  Comparison of the ELISPOT and cytokine flow cytometry assays for the enumeration of antigen-specific T cells.

Authors:  Annika C Karlsson; Jeffrey N Martin; Sophie R Younger; Barry M Bredt; Lorrie Epling; Rollie Ronquillo; Arjun Varma; Steven G Deeks; Joseph M McCune; Douglas F Nixon; Elizabeth Sinclair
Journal:  J Immunol Methods       Date:  2003-12       Impact factor: 2.303

Review 3.  Seventeen-colour flow cytometry: unravelling the immune system.

Authors:  Stephen P Perfetto; Pratip K Chattopadhyay; Mario Roederer
Journal:  Nat Rev Immunol       Date:  2004-08       Impact factor: 53.106

4.  Causal protein-signaling networks derived from multiparameter single-cell data.

Authors:  Karen Sachs; Omar Perez; Dana Pe'er; Douglas A Lauffenburger; Garry P Nolan
Journal:  Science       Date:  2005-04-22       Impact factor: 47.728

5.  Fluorescent cell barcoding in flow cytometry allows high-throughput drug screening and signaling profiling.

Authors:  Peter O Krutzik; Garry P Nolan
Journal:  Nat Methods       Date:  2006-05       Impact factor: 28.547

6.  Counting low-copy number proteins in a single cell.

Authors:  Bo Huang; Hongkai Wu; Devaki Bhaya; Arthur Grossman; Sebastien Granier; Brian K Kobilka; Richard N Zare
Journal:  Science       Date:  2007-01-05       Impact factor: 47.728

7.  Repeatability of chemical cytometry: 2-DE analysis of single RAW 264.7 macrophage cells.

Authors:  Kimia Sobhani; Susan L Fink; Brad T Cookson; Norman J Dovichi
Journal:  Electrophoresis       Date:  2007-07       Impact factor: 3.535

8.  Specific covalent labeling of recombinant protein molecules inside live cells.

Authors:  B A Griffin; S R Adams; R Y Tsien
Journal:  Science       Date:  1998-07-10       Impact factor: 47.728

9.  A solid-phase enzyme-linked immunospot (ELISPOT) assay for enumeration of specific antibody-secreting cells.

Authors:  C C Czerkinsky; L A Nilsson; H Nygren; O Ouchterlony; A Tarkowski
Journal:  J Immunol Methods       Date:  1983-12-16       Impact factor: 2.303

10.  Lectin binding profiles of SSEA-4 enriched, pluripotent human embryonic stem cell surfaces.

Authors:  Alison Venable; Maisam Mitalipova; Ian Lyons; Karen Jones; Soojung Shin; Michael Pierce; Steven Stice
Journal:  BMC Dev Biol       Date:  2005-07-21       Impact factor: 1.978

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  45 in total

Review 1.  Integrated micro/nanoengineered functional biomaterials for cell mechanics and mechanobiology: a materials perspective.

Authors:  Yue Shao; Jianping Fu
Journal:  Adv Mater       Date:  2013-12-12       Impact factor: 30.849

Review 2.  The applications of single-cell genomics.

Authors:  Michael Lovett
Journal:  Hum Mol Genet       Date:  2013-08-06       Impact factor: 6.150

3.  Machine Learning for Integrating Data in Biology and Medicine: Principles, Practice, and Opportunities.

Authors:  Marinka Zitnik; Francis Nguyen; Bo Wang; Jure Leskovec; Anna Goldenberg; Michael M Hoffman
Journal:  Inf Fusion       Date:  2018-09-21       Impact factor: 12.975

Review 4.  Single-cell technologies sharpen up mammalian stem cell research.

Authors:  Philipp S Hoppe; Daniel L Coutu; Timm Schroeder
Journal:  Nat Cell Biol       Date:  2014-10       Impact factor: 28.824

5.  Label-Free Assay of Protein Tyrosine Phosphatase Activity in Single Cells.

Authors:  Elamar Hakim Moully; Eric J Berns; Milan Mrksich
Journal:  Anal Chem       Date:  2019-09-26       Impact factor: 6.986

6.  Carrier-assisted One-pot Sample Preparation for Targeted Proteomics Analysis of Small Numbers of Human Cells.

Authors:  Kendall Martin; Tong Zhang; Pengfei Zhang; William B Chrisler; Fillmore L Thomas; Fen Liu; Tao Liu; Wei-Jun Qian; Richard D Smith; Tujin Shi
Journal:  J Vis Exp       Date:  2020-11-06       Impact factor: 1.355

7.  Novel large-particle FACS purification of adult ventricular myocytes reveals accumulation of myosin and actin disproportionate to cell size and proteome in normal post-weaning development.

Authors:  Javier E López; Janhavi Sharma; Jorge Avila; Taylor S Wood; Jonathan E VanDyke; Bridget McLaughlin; Craig K Abbey; Andrew Wong; Bat-Erdene Myagmar; Philip M Swigart; Paul C Simpson; Nipavan Chiamvimonvat
Journal:  J Mol Cell Cardiol       Date:  2017-08-02       Impact factor: 5.000

8.  Carrier-Assisted Single-Tube Processing Approach for Targeted Proteomics Analysis of Low Numbers of Mammalian Cells.

Authors:  Pengfei Zhang; Matthew J Gaffrey; Ying Zhu; William B Chrisler; Thomas L Fillmore; Lian Yi; Carrie D Nicora; Tong Zhang; Huanming Wu; Jon Jacobs; Keqi Tang; Jacob Kagan; Sudhir Srivastava; Karin D Rodland; Wei-Jun Qian; Richard D Smith; Tao Liu; H Steven Wiley; Tujin Shi
Journal:  Anal Chem       Date:  2018-12-28       Impact factor: 6.986

9.  Photocleavable DNA barcode-antibody conjugates allow sensitive and multiplexed protein analysis in single cells.

Authors:  Sarit S Agasti; Monty Liong; Vanessa M Peterson; Hakho Lee; Ralph Weissleder
Journal:  J Am Chem Soc       Date:  2012-11-02       Impact factor: 15.419

Review 10.  Single-cell proteomic analysis.

Authors:  Thai Pham; Ankush Tyagi; Yu-Sheng Wang; Jia Guo
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2020-08-03
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