Literature DB >> 22178748

Metal site occupancy and allosteric switching in bacterial metal sensor proteins.

Alfredo J Guerra1, David P Giedroc.   

Abstract

All prokaryotes encode a panel of metal sensor or metalloregulatory proteins that govern the expression of genes that allows an organism to quickly adapt to toxicity or deprivation of both biologically essential transition metal ions, e.g., Zn, Cu, Fe, and heavy metal pollutants. As such, metal sensor proteins can be considered arbiters of intracellular transition metal bioavailability and thus potentially control the metallation state of the metalloproteins in the cell. Metal sensor proteins are specialized allosteric proteins that regulate transcription as a result direct binding of one or two cognate metal ions, to the exclusion of all others. In most cases, the binding of the cognate metal ion induces a structural change in a protein oligomer that either activates or inhibits operator DNA binding. A quantitative measure of the degree to which a particular metal drives metalloregulation of operator DNA-binding is the allosteric coupling free energy, ΔGc. In this review, we summarize recent work directed toward understanding metal occupancy and metal selectivity of these allosteric switches in selected families of metal sensor proteins and examine the structural origins of ΔGc in the functional context a thermodynamic "set-point" model of intracellular metal homeostasis. Copyright Â
© 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 22178748      PMCID: PMC3312040          DOI: 10.1016/j.abb.2011.11.021

Source DB:  PubMed          Journal:  Arch Biochem Biophys        ISSN: 0003-9861            Impact factor:   4.013


  130 in total

1.  Mycobacterium tuberculosis NmtR harbors a nickel sensing site with parallels to Escherichia coli RcnR.

Authors:  Hermes Reyes-Caballero; Chul Won Lee; David P Giedroc
Journal:  Biochemistry       Date:  2011-08-26       Impact factor: 3.162

2.  Plant pathogenic bacteria utilize biofilm growth-associated repressor (BigR), a novel winged-helix redox switch, to control hydrogen sulfide detoxification under hypoxia.

Authors:  Beatriz G Guimarães; Rosicler L Barbosa; Adriana S Soprano; Bruna M Campos; Tiago A de Souza; Celisa C C Tonoli; Adriana F P Leme; Mario T Murakami; Celso E Benedetti
Journal:  J Biol Chem       Date:  2011-06-01       Impact factor: 5.157

3.  Holo-Ni2+ Helicobacter pylori NikR contains four square-planar nickel-binding sites at physiological pH.

Authors:  Stefano Benini; Michele Cianci; Stefano Ciurli
Journal:  Dalton Trans       Date:  2011-07-04       Impact factor: 4.390

Review 4.  The theft of host heme by Gram-positive pathogenic bacteria.

Authors:  Christopher L Nobles; Anthony W Maresso
Journal:  Metallomics       Date:  2011-07-04       Impact factor: 4.526

5.  Nutrient metal sequestration by calprotectin inhibits bacterial superoxide defense, enhancing neutrophil killing of Staphylococcus aureus.

Authors:  Thomas E Kehl-Fie; Seth Chitayat; M Indriati Hood; Steven Damo; Nicole Restrepo; Carlos Garcia; Kim A Munro; Walter J Chazin; Eric P Skaar
Journal:  Cell Host Microbe       Date:  2011-08-18       Impact factor: 21.023

6.  Unnatural amino acid substitution as a probe of the allosteric coupling pathway in a mycobacterial Cu(I) sensor.

Authors:  Zhen Ma; Darin M Cowart; Brian P Ward; Randy J Arnold; Richard D DiMarchi; Limei Zhang; Graham N George; Robert A Scott; David P Giedroc
Journal:  J Am Chem Soc       Date:  2009-12-23       Impact factor: 15.419

7.  Apo and nickel-bound forms of the Pyrococcus horikoshii species of the metalloregulatory protein: NikR characterized by molecular dynamics simulations.

Authors:  Daniel J Sindhikara; Adrian E Roitberg; Kenneth M Merz
Journal:  Biochemistry       Date:  2009-12-22       Impact factor: 3.162

8.  The combined actions of the copper-responsive repressor CsoR and copper-metallochaperone CopZ modulate CopA-mediated copper efflux in the intracellular pathogen Listeria monocytogenes.

Authors:  David Corbett; Stephanie Schuler; Sarah Glenn; Peter W Andrew; Jennifer S Cavet; Ian S Roberts
Journal:  Mol Microbiol       Date:  2011-05-26       Impact factor: 3.501

9.  Identification of altered function alleles that affect Bacillus subtilis PerR metal ion selectivity.

Authors:  Zhen Ma; Jin-Won Lee; John D Helmann
Journal:  Nucleic Acids Res       Date:  2011-03-11       Impact factor: 16.971

10.  Sequential binding and sensing of Zn(II) by Bacillus subtilis Zur.

Authors:  Zhen Ma; Scott E Gabriel; John D Helmann
Journal:  Nucleic Acids Res       Date:  2011-08-05       Impact factor: 16.971

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  27 in total

1.  Allostery and substrate channeling in the tryptophan synthase bienzyme complex: evidence for two subunit conformations and four quaternary states.

Authors:  Dimitri Niks; Eduardo Hilario; Adam Dierkers; Huu Ngo; Dan Borchardt; Thomas J Neubauer; Li Fan; Leonard J Mueller; Michael F Dunn
Journal:  Biochemistry       Date:  2013-09-06       Impact factor: 3.162

2.  Cerium regulates expression of alternative methanol dehydrogenases in Methylosinus trichosporium OB3b.

Authors:  Muhammad Farhan Ul Haque; Bhagyalakshmi Kalidass; Nathan Bandow; Erick A Turpin; Alan A DiSpirito; Jeremy D Semrau
Journal:  Appl Environ Microbiol       Date:  2015-08-21       Impact factor: 4.792

Review 3.  Specificity of metal sensing: iron and manganese homeostasis in Bacillus subtilis.

Authors:  John D Helmann
Journal:  J Biol Chem       Date:  2014-08-26       Impact factor: 5.157

Review 4.  Metallochaperones and metalloregulation in bacteria.

Authors:  Daiana A Capdevila; Katherine A Edmonds; David P Giedroc
Journal:  Essays Biochem       Date:  2017-05-09       Impact factor: 8.000

5.  Solution structure of Mycobacterium tuberculosis NmtR in the apo state: insights into Ni(II)-mediated allostery.

Authors:  Chul Won Lee; Dhruva K Chakravorty; Feng-Ming James Chang; Hermes Reyes-Caballero; Yuzhen Ye; Kenneth M Merz; David P Giedroc
Journal:  Biochemistry       Date:  2012-03-14       Impact factor: 3.162

Review 6.  Allosteric control of metal-responsive transcriptional regulators in bacteria.

Authors:  Karina A Baksh; Deborah B Zamble
Journal:  J Biol Chem       Date:  2019-12-19       Impact factor: 5.157

7.  Allosteric histidine switch for regulation of intracellular zinc(II) fluctuation.

Authors:  Rongfeng Zhu; Yanqun Song; Haiping Liu; Yufei Yang; Shenlin Wang; Chengqi Yi; Peng R Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2017-12-11       Impact factor: 11.205

8.  Glutamate Ligation in the Ni(II)- and Co(II)-Responsive Escherichia coli Transcriptional Regulator, RcnR.

Authors:  Carolyn E Carr; Francesco Musiani; Hsin-Ting Huang; Peter T Chivers; Stefano Ciurli; Michael J Maroney
Journal:  Inorg Chem       Date:  2017-05-18       Impact factor: 5.165

Review 9.  Recent developments in copper and zinc homeostasis in bacterial pathogens.

Authors:  Joseph J Braymer; David P Giedroc
Journal:  Curr Opin Chem Biol       Date:  2014-01-22       Impact factor: 8.822

10.  Energetics of zinc-mediated interactions in the allosteric pathways of metal sensor proteins.

Authors:  Dhruva K Chakravorty; Trent M Parker; Alfredo J Guerra; C David Sherrill; David P Giedroc; Kenneth M Merz
Journal:  J Am Chem Soc       Date:  2012-12-26       Impact factor: 15.419

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