Literature DB >> 22167683

Assignment of backbone resonances in a eukaryotic protein kinase - ERK2 as a representative example.

Andrea Piserchio1, Kevin N Dalby, Ranajeet Ghose.   

Abstract

A first step toward the analysis of the structure, dynamics, and interactions of proteins by NMR is obtaining an acceptable level of resonance assignments. This process is nontrivial in most eukaryotic kinases given their size and suboptimal behavior in solution. Using inactive ERK2 as a representative example, we describe the procedures we utilized to achieve a significant degree of completeness of backbone resonance assignment.

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Year:  2012        PMID: 22167683      PMCID: PMC3305997          DOI: 10.1007/978-1-61779-480-3_19

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  29 in total

Review 1.  Impact of transverse relaxation optimized spectroscopy (TROSY) on NMR as a technique in structural biology.

Authors:  K Pervushin
Journal:  Q Rev Biophys       Date:  2000-05       Impact factor: 5.318

Review 2.  Mitogen-activated protein (MAP) kinase pathways: regulation and physiological functions.

Authors:  G Pearson; F Robinson; T Beers Gibson; B E Xu; M Karandikar; K Berman; M H Cobb
Journal:  Endocr Rev       Date:  2001-04       Impact factor: 19.871

3.  TROSY and CRINEPT: NMR with large molecular and supramolecular structures in solution.

Authors:  R Riek; K Pervushin; K Wüthrich
Journal:  Trends Biochem Sci       Date:  2000-10       Impact factor: 13.807

Review 4.  MAP kinases.

Authors:  Z Chen; T B Gibson; F Robinson; L Silvestro; G Pearson; B Xu; A Wright; C Vanderbilt; M H Cobb
Journal:  Chem Rev       Date:  2001-08       Impact factor: 60.622

5.  Expression and purification of Src-family kinases for solution NMR studies.

Authors:  Andrea Piserchio; David Cowburn; Ranajeet Ghose
Journal:  Methods Mol Biol       Date:  2012

Review 6.  Pharmacological inhibitors of the ERK signaling pathway: application as anticancer drugs.

Authors:  Michiaki Kohno; Jacques Pouyssegur
Journal:  Prog Cell Cycle Res       Date:  2003

Review 7.  ERK and p38 MAPK-activated protein kinases: a family of protein kinases with diverse biological functions.

Authors:  Philippe P Roux; John Blenis
Journal:  Microbiol Mol Biol Rev       Date:  2004-06       Impact factor: 11.056

8.  Expression and nitrogen-15 labeling of proteins for proton and nitrogen-15 nuclear magnetic resonance.

Authors:  D C Muchmore; L P McIntosh; C B Russell; D E Anderson; F W Dahlquist
Journal:  Methods Enzymol       Date:  1989       Impact factor: 1.600

9.  Synthesis of a photoaffinity-spin-labeled derivative of ATP and its first application to F1-ATPase.

Authors:  P Vogel-Claude; G Schäfer; W E Trommer
Journal:  FEBS Lett       Date:  1988-01-25       Impact factor: 4.124

10.  Biosynthetic production of 13C-labeled amino acids with site-specific enrichment.

Authors:  D M LeMaster; J E Cronan
Journal:  J Biol Chem       Date:  1982-02-10       Impact factor: 5.157

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  6 in total

Review 1.  Molecular basis of MAP kinase regulation.

Authors:  Wolfgang Peti; Rebecca Page
Journal:  Protein Sci       Date:  2013-10-19       Impact factor: 6.725

Review 2.  Dynamics-Driven Allostery in Protein Kinases.

Authors:  Alexandr P Kornev; Susan S Taylor
Journal:  Trends Biochem Sci       Date:  2015-10-21       Impact factor: 13.807

3.  Solution NMR insights into docking interactions involving inactive ERK2.

Authors:  Andrea Piserchio; Mangalika Warthaka; Ashwini K Devkota; Tamer S Kaoud; Sunbae Lee; Olga Abramczyk; Pengyu Ren; Kevin N Dalby; Ranajeet Ghose
Journal:  Biochemistry       Date:  2011-04-19       Impact factor: 3.162

4.  Docking interactions of hematopoietic tyrosine phosphatase with MAP kinases ERK2 and p38α.

Authors:  Andrea Piserchio; Dana M Francis; Dorothy Koveal; Kevin N Dalby; Rebecca Page; Wolfgang Peti; Ranajeet Ghose
Journal:  Biochemistry       Date:  2012-10-05       Impact factor: 3.162

5.  Structural and Dynamic Features of F-recruitment Site Driven Substrate Phosphorylation by ERK2.

Authors:  Andrea Piserchio; Venkatesh Ramakrishan; Hsin Wang; Tamer S Kaoud; Boris Arshava; Kaushik Dutta; Kevin N Dalby; Ranajeet Ghose
Journal:  Sci Rep       Date:  2015-06-08       Impact factor: 4.379

6.  Structural and functional characterization of the recombinant death domain from death-associated protein kinase.

Authors:  Evangelos Dioletis; Andrew J Dingley; Paul C Driscoll
Journal:  PLoS One       Date:  2013-07-29       Impact factor: 3.240

  6 in total

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