Literature DB >> 22157814

The tudor domain protein kumo is required to assemble the nuage and to generate germline piRNAs in Drosophila.

Amit Anand1, Toshie Kai.   

Abstract

In Drosophila ovaries, distinct Piwi-interacting RNA (piRNA) pathways defend against transposons in somatic and germline cells. Germline piRNAs predominantly arise from bidirectional clusters and are amplified by the ping-pong cycle. In this study, we characterize a novel Drosophila gene, kumo and show that it encodes a conserved germline piRNA pathway component. Kumo contains five tudor domains and localizes to nuage, a unique structure present in animal germline cells, which is considered to be the processing site for germline piRNAs. Transposons targeted by the germline piRNA pathway are derepressed in kumo mutant females. Moreover, germline piRNA production is significantly reduced in mutant ovaries, thereby indicating that kumo is required to generate germline piRNAs. Kumo localizes to the nuage as well as to nucleus early female germ cells, where it is required to maintain cluster transcript levels. Our data suggest that kumo facilitates germline piRNA production by promoting piRNA cluster transcription in the nucleus and piRNA processing at the nuage.

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Year:  2011        PMID: 22157814      PMCID: PMC3280549          DOI: 10.1038/emboj.2011.449

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  37 in total

1.  zucchini and squash encode two putative nucleases required for rasiRNA production in the Drosophila germline.

Authors:  Attilio Pane; Kristina Wehr; Trudi Schüpbach
Journal:  Dev Cell       Date:  2007-06       Impact factor: 12.270

Review 2.  Small RNAs as guardians of the genome.

Authors:  Colin D Malone; Gregory J Hannon
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

3.  Evidence for a piwi-dependent RNA silencing of the gypsy endogenous retrovirus by the Drosophila melanogaster flamenco gene.

Authors:  Emeline Sarot; Geneviève Payen-Groschêne; Alain Bucheton; Alain Pélisson
Journal:  Genetics       Date:  2004-03       Impact factor: 4.562

4.  Functional involvement of Tudor and dPRMT5 in the piRNA processing pathway in Drosophila germlines.

Authors:  Kazumichi M Nishida; Tomoko N Okada; Takeshi Kawamura; Toutai Mituyama; Yoshinori Kawamura; Sachi Inagaki; Haidong Huang; Dahua Chen; Tatsuhiko Kodama; Haruhiko Siomi; Mikiko C Siomi
Journal:  EMBO J       Date:  2009-12-16       Impact factor: 11.598

5.  Specialized piRNA pathways act in germline and somatic tissues of the Drosophila ovary.

Authors:  Colin D Malone; Julius Brennecke; Monica Dus; Alexander Stark; W Richard McCombie; Ravi Sachidanandam; Gregory J Hannon
Journal:  Cell       Date:  2009-04-23       Impact factor: 41.582

6.  Drosophila maelstrom ensures proper germline stem cell lineage differentiation by repressing microRNA-7.

Authors:  Jun Wei Pek; Ai Khim Lim; Toshie Kai
Journal:  Dev Cell       Date:  2009-09       Impact factor: 12.270

7.  A regulatory circuit for piwi by the large Maf gene traffic jam in Drosophila.

Authors:  Kuniaki Saito; Sachi Inagaki; Toutai Mituyama; Yoshinori Kawamura; Yukiteru Ono; Eri Sakota; Hazuki Kotani; Kiyoshi Asai; Haruhiko Siomi; Mikiko C Siomi
Journal:  Nature       Date:  2009-10-07       Impact factor: 49.962

8.  The Drosophila HP1 homolog Rhino is required for transposon silencing and piRNA production by dual-strand clusters.

Authors:  Carla Klattenhoff; Hualin Xi; Chengjian Li; Soohyun Lee; Jia Xu; Jaspreet S Khurana; Fan Zhang; Nadine Schultz; Birgit S Koppetsch; Anetta Nowosielska; Herve Seitz; Phillip D Zamore; Zhiping Weng; William E Theurkauf
Journal:  Cell       Date:  2009-09-03       Impact factor: 41.582

9.  Arginine methylation of Piwi proteins catalysed by dPRMT5 is required for Ago3 and Aub stability.

Authors:  Yohei Kirino; Namwoo Kim; Mariàngels de Planell-Saguer; Eugene Khandros; Stephanie Chiorean; Peter S Klein; Isidore Rigoutsos; Thomas A Jongens; Zissimos Mourelatos
Journal:  Nat Cell Biol       Date:  2009-04-19       Impact factor: 28.824

10.  Collapse of germline piRNAs in the absence of Argonaute3 reveals somatic piRNAs in flies.

Authors:  Chengjian Li; Vasily V Vagin; Soohyun Lee; Jia Xu; Shengmei Ma; Hualin Xi; Hervé Seitz; Michael D Horwich; Monika Syrzycka; Barry M Honda; Ellen L W Kittler; Maria L Zapp; Carla Klattenhoff; Nadine Schulz; William E Theurkauf; Zhiping Weng; Phillip D Zamore
Journal:  Cell       Date:  2009-04-23       Impact factor: 41.582

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  42 in total

1.  shutdown is a component of the Drosophila piRNA biogenesis machinery.

Authors:  Jonathan B Preall; Benjamin Czech; Paloma M Guzzardo; Felix Muerdter; Gregory J Hannon
Journal:  RNA       Date:  2012-07-02       Impact factor: 4.942

2.  Antisense piRNA amplification, but not piRNA production or nuage assembly, requires the Tudor-domain protein Qin.

Authors:  Zhao Zhang; Birgit S Koppetsch; Jie Wang; Cindy Tipping; Zhiping Weng; William E Theurkauf; Phillip D Zamore
Journal:  EMBO J       Date:  2014-03-18       Impact factor: 11.598

Review 3.  New perspectives on the diversification of the RNA interference system: insights from comparative genomics and small RNA sequencing.

Authors:  Alexander Maxwell Burroughs; Yoshinari Ando; L Aravind
Journal:  Wiley Interdiscip Rev RNA       Date:  2013-12-05       Impact factor: 9.957

Review 4.  The piRNA Pathway Guards the Germline Genome Against Transposable Elements.

Authors:  Katalin Fejes Tóth; Dubravka Pezic; Evelyn Stuwe; Alexandre Webster
Journal:  Adv Exp Med Biol       Date:  2016       Impact factor: 2.622

Review 5.  Biology of PIWI-interacting RNAs: new insights into biogenesis and function inside and outside of germlines.

Authors:  Hirotsugu Ishizu; Haruhiko Siomi; Mikiko C Siomi
Journal:  Genes Dev       Date:  2012-11-01       Impact factor: 11.361

6.  Response to Zhang et al.

Authors:  Amit Anand; Toshie Kai
Journal:  EMBO J       Date:  2014-03-18       Impact factor: 11.598

Review 7.  Protecting and Diversifying the Germline.

Authors:  Ryan J Gleason; Amit Anand; Toshie Kai; Xin Chen
Journal:  Genetics       Date:  2018-02       Impact factor: 4.562

Review 8.  Subcellular Specialization and Organelle Behavior in Germ Cells.

Authors:  Yukiko M Yamashita
Journal:  Genetics       Date:  2018-01       Impact factor: 4.562

9.  C-terminal residues specific to Vasa among DEAD-box helicases are required for its functions in piRNA biogenesis and embryonic patterning.

Authors:  Mehrnoush Dehghani; Paul Lasko
Journal:  Dev Genes Evol       Date:  2016-08-29       Impact factor: 0.900

Review 10.  Untangling the web: the diverse functions of the PIWI/piRNA pathway.

Authors:  Sneha Ramesh Mani; Celina E Juliano
Journal:  Mol Reprod Dev       Date:  2013-06-27       Impact factor: 2.609

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