Literature DB >> 22156839

Systems vaccinology: its promise and challenge for HIV vaccine development.

Helder I Nakaya1, Bali Pulendran.   

Abstract

PURPOSE OF REVIEW: The use of systems biology approaches to understand and predict vaccine-induced immunity promises to revolutionize vaccinology. For centuries vaccines were developed empirically, with very little understanding of the mechanisms by which they mediate protective immunity. The so-called systems vaccinology approach employs high-throughput technologies (e.g. microarrays, RNA-seq and mass spectrometry-based proteomics and metabolomics) and computational modeling to describe the complex interactions between all the parts of immune system, with a view to elucidating new biological rules capable of predicting the behavior of the system. RECENT
FINDINGS: Systems biology successfully applied to yellow-fever and influenza vaccines has led to the discovery of signatures that predict vaccine immunogenicity, and promises to advance basic immunology research by providing novel mechanistic insights about immune regulation. However a major challenge of systems vaccinology concerns the analyses and interpretation of the large and noisy data sets generated by high-throughput techniques. Overcoming these issues, we envision that systems vaccinology will have a potential impact on vaccine development, including HIV vaccines.
SUMMARY: High-throughput technologies allow the investigation of vaccine-induced immune responses at system and molecular levels. These are currently being used to unravel new molecular insights about the immune system, and are on the verge of being integrated into clinical trials to enable rational vaccine design and development.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22156839      PMCID: PMC3253345          DOI: 10.1097/COH.0b013e32834dc37b

Source DB:  PubMed          Journal:  Curr Opin HIV AIDS        ISSN: 1746-630X            Impact factor:   4.283


  82 in total

1.  Classification of microarrays to nearest centroids.

Authors:  Alan R Dabney
Journal:  Bioinformatics       Date:  2005-09-20       Impact factor: 6.937

Review 2.  Signal integration in the endoplasmic reticulum unfolded protein response.

Authors:  David Ron; Peter Walter
Journal:  Nat Rev Mol Cell Biol       Date:  2007-07       Impact factor: 94.444

3.  Predicting stochastic gene expression dynamics in single cells.

Authors:  Jerome T Mettetal; Dale Muzzey; Juan M Pedraza; Ertugrul M Ozbudak; Alexander van Oudenaarden
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-28       Impact factor: 11.205

4.  Gene expression patterns in blood leukocytes discriminate patients with acute infections.

Authors:  Octavio Ramilo; Windy Allman; Wendy Chung; Asuncion Mejias; Monica Ardura; Casey Glaser; Knut M Wittkowski; Bernard Piqueras; Jacques Banchereau; A Karolina Palucka; Damien Chaussabel
Journal:  Blood       Date:  2006-11-14       Impact factor: 22.113

5.  T cell responses are better correlates of vaccine protection in the elderly.

Authors:  Janet E McElhaney; Dongxu Xie; W David Hager; Mary Beth Barry; Yazhen Wang; Alison Kleppinger; Catherine Ewen; Kevin P Kane; R Chris Bleackley
Journal:  J Immunol       Date:  2006-05-15       Impact factor: 5.422

6.  Regulation of osteoclast differentiation and function by the CaMK-CREB pathway.

Authors:  Kojiro Sato; Ayako Suematsu; Tomoki Nakashima; Sayaka Takemoto-Kimura; Kazuhiro Aoki; Yasuyuki Morishita; Hiroshi Asahara; Keiichi Ohya; Akira Yamaguchi; Toshiyuki Takai; Tatsuhiko Kodama; Talal A Chatila; Haruhiko Bito; Hiroshi Takayanagi
Journal:  Nat Med       Date:  2006-11-26       Impact factor: 53.440

7.  Gene expression profiling in breast cancer: understanding the molecular basis of histologic grade to improve prognosis.

Authors:  Christos Sotiriou; Pratyaksha Wirapati; Sherene Loi; Adrian Harris; Steve Fox; Johanna Smeds; Hans Nordgren; Pierre Farmer; Viviane Praz; Benjamin Haibe-Kains; Christine Desmedt; Denis Larsimont; Fatima Cardoso; Hans Peterse; Dimitry Nuyten; Marc Buyse; Marc J Van de Vijver; Jonas Bergh; Martine Piccart; Mauro Delorenzi
Journal:  J Natl Cancer Inst       Date:  2006-02-15       Impact factor: 13.506

8.  Large-scale optimization-based classification models in medicine and biology.

Authors:  Eva K Lee
Journal:  Ann Biomed Eng       Date:  2007-05-15       Impact factor: 3.934

Review 9.  Systems biology, metabolic modelling and metabolomics in drug discovery and development.

Authors:  Douglas B Kell
Journal:  Drug Discov Today       Date:  2006-10-19       Impact factor: 7.851

10.  Gene selection and classification of microarray data using random forest.

Authors:  Ramón Díaz-Uriarte; Sara Alvarez de Andrés
Journal:  BMC Bioinformatics       Date:  2006-01-06       Impact factor: 3.169

View more
  31 in total

Review 1.  Effect of vaccine administration modality on immunogenicity and efficacy.

Authors:  Lu Zhang; Wei Wang; Shixia Wang
Journal:  Expert Rev Vaccines       Date:  2015-08-27       Impact factor: 5.217

Review 2.  Systems immunology of human malaria.

Authors:  Tuan M Tran; Babru Samal; Ewen Kirkness; Peter D Crompton
Journal:  Trends Parasitol       Date:  2012-05-15

3.  Antigen expression determines adenoviral vaccine potency independent of IFN and STING signaling.

Authors:  Kylie M Quinn; Daniel E Zak; Andreia Costa; Ayako Yamamoto; Kathrin Kastenmuller; Brenna J Hill; Geoffrey M Lynn; Patricia A Darrah; Ross W B Lindsay; Lingshu Wang; Cheng Cheng; Alfredo Nicosia; Antonella Folgori; Stefano Colloca; Riccardo Cortese; Emma Gostick; David A Price; Jason G D Gall; Mario Roederer; Alan Aderem; Robert A Seder
Journal:  J Clin Invest       Date:  2015-02-02       Impact factor: 14.808

Review 4.  Vaccinology in the era of high-throughput biology.

Authors:  Helder I Nakaya; Bali Pulendran
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-06-19       Impact factor: 6.237

Review 5.  Can we just kick-and-kill HIV: possible challenges posed by the epigenetically controlled interplay between HIV and host immunity.

Authors:  Marta Ruiz-Riol; Christian Brander
Journal:  Immunotherapy       Date:  2019-06-20       Impact factor: 4.196

6.  Innate gene signature distinguishes humoral versus cytotoxic responses to influenza vaccination.

Authors:  Eléna Gonçalves; Olivia Bonduelle; Angèle Soria; Pierre Loulergue; Alexandra Rousseau; Marine Cachanado; Henri Bonnabau; Rodolphe Thiebaut; Nicolas Tchitchek; Sylvie Behillil; Sylvie van der Werf; Annika Vogt; Tabassome Simon; Odile Launay; Behazine Combadière
Journal:  J Clin Invest       Date:  2019-03-07       Impact factor: 14.808

Review 7.  What does it mean to develop an HIV vaccine by rational design?

Authors:  Marc H V van Regenmortel
Journal:  Arch Virol       Date:  2020-11-29       Impact factor: 2.574

Review 8.  Recent progress in mucosal vaccine development: potential and limitations.

Authors:  Nils Lycke
Journal:  Nat Rev Immunol       Date:  2012-07-25       Impact factor: 53.106

Review 9.  Systems biological approaches to measure and understand vaccine immunity in humans.

Authors:  Shuzhao Li; Helder I Nakaya; Dmitri A Kazmin; Jason Z Oh; Bali Pulendran
Journal:  Semin Immunol       Date:  2013-06-21       Impact factor: 11.130

10.  Induction of Heterologous Tier 2 HIV-1-Neutralizing and Cross-Reactive V1/V2-Specific Antibodies in Rabbits by Prime-Boost Immunization.

Authors:  Samantha Townsley; Zeinab Mohamed; Wenjin Guo; Jennifer McKenna; Brad Cleveland; Celia LaBranche; David Beaumont; Xiaoying Shen; Nicole L Yates; Abraham Pinter; Georgia D Tomaras; Guido Ferrari; David C Montefiori; Shiu-Lok Hu
Journal:  J Virol       Date:  2016-09-12       Impact factor: 5.103

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.