Literature DB >> 18573089

Single-molecule approach to molecular biology in living bacterial cells.

X Sunney Xie1, Paul J Choi, Gene-Wei Li, Nam Ki Lee, Giuseppe Lia.   

Abstract

Recent developments on fluorescent proteins and microscopy techniques have allowed the probing of single molecules in a living bacterial cell with high specificity, millisecond time resolution, and nanometer spatial precision. Recording movies and analyzing dynamics of individual macromolecules have brought new insights into the mechanisms of many processes in molecular biology, such as DNA-protein interactions, gene regulation, transcription, translation, and replication, among others. Here we review the key methods of single-molecule detection and highlight numerous examples to illustrate how these experiments are contributing to the quantitative understanding of the fundamental processes in a living cell.

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Year:  2008        PMID: 18573089     DOI: 10.1146/annurev.biophys.37.092607.174640

Source DB:  PubMed          Journal:  Annu Rev Biophys        ISSN: 1936-122X            Impact factor:   12.981


  116 in total

1.  Three-dimensional tracking of single mRNA particles in Saccharomyces cerevisiae using a double-helix point spread function.

Authors:  Michael A Thompson; Jason M Casolari; Majid Badieirostami; Patrick O Brown; W E Moerner
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-04       Impact factor: 11.205

2.  Complex binding of the FabR repressor of bacterial unsaturated fatty acid biosynthesis to its cognate promoters.

Authors:  Youjun Feng; John E Cronan
Journal:  Mol Microbiol       Date:  2011-02-21       Impact factor: 3.501

3.  Analysis of kinetic intermediates in single-particle dwell-time distributions.

Authors:  Daniel L Floyd; Stephen C Harrison; Antoine M van Oijen
Journal:  Biophys J       Date:  2010-07-21       Impact factor: 4.033

Review 4.  Protein subcellular localization in bacteria.

Authors:  David Z Rudner; Richard Losick
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-03-03       Impact factor: 10.005

Review 5.  Single-molecule and superresolution imaging in live bacteria cells.

Authors:  Julie S Biteen; W E Moerner
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-03       Impact factor: 10.005

6.  Using a single fluorescent reporter gene to infer half-life of extrinsic noise and other parameters of gene expression.

Authors:  Michał Komorowski; Bärbel Finkenstädt; David Rand
Journal:  Biophys J       Date:  2010-06-16       Impact factor: 4.033

Review 7.  Cellular strategies for regulating DNA supercoiling: a single-molecule perspective.

Authors:  Daniel A Koster; Aurélien Crut; Stewart Shuman; Mary-Ann Bjornsti; Nynke H Dekker
Journal:  Cell       Date:  2010-08-20       Impact factor: 41.582

8.  Quantitative Analysis of Intracellular Fluorescent Foci in Live Bacteria.

Authors:  M Charl Moolman; Jacob W J Kerssemakers; Nynke H Dekker
Journal:  Biophys J       Date:  2015-09-01       Impact factor: 4.033

9.  Toward single-molecule optical mapping of the epigenome.

Authors:  Michal Levy-Sakin; Assaf Grunwald; Soohong Kim; Natalie R Gassman; Anna Gottfried; Josh Antelman; Younggyu Kim; Sam O Ho; Robin Samuel; Xavier Michalet; Ron R Lin; Thomas Dertinger; Andrew S Kim; Sangyoon Chung; Ryan A Colyer; Elmar Weinhold; Shimon Weiss; Yuval Ebenstein
Journal:  ACS Nano       Date:  2013-12-20       Impact factor: 15.881

Review 10.  Single molecule techniques in DNA repair: a primer.

Authors:  Craig D Hughes; Michelle Simons; Cassidy E Mackenzie; Bennett Van Houten; Neil M Kad
Journal:  DNA Repair (Amst)       Date:  2014-05-10
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