Literature DB >> 22139161

Crystallization and preliminary crystallographic analysis of dextranase from Streptococcus mutans.

Nobuhiro Suzuki1, Young Min Kim, Zui Fujimoto, Mitsuru Momma, Hee Kwon Kang, Kazumi Funane, Masayuki Okuyama, Haruhide Mori, Atsuo Kimura.   

Abstract

Streptococcus mutans dextranase hydrolyzes the internal α-1,6-linkages of dextran and belongs to glycoside hydrolase family 66. An N- and C-terminal deletion mutant of S. mutans dextranase was crystallized by the sitting-drop vapour-diffusion method. The crystals diffracted to a resolution of 1.6 Å and belonged to space group P2(1), with unit-cell parameters a = 53.2, b = 89.7, c = 63.3 Å, β = 102.3°. Assuming that the asymmetric unit of the crystal contained one molecule, the Matthews coefficient was calculated to be 4.07 Å(3) Da(-1); assuming the presence of two molecules in the asymmetric unit it was calculated to be 2.03 Å(3) Da(-1).

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Year:  2011        PMID: 22139161      PMCID: PMC3232134          DOI: 10.1107/S1744309111038425

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  26 in total

1.  Analysis of a dextran-binding domain of the dextranase of Streptococcus mutans.

Authors:  H Morisaki; T Igarashi; A Yamamoto; N Goto
Journal:  Lett Appl Microbiol       Date:  2002       Impact factor: 2.858

2.  An essential amino acid residue for catalytic activity of the dextranase of Streptococcus mutans.

Authors:  T Igarashi; H Morisaki; A Yamamoto; N Goto
Journal:  Oral Microbiol Immunol       Date:  2002-06

3.  Crystal structure of Bacillus stearothermophilus alpha-amylase: possible factors determining the thermostability.

Authors:  D Suvd; Z Fujimoto; K Takase; M Matsumura; H Mizuno
Journal:  J Biochem       Date:  2001-03       Impact factor: 3.387

4.  Identification of catalytic amino acids of cyclodextran glucanotransferase from Bacillus circulans T-3040.

Authors:  Tomoko Yamamoto; Kazue Terasawa; Young-Min Kim; Atsuo Kimura; Yoshiaki Kitamura; Mikihiko Kobayashi; Kazumi Funane
Journal:  Biosci Biotechnol Biochem       Date:  2006-08       Impact factor: 2.043

Review 5.  Microbial dextran-hydrolyzing enzymes: fundamentals and applications.

Authors:  Elvira Khalikova; Petri Susi; Timo Korpela
Journal:  Microbiol Mol Biol Rev       Date:  2005-06       Impact factor: 11.056

6.  Iterative database searches demonstrate that glycoside hydrolase families 27, 31, 36 and 66 share a common evolutionary origin with family 13.

Authors:  Daniel J Rigden
Journal:  FEBS Lett       Date:  2002-07-17       Impact factor: 4.124

7.  Dextranase from Penicillium minioluteum: reaction course, crystal structure, and product complex.

Authors:  Anna M Larsson; Rolf Andersson; Jerry Ståhlberg; Lennart Kenne; T Alwyn Jones
Journal:  Structure       Date:  2003-09       Impact factor: 5.006

8.  Crystallization and preliminary X-ray analysis of alpha-xylosidase from Escherichia coli.

Authors:  Momoyo Kitamura; Toyoyuki Ose; Masayuki Okuyama; Hiromi Watanabe; Min Yao; Haruhide Mori; Atsuo Kimura; Isao Tanaka
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-01-08

9.  Crystal structure of rice alpha-galactosidase complexed with D-galactose.

Authors:  Zui Fujimoto; Satoshi Kaneko; Mitsuru Momma; Hideyuki Kobayashi; Hiroshi Mizuno
Journal:  J Biol Chem       Date:  2003-03-25       Impact factor: 5.157

10.  Molecular characterization of dextranase from Streptococcus rattus.

Authors:  Takeshi Igarashi; Hirobumi Morisaki; Nobuichi Goto
Journal:  Microbiol Immunol       Date:  2004       Impact factor: 1.955

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  3 in total

1.  Crystallization and preliminary X-ray crystallographic analysis of cycloisomaltooligosaccharide glucanotransferase from Bacillus circulans T-3040.

Authors:  Nobuhiro Suzuki; Young Min Kim; Mitsuru Momma; Zui Fujimoto; Mikihiko Kobayashi; Atsuo Kimura; Kazumi Funane
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-07-27

2.  Novel dextranase catalyzing cycloisomaltooligosaccharide formation and identification of catalytic amino acids and their functions using chemical rescue approach.

Authors:  Young-Min Kim; Yoshiaki Kiso; Tomoe Muraki; Min-Sun Kang; Hiroyuki Nakai; Wataru Saburi; Weeranuch Lang; Hee-Kwon Kang; Masayuki Okuyama; Haruhide Mori; Ryuichiro Suzuki; Kazumi Funane; Nobuhiro Suzuki; Mitsuru Momma; Zui Fujimoto; Tetsuya Oguma; Mikihiko Kobayashi; Doman Kim; Atsuo Kimura
Journal:  J Biol Chem       Date:  2012-03-29       Impact factor: 5.157

3.  Structural elucidation of dextran degradation mechanism by streptococcus mutans dextranase belonging to glycoside hydrolase family 66.

Authors:  Nobuhiro Suzuki; Young-Min Kim; Zui Fujimoto; Mitsuru Momma; Masayuki Okuyama; Haruhide Mori; Kazumi Funane; Atsuo Kimura
Journal:  J Biol Chem       Date:  2012-02-15       Impact factor: 5.157

  3 in total

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