Literature DB >> 16510986

Crystallization and preliminary X-ray analysis of alpha-xylosidase from Escherichia coli.

Momoyo Kitamura1, Toyoyuki Ose, Masayuki Okuyama, Hiromi Watanabe, Min Yao, Haruhide Mori, Atsuo Kimura, Isao Tanaka.   

Abstract

Glycoside hydrolases have been implicated in many biological processes. To date, they have been classified into 93 glycoside hydrolase (GH) families based on amino-acid sequence similarity. alpha-Xylosidase from Escherichia coli belongs to GH family 31 and catalyzes the release of alpha-xylose from the non-reducing terminal side of alpha-xyloside. Single crystals of alpha-xylosidase have been grown by vapour diffusion at 293 K from 10%(w/v) PEG 20K, 2%(v/v) 2-propanol, 2%(v/v) glycerol and 0.1 M 2-morpholinoethanesulfonic acid pH 5.5. These crystals belong to space group P2(1)2(1)2(1) and X-ray diffraction data were collected to a resolution of 2.75 A. Crystals of selenomethionyl-substituted alpha-xylosidase were also obtained, which diffracted to at least 3.0 A. Based on the value of VM, the asymmetric unit in these crystals was assumed to contain six molecules.

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Year:  2005        PMID: 16510986      PMCID: PMC1952256          DOI: 10.1107/S1744309104033202

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  9 in total

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Authors:  B Henrissat
Journal:  Biochem J       Date:  1991-12-01       Impact factor: 3.857

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Authors:  B Henrissat; A Bairoch
Journal:  Biochem J       Date:  1996-06-01       Impact factor: 3.857

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Authors:  Z Otwinowski; W Minor
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

4.  Identification and molecular characterization of the first alpha -xylosidase from an archaeon.

Authors:  M Moracci; B Cobucci Ponzano; A Trincone; S Fusco; M De Rosa; J van Der Oost; C W Sensen; R L Charlebois; M Rossi
Journal:  J Biol Chem       Date:  2000-07-21       Impact factor: 5.157

5.  Cloning and expression pattern of a gene encoding an alpha-xylosidase active against xyloglucan oligosaccharides from Arabidopsis.

Authors:  J Sampedro; C Sieiro; G Revilla; T González-Villa; I Zarra
Journal:  Plant Physiol       Date:  2001-06       Impact factor: 8.340

6.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

7.  New families in the classification of glycosyl hydrolases based on amino acid sequence similarities.

Authors:  B Henrissat; A Bairoch
Journal:  Biochem J       Date:  1993-08-01       Impact factor: 3.857

8.  Molecular characterisation of a xyloglucan oligosaccharide-acting alpha-D-xylosidase from nasturtium (Tropaeolum majus L.) cotyledons that resembles plant 'apoplastic' alpha-D-glucosidases.

Authors:  Hazel J Crombie; Sumant Chengappa; Carl Jarman; Chris Sidebottom; J S Grant Reid
Journal:  Planta       Date:  2002-01       Impact factor: 4.116

9.  Overexpression and characterization of two unknown proteins, YicI and YihQ, originated from Escherichia coli.

Authors:  Masayuki Okuyama; Haruhide Mori; Seiya Chiba; Atsuo Kimura
Journal:  Protein Expr Purif       Date:  2004-09       Impact factor: 1.650

  9 in total
  2 in total

1.  Crystallization and preliminary crystallographic analysis of dextranase from Streptococcus mutans.

Authors:  Nobuhiro Suzuki; Young Min Kim; Zui Fujimoto; Mitsuru Momma; Hee Kwon Kang; Kazumi Funane; Masayuki Okuyama; Haruhide Mori; Atsuo Kimura
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-11-25

2.  Structural elucidation of dextran degradation mechanism by streptococcus mutans dextranase belonging to glycoside hydrolase family 66.

Authors:  Nobuhiro Suzuki; Young-Min Kim; Zui Fujimoto; Mitsuru Momma; Masayuki Okuyama; Haruhide Mori; Kazumi Funane; Atsuo Kimura
Journal:  J Biol Chem       Date:  2012-02-15       Impact factor: 5.157

  2 in total

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