Literature DB >> 22134548

A new proofreading mechanism for lesion bypass by DNA polymerase-λ.

Emmanuele Crespan1, Giovanni Maga, Ulrich Hübscher.   

Abstract

Replicative DNA polymerases (DNA pols) increase their fidelity by removing misincorporated nucleotides with their 3' → 5' exonuclease activity. Exonuclease activity reduces translesion synthesis (TLS) efficiency and TLS DNA pols lack 3' → 5' exonuclease activity. Here we show that physiological concentrations of pyrophosphate (PP(i)) activate the pyrophosphorolytic activity by DNA pol-λ, allowing the preferential excision of the incorrectly incorporated A opposite a 7,8-dihydro-8-oxoguanine lesion, or T opposite a 6-methyl-guanine, with respect to the correct C. This is the first example of an alternative proofreading mechanism used during TLS.

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Year:  2011        PMID: 22134548      PMCID: PMC3246252          DOI: 10.1038/embor.2011.226

Source DB:  PubMed          Journal:  EMBO Rep        ISSN: 1469-221X            Impact factor:   8.807


  28 in total

1.  A closed conformation for the Pol lambda catalytic cycle.

Authors:  Miguel Garcia-Diaz; Katarzyna Bebenek; Joseph M Krahn; Thomas A Kunkel; Lars C Pedersen
Journal:  Nat Struct Mol Biol       Date:  2004-12-19       Impact factor: 15.369

Review 2.  Structure-function studies of DNA polymerase lambda.

Authors:  Miguel Garcia-Diaz; Katarzyna Bebenek; Guanghua Gao; Lars C Pedersen; Robert E London; Thomas A Kunkel
Journal:  DNA Repair (Amst)       Date:  2005-10-04

Review 3.  Structure and mechanism of DNA polymerase Beta.

Authors:  William A Beard; Samuel H Wilson
Journal:  Chem Rev       Date:  2006-02       Impact factor: 60.622

Review 4.  Fidelity mechanisms in DNA replication.

Authors:  H Echols; M F Goodman
Journal:  Annu Rev Biochem       Date:  1991       Impact factor: 23.643

5.  DNA polymerase beta: pre-steady-state kinetic analysis and roles of arginine-283 in catalysis and fidelity.

Authors:  B G Werneburg; J Ahn; X Zhong; R J Hondal; V S Kraynov; M D Tsai
Journal:  Biochemistry       Date:  1996-06-04       Impact factor: 3.162

Review 6.  Eukaryotic translesion synthesis DNA polymerases: specificity of structure and function.

Authors:  Satya Prakash; Robert E Johnson; Louise Prakash
Journal:  Annu Rev Biochem       Date:  2005       Impact factor: 23.643

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Authors:  P Lecomte; O P Doubleday; M Radman
Journal:  J Mol Biol       Date:  1986-06-20       Impact factor: 5.469

8.  Fidelity of Dpo4: effect of metal ions, nucleotide selection and pyrophosphorolysis.

Authors:  Alexandra Vaisman; Hong Ling; Roger Woodgate; Wei Yang
Journal:  EMBO J       Date:  2005-08-18       Impact factor: 11.598

9.  Luminescent immobilized enzyme test systems for inorganic pyrophosphate: assays using firefly luciferase and nicotinamide-mononucleotide adenylyl transferase or adenosine-5'-triphosphate sulfurylase.

Authors:  B A Barshop; D T Adamson; D C Vellom; F Rosen; B L Epstein; J E Seegmiller
Journal:  Anal Biochem       Date:  1991-08-15       Impact factor: 3.365

10.  Hepatic accumulation of pyrophosphate during acetate metabolism.

Authors:  T Yamada; T Inoue; T Nishida; E Furuya; K Tagawa
Journal:  J Biochem       Date:  1988-11       Impact factor: 3.387

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  8 in total

1.  Requirement for transient metal ions revealed through computational analysis for DNA polymerase going in reverse.

Authors:  Lalith Perera; Bret D Freudenthal; William A Beard; David D Shock; Lee G Pedersen; Samuel H Wilson
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-08       Impact factor: 11.205

Review 2.  Translesion DNA synthesis and mutagenesis in eukaryotes.

Authors:  Julian E Sale
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-03-01       Impact factor: 10.005

3.  A fidelity mechanism in DNA polymerase lambda promotes error-free bypass of 8-oxo-dG.

Authors:  Matthew J Burak; Kip E Guja; Elena Hambardjieva; Burak Derkunt; Miguel Garcia-Diaz
Journal:  EMBO J       Date:  2016-08-01       Impact factor: 11.598

4.  Observing a DNA polymerase choose right from wrong.

Authors:  Bret D Freudenthal; William A Beard; David D Shock; Samuel H Wilson
Journal:  Cell       Date:  2013-07-03       Impact factor: 41.582

5.  A switch between DNA polymerases δ and λ promotes error-free bypass of 8-oxo-G lesions.

Authors:  Enni Markkanen; Benoît Castrec; Giuseppe Villani; Ulrich Hübscher
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-21       Impact factor: 11.205

6.  Impact of ribonucleotide incorporation by DNA polymerases β and λ on oxidative base excision repair.

Authors:  Emmanuele Crespan; Antonia Furrer; Marcel Rösinger; Federica Bertoletti; Elisa Mentegari; Giulia Chiapparini; Ralph Imhof; Nathalie Ziegler; Shana J Sturla; Ulrich Hübscher; Barbara van Loon; Giovanni Maga
Journal:  Nat Commun       Date:  2016-02-26       Impact factor: 14.919

7.  Modulating the DNA polymerase β reaction equilibrium to dissect the reverse reaction.

Authors:  David D Shock; Bret D Freudenthal; William A Beard; Samuel H Wilson
Journal:  Nat Chem Biol       Date:  2017-07-31       Impact factor: 15.040

8.  Human PrimPol Discrimination against Dideoxynucleotides during Primer Synthesis.

Authors:  Gustavo Carvalho; Alberto Díaz-Talavera; Patricia A Calvo; Luis Blanco; María I Martínez-Jiménez
Journal:  Genes (Basel)       Date:  2021-09-24       Impact factor: 4.096

  8 in total

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