Literature DB >> 15608652

A closed conformation for the Pol lambda catalytic cycle.

Miguel Garcia-Diaz1, Katarzyna Bebenek, Joseph M Krahn, Thomas A Kunkel, Lars C Pedersen.   

Abstract

Pol lambda is a family X member believed to fill short gaps during DNA repair. Here we report crystal structures of Pol lambda representing three steps in filling a single-nucleotide gap. These structures indicate that, unlike other DNA polymerases, Pol lambda does not undergo large subdomain movements during catalysis, and they provide a clear characterization of the geometry and stereochemistry of the in-line nucleotidyl transfer reaction.

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Year:  2004        PMID: 15608652     DOI: 10.1038/nsmb876

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  85 in total

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Review 4.  The X family portrait: structural insights into biological functions of X family polymerases.

Authors:  Andrea F Moon; Miguel Garcia-Diaz; Vinod K Batra; William A Beard; Katarzyna Bebenek; Thomas A Kunkel; Samuel H Wilson; Lars C Pedersen
Journal:  DNA Repair (Amst)       Date:  2007-07-12

5.  The family X DNA polymerase from Deinococcus radiodurans adopts a non-standard extended conformation.

Authors:  Nicolas Leulliot; Lionel Cladière; François Lecointe; Dominique Durand; Ulrich Hübscher; Herman van Tilbeurgh
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6.  Catalytic mechanism of human DNA polymerase lambda with Mg2+ and Mn2+ from ab initio quantum mechanical/molecular mechanical studies.

Authors:  G Andrés Cisneros; Lalith Perera; Miguel García-Díaz; Katarzyna Bebenek; Thomas A Kunkel; Lee G Pedersen
Journal:  DNA Repair (Amst)       Date:  2008-08-30

7.  Insights into the replisome from the structure of a ternary complex of the DNA polymerase III alpha-subunit.

Authors:  Richard A Wing; Scott Bailey; Thomas A Steitz
Journal:  J Mol Biol       Date:  2008-07-27       Impact factor: 5.469

8.  Activity and fidelity of human DNA polymerase α depend on primer structure.

Authors:  Andrey G Baranovskiy; Vincent N Duong; Nigar D Babayeva; Yinbo Zhang; Youri I Pavlov; Karen S Anderson; Tahir H Tahirov
Journal:  J Biol Chem       Date:  2018-03-19       Impact factor: 5.157

9.  Role of the catalytic metal during polymerization by DNA polymerase lambda.

Authors:  Miguel Garcia-Diaz; Katarzyna Bebenek; Joseph M Krahn; Lars C Pedersen; Thomas A Kunkel
Journal:  DNA Repair (Amst)       Date:  2007-05-01

10.  A novel mechanism of sugar selection utilized by a human X-family DNA polymerase.

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Journal:  J Mol Biol       Date:  2009-11-06       Impact factor: 5.469

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