Literature DB >> 22125758

Engineering of biocatalysts - from evolution to creation.

Maureen B Quin1, Claudia Schmidt-Dannert.   

Abstract

Enzymes are increasingly being used in an industrial setting as a cheap and environmentally-friendly alternative to chemical catalysts. In order to produce the ideal biocatalyst, natural enzymes often require optimization to increase their catalytic efficiencies and specificities under a particular range of reaction conditions. A number of enzyme engineering strategies are currently employed to modify biocatalysts, improving their suitability for large-scale industrial applications. These include various directed evolution techniques, semi-rational design techniques, and more recently, the de novo design of novel enzymes. Advances in mutant library design, high-throughput selection processes, and the introduction of powerful computer algorithms have all contributed to the current exponential growth of the field of enzyme engineering. This review article aims to present some of the currently employed strategies for enzyme engineering and attempts to highlight the most recent advances in methodology.

Entities:  

Year:  2011        PMID: 22125758      PMCID: PMC3224019          DOI: 10.1021/cs200217t

Source DB:  PubMed          Journal:  ACS Catal            Impact factor:   13.084


  39 in total

1.  Native protein sequences are close to optimal for their structures.

Authors:  B Kuhlman; D Baker
Journal:  Proc Natl Acad Sci U S A       Date:  2000-09-12       Impact factor: 11.205

2.  Computational design of an enzyme catalyst for a stereoselective bimolecular Diels-Alder reaction.

Authors:  Justin B Siegel; Alexandre Zanghellini; Helena M Lovick; Gert Kiss; Abigail R Lambert; Jennifer L St Clair; Jasmine L Gallaher; Donald Hilvert; Michael H Gelb; Barry L Stoddard; Kendall N Houk; Forrest E Michael; David Baker
Journal:  Science       Date:  2010-07-16       Impact factor: 47.728

Review 3.  Synthetic biology for synthetic chemistry.

Authors:  Jay D Keasling
Journal:  ACS Chem Biol       Date:  2008-01-18       Impact factor: 5.100

4.  Molecular evolution of a defined DNA sequence with accumulation of mutations in a single round by a dual approach to random chemical mutagenesis (DuARCheM).

Authors:  Utpal Mohan; Uttam Chand Banerjee
Journal:  Chembiochem       Date:  2008-09-22       Impact factor: 3.164

Review 5.  Random mutagenesis methods for in vitro directed enzyme evolution.

Authors:  Nikolaos E Labrou
Journal:  Curr Protein Pept Sci       Date:  2010-02       Impact factor: 3.272

6.  Directed evolution of an esterase for the stereoselective resolution of a key intermediate in the synthesis of epothilones.

Authors:  U T Bornscheuer; J Altenbuchner; H H Meyer
Journal:  Biotechnol Bioeng       Date:  1998-06-05       Impact factor: 4.530

7.  Artificial di-iron proteins: solution characterization of four helix bundles containing two distinct types of inter-helical loops.

Authors:  Ornella Maglio; Flavia Nastri; Jennifer R Calhoun; Stephen Lahr; Herschel Wade; Vincenzo Pavone; William F DeGrado; Angela Lombardi
Journal:  J Biol Inorg Chem       Date:  2005-09-23       Impact factor: 3.358

Review 8.  Beyond directed evolution--semi-rational protein engineering and design.

Authors:  Stefan Lutz
Journal:  Curr Opin Biotechnol       Date:  2010-09-24       Impact factor: 9.740

Review 9.  Status of protein engineering for biocatalysts: how to design an industrially useful biocatalyst.

Authors:  Andreas S Bommarius; Janna K Blum; Michael J Abrahamson
Journal:  Curr Opin Chem Biol       Date:  2010-11-27       Impact factor: 8.822

10.  Selection and evolution of enzymes from a partially randomized non-catalytic scaffold.

Authors:  Burckhard Seelig; Jack W Szostak
Journal:  Nature       Date:  2007-08-16       Impact factor: 49.962

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  10 in total

1.  Bio-production of Baccatin III, an Important Precursor of Paclitaxel by a Cost-Effective Approach.

Authors:  Shu-Ling Lin; Tao Wei; Jun-Fang Lin; Li-Qiong Guo; Guang-Pei Wu; Jun-Bin Wei; Jia-Jun Huang; Ping-Lan Ouyang
Journal:  Mol Biotechnol       Date:  2018-07       Impact factor: 2.695

2.  A Two-Metal-Ion-Mediated Conformational Switching Pathway for HDV Ribozyme Activation.

Authors:  Tai-Sung Lee; Brian K Radak; Michael E Harris; Darrin M York
Journal:  ACS Catal       Date:  2016-02-01       Impact factor: 13.084

Review 3.  Cell-free metabolic engineering: biomanufacturing beyond the cell.

Authors:  Quentin M Dudley; Ashty S Karim; Michael C Jewett
Journal:  Biotechnol J       Date:  2014-10-15       Impact factor: 4.677

4.  US132 Cyclodextrin Glucanotransferase Engineering by Random Mutagenesis for an Anti-Staling Purpose.

Authors:  Sonia Jemli; Mouna Jaoua; Samir Bejar
Journal:  Mol Biotechnol       Date:  2016-09       Impact factor: 2.695

5.  Characterization, crystallization and preliminary X-ray diffraction analysis of an (S)-specific esterase (pfEstA) from Pseudomonas fluorescens KCTC 1767: enantioselectivity for potential industrial applications.

Authors:  Seulgi Kim; Tri Duc Ngo; Kyeong Kyu Kim; T Doohun Kim
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-10-30

Review 6.  Protein design for pathway engineering.

Authors:  Dawn T Eriksen; Jiazhang Lian; Huimin Zhao
Journal:  J Struct Biol       Date:  2013-04-01       Impact factor: 2.867

7.  Engineering the Enantioselectivity and Thermostability of a (+)-γ-Lactamase from Microbacterium hydrocarbonoxydans for Kinetic Resolution of Vince Lactam (2-Azabicyclo[2.2.1]hept-5-en-3-one).

Authors:  Shuaihua Gao; Shaozhou Zhu; Rong Huang; Hongxia Li; Hao Wang; Guojun Zheng
Journal:  Appl Environ Microbiol       Date:  2017-12-15       Impact factor: 4.792

8.  Engineering of the Bacillus circulans β-Galactosidase Product Specificity.

Authors:  Huifang Yin; Tjaard Pijning; Xiangfeng Meng; Lubbert Dijkhuizen; Sander S van Leeuwen
Journal:  Biochemistry       Date:  2017-01-25       Impact factor: 3.162

9.  In vivo evolution of metabolic pathways: Assembling old parts to build novel and functional structures.

Authors:  Alejandro Luque; Sarra C Sebai; Vincent Sauveplane; Odile Ramaen; Rudy Pandjaitan
Journal:  Bioengineered       Date:  2014-10-30       Impact factor: 3.269

10.  Genome mining of 2-phenylethanol biosynthetic genes from Enterobacter sp. CGMCC 5087 and heterologous overproduction in Escherichia coli.

Authors:  Changqing Liu; Kai Zhang; Wenyan Cao; Ge Zhang; Guoqiang Chen; Haiyan Yang; Qian Wang; Haobao Liu; Mo Xian; Haibo Zhang
Journal:  Biotechnol Biofuels       Date:  2018-11-08       Impact factor: 6.040

  10 in total

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