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Literature DB >> 22123766

Genome sequence of Sphingomonas elodea ATCC 31461, a highly productive industrial strain of gellan gum.

Zhonghui Gai¹, Xia Wang, Xiaoyun Zhang, Fei Su, Xiaoyu Wang, Hongzhi Tang, Cui Tai, Fei Tao, Cuiqing Ma, Ping Xu.

Abstract

The commercial gelling agent gellan gum is a heteropolysaccharide produced by Sphingomonas elodea ATCC 31461. However, the genes involved in the biosynthesis, regulation, and modification of gellan gum have not been fully characterized. Here we describe the draft genome sequence of stain ATCC 31461 and major findings from its annotation.

Entities: Chemical Species

Mesh：

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Year: 2011 PMID： 22123766 PMCID： PMC3232862 DOI： 10.1128/JB.06307-11

Source DB: PubMed Journal: J Bacteriol ISSN： 0021-9193 Impact factor: 3.490

13 in total

Review 1. Gellan gum biosynthesis in Sphingomonas paucimobilis ATCC 31461: genes, enzymes and exopolysaccharide production engineering.

Authors: I Sá-Correia; A M Fialho; P Videira; L M Moreira; A R Marques; H Albano
Journal: J Ind Microbiol Biotechnol Date: 2002-10 Impact factor: 3.346

2. Modeling for gellan gum production by Sphingomonas paucimobilis ATCC 31461 in a simplified medium.

Authors: Xia Wang; Ping Xu; Yong Yuan; Changlong Liu; Dezhong Zhang; Zhengting Yang; Chunyu Yang; Cuiqing Ma
Journal: Appl Environ Microbiol Date: 2006-05 Impact factor: 4.792

3. Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors: Daniel R Zerbino; Ewan Birney
Journal: Genome Res Date: 2008-03-18 Impact factor: 9.043

4. Genome sequence of Sphingobium yanoikuyae XLDN2-5, an efficient carbazole-degrading strain.

Authors: Zhonghui Gai; Xiaoyu Wang; Hongzhi Tang; Cui Tai; Fei Tao; Geng Wu; Ping Xu
Journal: J Bacteriol Date: 2011-11 Impact factor: 3.490

5. Proposal of the genus Sphingomonas sensu stricto and three new genera, Sphingobium, Novosphingobium and Sphingopyxis, on the basis of phylogenetic and chemotaxonomic analyses.

Authors: M Takeuchi; K Hamana; A Hiraishi
Journal: Int J Syst Evol Microbiol Date: 2001-07 Impact factor: 2.747

6. Identification of the pgmG gene, encoding a bifunctional protein with phosphoglucomutase and phosphomannomutase activities, in the gellan gum-producing strain Sphingomonas paucimobilis ATCC 31461.

Authors: P A Videira; L L Cortes; A M Fialho; I Sá-Correia
Journal: Appl Environ Microbiol Date: 2000-05 Impact factor: 4.792

7. Structures and properties of gellan polymers produced by sphingomonas paucimobilis ATCC 31461 from lactose compared with those produced from glucose and from cheese whey

Authors:
Journal: Appl Environ Microbiol Date: 1999-06 Impact factor: 4.792

8. Organization of genes required for gellan polysaccharide biosynthesis in Sphingomonas elodea ATCC 31461.

Authors: Nancy E Harding; Yamini N Patel; Russell J Coleman
Journal: J Ind Microbiol Biotechnol Date: 2004-02-06 Impact factor: 3.346

Review 9. Occurrence, production, and applications of gellan: current state and perspectives.

Authors: Arsenio M Fialho; Leonilde M Moreira; Ana Teresa Granja; Alma O Popescu; Karen Hoffmann; Isabel Sá-Correia
Journal: Appl Microbiol Biotechnol Date: 2008-05-28 Impact factor: 4.813

10. The RAST Server: rapid annotations using subsystems technology.

Authors: Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal: BMC Genomics Date: 2008-02-08 Impact factor: 3.969

6 in total

Genome sequence of Sphingomonas elodea ATCC 31461, a highly productive industrial strain of gellan gum.

Review 1. Gellan gum biosynthesis in Sphingomonas paucimobilis ATCC 31461: genes, enzymes and exopolysaccharide production engineering.

2. Modeling for gellan gum production by Sphingomonas paucimobilis ATCC 31461 in a simplified medium.

3. Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

4. Genome sequence of Sphingobium yanoikuyae XLDN2-5, an efficient carbazole-degrading strain.

5. Proposal of the genus Sphingomonas sensu stricto and three new genera, Sphingobium, Novosphingobium and Sphingopyxis, on the basis of phylogenetic and chemotaxonomic analyses.

6. Identification of the pgmG gene, encoding a bifunctional protein with phosphoglucomutase and phosphomannomutase activities, in the gellan gum-producing strain Sphingomonas paucimobilis ATCC 31461.

7. Structures and properties of gellan polymers produced by sphingomonas paucimobilis ATCC 31461 from lactose compared with those produced from glucose and from cheese whey

8. Organization of genes required for gellan polysaccharide biosynthesis in Sphingomonas elodea ATCC 31461.

Review 9. Occurrence, production, and applications of gellan: current state and perspectives.

10. The RAST Server: rapid annotations using subsystems technology.

1. Genome sequence of the welan gum-producing strain Sphingomonas sp. ATCC 31555.

2. Comparison of 26 sphingomonad genomes reveals diverse environmental adaptations and biodegradative capabilities.

3. The evolutionary life cycle of the polysaccharide biosynthetic gene cluster based on the Sphingomonadaceae.

4. Phenotypic and proteomic analysis of positively regulated gellan biosynthesis pathway in Sphingomonas elodea.

5. Complete genome sequencing and analysis of endophytic Sphingomonas sp. LK11 and its potential in plant growth.

6. Genome Sequence of Sphingomonas xenophaga QYY, an Anthraquinone-Degrading Strain.