Literature DB >> 23045500

Genome sequence of the welan gum-producing strain Sphingomonas sp. ATCC 31555.

Xiaoyu Wang1, Fei Tao, Zhonghui Gai, Hongzhi Tang, Ping Xu.   

Abstract

Sphingomonas sp. strain ATCC 31555 can produce an anionic heteropolysaccharide, welan gum, which shows excellent stability and viscosity retention even at high temperatures. Here we present a 4.0-Mb assembly of its genome sequence. We have annotated 10 coding sequences (CDSs) responsible for the welan gum biosynthesis and 55 CDSs related to monosaccharide metabolism.

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Year:  2012        PMID： 23045500      PMCID： PMC3486109          DOI： 10.1128/JB.01486-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  9 in total

Review 1.  Gellan gum biosynthesis in Sphingomonas paucimobilis ATCC 31461: genes, enzymes and exopolysaccharide production engineering.

Authors:  I Sá-Correia; A M Fialho; P Videira; L M Moreira; A R Marques; H Albano
Journal:  J Ind Microbiol Biotechnol       Date:  2002-10       Impact factor: 3.346

2.  Genome sequence of Sphingomonas elodea ATCC 31461, a highly productive industrial strain of gellan gum.

Authors:  Zhonghui Gai; Xia Wang; Xiaoyun Zhang; Fei Su; Xiaoyu Wang; Hongzhi Tang; Cui Tai; Fei Tao; Cuiqing Ma; Ping Xu
Journal:  J Bacteriol       Date:  2011-12       Impact factor: 3.490

3.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

4.  Selective cleavage of welan gum (S-130) by oxidative decarboxylation with lead tetraacetate.

Authors:  N S Kumar; R M Ratnayake; G Widmalm; P E Jansson
Journal:  Carbohydr Res       Date:  1996-09-23       Impact factor: 2.104

5.  Organization of genes required for gellan polysaccharide biosynthesis in Sphingomonas elodea ATCC 31461.

Authors:  Nancy E Harding; Yamini N Patel; Russell J Coleman
Journal:  J Ind Microbiol Biotechnol       Date:  2004-02-06       Impact factor: 3.346

Review 6.  Occurrence, production, and applications of gellan: current state and perspectives.

Authors:  Arsenio M Fialho; Leonilde M Moreira; Ana Teresa Granja; Alma O Popescu; Karen Hoffmann; Isabel Sá-Correia
Journal:  Appl Microbiol Biotechnol       Date:  2008-05-28       Impact factor: 4.813

7.  NCBI Reference Sequences: current status, policy and new initiatives.

Authors:  Kim D Pruitt; Tatiana Tatusova; William Klimke; Donna R Maglott
Journal:  Nucleic Acids Res       Date:  2008-10-16       Impact factor: 16.971

8.  Carotenoids play a positive role in the degradation of heterocycles by Sphingobium yanoikuyae.

Authors:  Xiaorui Liu; Zhonghui Gai; Fei Tao; Hongzhi Tang; Ping Xu
Journal:  PLoS One       Date:  2012-06-20       Impact factor: 3.240

9.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
  9 in total
  4 in total

1.  Comparison of 26 sphingomonad genomes reveals diverse environmental adaptations and biodegradative capabilities.

Authors:  Frank O Aylward; Bradon R McDonald; Sandra M Adams; Alejandra Valenzuela; Rebeccah A Schmidt; Lynne A Goodwin; Tanja Woyke; Cameron R Currie; Garret Suen; Michael Poulsen
Journal:  Appl Environ Microbiol       Date:  2013-04-05       Impact factor: 4.792

Review 2.  Bacterial exopolysaccharides: biosynthesis pathways and engineering strategies.

Authors:  Jochen Schmid; Volker Sieber; Bernd Rehm
Journal:  Front Microbiol       Date:  2015-05-26       Impact factor: 5.640

3.  Draft Genome Sequence of Sphingomonas sp. WG, a Welan Gum-Producing Strain.

Authors:  Hui Li; Zhi-Mei Feng; Ya-Jie Sun; Wan-Long Zhou; Xue Jiao; Hu Zhu
Journal:  Genome Announc       Date:  2016-02-11

4.  The evolutionary life cycle of the polysaccharide biosynthetic gene cluster based on the Sphingomonadaceae.

Authors:  Mengmeng Wu; Haidong Huang; Guoqiang Li; Yi Ren; Zhong Shi; Xiaoyan Li; Xiaohui Dai; Ge Gao; Mengnan Ren; Ting Ma
Journal:  Sci Rep       Date:  2017-04-21       Impact factor: 4.379
  4 in total

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