Literature DB >> 22038966

Genome sequence of Sphingobium yanoikuyae XLDN2-5, an efficient carbazole-degrading strain.

Zhonghui Gai1, Xiaoyu Wang, Hongzhi Tang, Cui Tai, Fei Tao, Geng Wu, Ping Xu.   

Abstract

Sphingobium yanoikuyae XLDN2-5 is an efficient carbazole-degrading strain. Carbazole-degrading genes are accompanied on both sides by two copies of IS6100 elements. Here, we describe the draft genome sequence of strain XLDN2-5, which may provide important clues as to how it recruited exogenous genes to establish pathways to degrade the xenobiotics.

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Year:  2011        PMID： 22038966      PMCID： PMC3209211          DOI： 10.1128/JB.06050-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  13 in total

1.  Proposals of Sphingomonas paucimobilis gen. nov. and comb. nov., Sphingomonas parapaucimobilis sp. nov., Sphingomonas yanoikuyae sp. nov., Sphingomonas adhaesiva sp. nov., Sphingomonas capsulata comb. nov., and two genospecies of the genus Sphingomonas.

Authors:  E Yabuuchi; I Yano; H Oyaizu; Y Hashimoto; T Ezaki; H Yamamoto
Journal:  Microbiol Immunol       Date:  1990       Impact factor: 1.955

2.  Proposal of the genus Sphingomonas sensu stricto and three new genera, Sphingobium, Novosphingobium and Sphingopyxis, on the basis of phylogenetic and chemotaxonomic analyses.

Authors:  M Takeuchi; K Hamana; A Hiraishi
Journal:  Int J Syst Evol Microbiol       Date:  2001-07       Impact factor: 2.747

3.  Genomic and functional analysis of the IncP-9 naphthalene-catabolic plasmid NAH7 and its transposon Tn4655 suggests catabolic gene spread by a tyrosine recombinase.

Authors:  Masahiro Sota; Hirokazu Yano; Akira Ono; Ryo Miyazaki; Hidenori Ishii; Hiroyuki Genka; Eva M Top; Masataka Tsuda
Journal:  J Bacteriol       Date:  2006-06       Impact factor: 3.490

4.  Cometabolic degradation of dibenzofuran and dibenzothiophene by a newly isolated carbazole-degrading Sphingomonas sp. strain.

Authors:  Zhonghui Gai; Bo Yu; Li Li; Ying Wang; Cuiqing Ma; Jinhui Feng; Zixin Deng; Ping Xu
Journal:  Appl Environ Microbiol       Date:  2007-03-02       Impact factor: 4.792

5.  Complete sequence of the IncP-9 TOL plasmid pWW0 from Pseudomonas putida.

Authors:  Alicia Greated; Lotte Lambertsen; Peter A Williams; Christopher M Thomas
Journal:  Environ Microbiol       Date:  2002-12       Impact factor: 5.491

6.  Degradation of carbazole by microbial cells immobilized in magnetic gellan gum gel beads.

Authors:  Xia Wang; Zhonghui Gai; Bo Yu; Jinhui Feng; Changyong Xu; Yong Yuan; Zhixin Lin; Ping Xu
Journal:  Appl Environ Microbiol       Date:  2007-09-07       Impact factor: 4.792

7.  The genes coding for the conversion of carbazole to catechol are flanked by IS6100 elements in Sphingomonas sp. strain XLDN2-5.

Authors:  Zhonghui Gai; Xiaoyu Wang; Xiaorui Liu; Cui Tai; Hongzhi Tang; Xiaofei He; Geng Wu; Zixin Deng; Ping Xu
Journal:  PLoS One       Date:  2010-04-02       Impact factor: 3.240

8.  Nucleotide sequence and functional analysis of the complete phenol/3,4-dimethylphenol catabolic pathway of Pseudomonas sp. strain CF600.

Authors:  V Shingler; J Powlowski; U Marklund
Journal:  J Bacteriol       Date:  1992-02       Impact factor: 3.490

9.  The lower pathway operon for benzoate catabolism in biphenyl-utilizing Pseudomonas sp. strain IC and the nucleotide sequence of the bphE gene for catechol 2,3-dioxygenase.

Authors:  B Carrington; A Lowe; L E Shaw; P A Williams
Journal:  Microbiology       Date:  1994-03       Impact factor: 2.777

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
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  8 in total

1.  Genome sequence of Sphingomonas elodea ATCC 31461, a highly productive industrial strain of gellan gum.

Authors:  Zhonghui Gai; Xia Wang; Xiaoyun Zhang; Fei Su; Xiaoyu Wang; Hongzhi Tang; Cui Tai; Fei Tao; Cuiqing Ma; Ping Xu
Journal:  J Bacteriol       Date:  2011-12       Impact factor: 3.490

2.  Enrichment of endophytic Actinobacteria in roots and rhizomes of Miscanthus × giganteus plants exposed to diclofenac and sulfamethoxazole.

Authors:  Andrés Sauvêtre; Anna Węgrzyn; Luhua Yang; Gisle Vestergaard; Korneliusz Miksch; Peter Schröder; Viviane Radl
Journal:  Environ Sci Pollut Res Int       Date:  2020-01-24       Impact factor: 4.223

3.  Genome sequences of Pseudomonas luteola XLDN4-9 and Pseudomonas stutzeri XLDN-R, two efficient carbazole-degrading strains.

Authors:  Xiaorui Liu; Zhonghui Gai; Fei Tao; Hao Yu; Hongzhi Tang; Ping Xu
Journal:  J Bacteriol       Date:  2012-10       Impact factor: 3.490

4.  Comparison of 26 sphingomonad genomes reveals diverse environmental adaptations and biodegradative capabilities.

Authors:  Frank O Aylward; Bradon R McDonald; Sandra M Adams; Alejandra Valenzuela; Rebeccah A Schmidt; Lynne A Goodwin; Tanja Woyke; Cameron R Currie; Garret Suen; Michael Poulsen
Journal:  Appl Environ Microbiol       Date:  2013-04-05       Impact factor: 4.792

5.  Comparative genomic analysis of nine Sphingobium strains: insights into their evolution and hexachlorocyclohexane (HCH) degradation pathways.

Authors:  Helianthous Verma; Roshan Kumar; Phoebe Oldach; Naseer Sangwan; Jitendra P Khurana; Jack A Gilbert; Rup Lal
Journal:  BMC Genomics       Date:  2014-11-23       Impact factor: 3.969

6.  Carotenoids play a positive role in the degradation of heterocycles by Sphingobium yanoikuyae.

Authors:  Xiaorui Liu; Zhonghui Gai; Fei Tao; Hongzhi Tang; Ping Xu
Journal:  PLoS One       Date:  2012-06-20       Impact factor: 3.240

7.  Draft Genome Sequence of Sphingobium yanoikuyae TJ, a Halotolerant Di-n-Butyl-Phthalate-Degrading Bacterium.

Authors:  Decai Jin; Ying Zhu; Xinxin Wang; Xiao Kong; Huijun Liu; Yafeng Wang; Ye Deng; Minghong Jia
Journal:  Genome Announc       Date:  2016-06-16

8.  Isolation and characterization of a novel Sphingobium yanoikuyae strain variant that uses biohazardous saturated hydrocarbons and aromatic compounds as sole carbon sources.

Authors:  Mautusi Mitra; Kevin Manoap-Anh-Khoa Nguyen; Taylor Wayland Box; Jesse Scott Gilpin; Seth Ryan Hamby; Taylor Lynne Berry; Erin Harper Duckett
Journal:  F1000Res       Date:  2020-07-24
  8 in total

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