Literature DB >> 22122604

Application of nano-LC-based glycomics towards biomarker discovery.

Serenus Hua1, Carlito Lebrilla, Hyun Joo An.   

Abstract

The glycome, that is, the glycan components of a biological source, has been widely reported to change with disease states. However, mining the glycome for biomarkers is complicated by glycan structural heterogeneity. Nanoflow LC, or nano-LC, significantly addresses the problem by providing a highly sensitive and quantitative method of separating and profiling glycans. This review summarizes recent advances in analytical technology and methodology that enhance and augment the advantages offered by nano-LC. (e.g., reversed phase, hydrophilic interaction and porous graphitized carbon chromatography, as well as associated derivatization strategies), detectors (e.g., fluorescence and MS), and technology platforms (particularly chip-based nano-LC) are examined in detail, along with their application to biomarker discovery. Particular emphasis is placed on methods and technologies that allow structure-specific glycan profiling.

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Year:  2011        PMID: 22122604     DOI: 10.4155/bio.11.263

Source DB:  PubMed          Journal:  Bioanalysis        ISSN: 1757-6180            Impact factor:   2.681


  22 in total

Review 1.  Automated glycopeptide analysis--review of current state and future directions.

Authors:  David C Dallas; William F Martin; Serenus Hua; J Bruce German
Journal:  Brief Bioinform       Date:  2012-07-27       Impact factor: 11.622

Review 2.  Protein analysis by shotgun/bottom-up proteomics.

Authors:  Yaoyang Zhang; Bryan R Fonslow; Bing Shan; Moon-Chang Baek; John R Yates
Journal:  Chem Rev       Date:  2013-02-26       Impact factor: 60.622

Review 3.  Identifying cancer biomarkers by mass spectrometry-based glycomics.

Authors:  Yehia Mechref; Yunli Hu; Aldo Garcia; Ahmed Hussein
Journal:  Electrophoresis       Date:  2012-07       Impact factor: 3.535

4.  Isomeric Separation of Permethylated Glycans by Porous Graphitic Carbon (PGC)-LC-MS/MS at High Temperatures.

Authors:  Shiyue Zhou; Yifan Huang; Xue Dong; Wenjing Peng; Lucas Veillon; Daniel A S Kitagawa; Adelia J A Aquino; Yehia Mechref
Journal:  Anal Chem       Date:  2017-06-06       Impact factor: 6.986

5.  Identification and accurate quantitation of biological oligosaccharide mixtures.

Authors:  John S Strum; Jaehan Kim; Shuai Wu; Maria Lorna A De Leoz; Kyle Peacock; Rudolf Grimm; J Bruce German; David A Mills; Carlito B Lebrilla
Journal:  Anal Chem       Date:  2012-08-29       Impact factor: 6.986

Review 6.  Glycans and glycoproteins as specific biomarkers for cancer.

Authors:  Muchena J Kailemia; Dayoung Park; Carlito B Lebrilla
Journal:  Anal Bioanal Chem       Date:  2016-09-03       Impact factor: 4.142

7.  Isomer-specific chromatographic profiling yields highly sensitive and specific potential N-glycan biomarkers for epithelial ovarian cancer.

Authors:  Serenus Hua; Cynthia C Williams; Lauren M Dimapasoc; Grace S Ro; Sureyya Ozcan; Suzanne Miyamoto; Carlito B Lebrilla; Hyun Joo An; Gary S Leiserowitz
Journal:  J Chromatogr A       Date:  2013-01-11       Impact factor: 4.759

8.  Quantitative liquid chromatography-mass spectrometry-multiple reaction monitoring (LC-MS-MRM) analysis of site-specific glycoforms of haptoglobin in liver disease.

Authors:  Miloslav Sanda; Petr Pompach; Zuzana Brnakova; Jing Wu; Kepher Makambi; Radoslav Goldman
Journal:  Mol Cell Proteomics       Date:  2013-02-06       Impact factor: 5.911

9.  Isomer-specific LC/MS and LC/MS/MS profiling of the mouse serum N-glycome revealing a number of novel sialylated N-glycans.

Authors:  Serenus Hua; Ha Neul Jeong; Lauren M Dimapasoc; Inae Kang; Chanyoung Han; Jong-Soon Choi; Carlito B Lebrilla; Hyun Joo An
Journal:  Anal Chem       Date:  2013-04-18       Impact factor: 6.986

Review 10.  Defining putative glycan cancer biomarkers by MS.

Authors:  Yehia Mechref; Yunli Hu; Aldo Garcia; Shiyue Zhou; Janie L Desantos-Garcia; Ahmed Hussein
Journal:  Bioanalysis       Date:  2012-10       Impact factor: 2.681

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