Literature DB >> 22121299

A molecular phylogeny of Equatorial African Lacertidae, with the description of a new genus and species from eastern Democratic Republic of the Congo.

Eli Greenbaum1, Cesar O Villanueva, Chifundera Kusamba, Mwenebatu M Aristote, William R Branch.   

Abstract

Currently, four species of the lacertid lizard genus Adolfus are known from Central and East Africa. We sequenced up to 2,825 bp of two mitochondrial (16S and cyt b) and two nuclear (c-mos and RAG1) genes from 41 samples of Adolfus (representing every species), two species each of Gastropholis and Holaspis, and in separate analyses combined this data with GenBank sequences of all other Eremiadini genera and four Lacertini outgroups. Data from DNA sequences were analyzed with maximum parsimony (PAUP), maximum-likelihood (RAxML) and Bayesian inference (MrBayes) criteria. Results demonstrated that Adolfus is not monophyletic: A. africanus (type species), A. alleni and A. jacksoni are sister taxa, whereas A. vauereselli and a new species from the Itombwe Plateau of Democratic Republic of the Congo are in a separate lineage. Holaspis and Gastropholis were recovered in separate clades. Based on this molecular data, relatively substantial sequence divergence and multiple morphological differences, we describe a new genus of lacertid for the lineage including A. vauereselli and the new Itombwe species. The recognition of this new, endemic genus underscores the conservation importance of the Albertine Rift, especially the Itombwe Plateau, a unique region that is severely threatened by unchecked deforestation, mining and poaching.

Entities:  

Year:  2011        PMID: 22121299      PMCID: PMC3222588          DOI: 10.1111/j.1096-3642.2011.00732.x

Source DB:  PubMed          Journal:  Zool J Linn Soc        ISSN: 0024-4082            Impact factor:   3.286


  23 in total

1.  Basal divergences in birds and the phylogenetic utility of the nuclear RAG-1 gene.

Authors:  J G Groth; G F Barrowclough
Journal:  Mol Phylogenet Evol       Date:  1999-07       Impact factor: 4.286

2.  CONSEL: for assessing the confidence of phylogenetic tree selection.

Authors:  H Shimodaira; M Hasegawa
Journal:  Bioinformatics       Date:  2001-12       Impact factor: 6.937

3.  An approximately unbiased test of phylogenetic tree selection.

Authors:  Hidetoshi Shimodaira
Journal:  Syst Biol       Date:  2002-06       Impact factor: 15.683

4.  MrBayes 3: Bayesian phylogenetic inference under mixed models.

Authors:  Fredrik Ronquist; John P Huelsenbeck
Journal:  Bioinformatics       Date:  2003-08-12       Impact factor: 6.937

5.  RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models.

Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2006-08-23       Impact factor: 6.937

6.  Species concepts and species delimitation.

Authors:  Kevin De Queiroz
Journal:  Syst Biol       Date:  2007-12       Impact factor: 15.683

7.  The phylogeny of the family Lacertidae (Reptilia) based on nuclear DNA sequences: convergent adaptations to arid habitats within the subfamily Eremiainae.

Authors:  Werner Mayer; Mihaela Pavlicev
Journal:  Mol Phylogenet Evol       Date:  2007-06-09       Impact factor: 4.286

8.  jModelTest: phylogenetic model averaging.

Authors:  David Posada
Journal:  Mol Biol Evol       Date:  2008-04-08       Impact factor: 16.240

9.  Molecular systematics of the Eastern Fence Lizard (Sceloporus undulatus): a comparison of Parsimony, Likelihood, and Bayesian approaches.

Authors:  Adam D Leaché; Tod W Reeder
Journal:  Syst Biol       Date:  2002-02       Impact factor: 15.683

10.  Integration of Bayesian molecular clock methods and fossil-based soft bounds reveals early Cenozoic origin of African lacertid lizards.

Authors:  Christy A Hipsley; Lin Himmelmann; Dirk Metzler; Johannes Müller
Journal:  BMC Evol Biol       Date:  2009-07-01       Impact factor: 3.260

View more
  3 in total

1.  A phylogeny and revised classification of Squamata, including 4161 species of lizards and snakes.

Authors:  R Alexander Pyron; Frank T Burbrink; John J Wiens
Journal:  BMC Evol Biol       Date:  2013-04-29       Impact factor: 3.260

2.  Phylogeny of caucasian rock lizards (Darevskia) and other true lizards based on mitogenome analysis: Optimisation of the algorithms and gene selection.

Authors:  Marine Murtskhvaladze; David Tarkhnishvili; Cort L Anderson; Adam Kotorashvili
Journal:  PLoS One       Date:  2020-06-08       Impact factor: 3.240

3.  Evolutionary history of the river frog genus Amietia (Anura: Pyxicephalidae) reveals extensive diversification in Central African highlands.

Authors:  Thornton R Larson; Delilah Castro; Mathias Behangana; Eli Greenbaum
Journal:  Mol Phylogenet Evol       Date:  2016-03-26       Impact factor: 4.286

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.