Literature DB >> 17716738

Nickel and the carbon cycle.

Stephen W Ragsdale1.   

Abstract

This article, dedicated to Edward Stiefel, reviews three nickel enzymes that play important roles in the carbon cycle: CO dehydrogenase, acetyl-CoA synthase, and methyl-coenzyme M reductase. After a short discussion of the carbon cycle, the structures of the active centers of the proteins and their proposed mechanisms are discussed. A brief description of future research areas is presented for each enzyme system. A short perspective on future research on nickel enzymes ends this contribution.

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Year:  2007        PMID: 17716738      PMCID: PMC2100024          DOI: 10.1016/j.jinorgbio.2007.07.014

Source DB:  PubMed          Journal:  J Inorg Biochem        ISSN: 0162-0134            Impact factor:   4.155


  72 in total

1.  Ni-Zn-[Fe4-S4] and Ni-Ni-[Fe4-S4] clusters in closed and open subunits of acetyl-CoA synthase/carbon monoxide dehydrogenase.

Authors:  Claudine Darnault; Anne Volbeda; Eun Jin Kim; Pierre Legrand; Xavier Vernède; Paul A Lindahl; Juan C Fontecilla-Camps
Journal:  Nat Struct Biol       Date:  2003-04

2.  Reduction and methyl transfer kinetics of the alpha subunit from acetyl coenzyme a synthase.

Authors:  Xiangshi Tan; Christopher Sewell; Qingwu Yang; Paul A Lindahl
Journal:  J Am Chem Soc       Date:  2003-01-15       Impact factor: 15.419

3.  A novel binuclear [CuSMo] cluster at the active site of carbon monoxide dehydrogenase: characterization by X-ray absorption spectroscopy.

Authors:  Manuel Gnida; Reinhold Ferner; Lothar Gremer; Ortwin Meyer; Wolfram Meyer-Klaucke
Journal:  Biochemistry       Date:  2003-01-14       Impact factor: 3.162

4.  Catalysis at a dinuclear [CuSMo(==O)OH] cluster in a CO dehydrogenase resolved at 1.1-A resolution.

Authors:  Holger Dobbek; Lothar Gremer; Reiner Kiefersauer; Robert Huber; Ortwin Meyer
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-10       Impact factor: 11.205

5.  Purification and catalytic properties of a CO-oxidizing:H2-evolving enzyme complex from Carboxydothermus hydrogenoformans.

Authors:  Basem Soboh; Dietmar Linder; Reiner Hedderich
Journal:  Eur J Biochem       Date:  2002-11

6.  Functional copper at the acetyl-CoA synthase active site.

Authors:  Javier Seravalli; Weiwei Gu; Annie Tam; Erick Strauss; Tadhg P Begley; Stephen P Cramer; Stephen W Ragsdale
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-14       Impact factor: 11.205

7.  Infrared studies of carbon monoxide binding to carbon monoxide dehydrogenase/acetyl-CoA synthase from Moorella thermoacetica.

Authors:  Jingyi Chen; Shan Huang; Javier Seravalli; Howard Gutzman; Derrick J Swartz; Stephen W Ragsdale; Kimberly A Bagley
Journal:  Biochemistry       Date:  2003-12-23       Impact factor: 3.162

8.  Computational studies on the A cluster of acetyl-coenzyme A synthase: geometric and electronic properties of the NiFeC species and mechanistic implications.

Authors:  Ralph P Schenker; Thomas C Brunold
Journal:  J Am Chem Soc       Date:  2003-11-19       Impact factor: 15.419

9.  A functional Ni-Ni-[4Fe-4S] cluster in the monomeric acetyl-CoA synthase from Carboxydothermus hydrogenoformans.

Authors:  Vitali Svetlitchnyi; Holger Dobbek; Wolfram Meyer-Klaucke; Thomas Meins; Bärbel Thiele; Piero Römer; Robert Huber; Ortwin Meyer
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-29       Impact factor: 11.205

Review 10.  The many faces of vitamin B12: catalysis by cobalamin-dependent enzymes.

Authors:  Ruma Banerjee; Stephen W Ragsdale
Journal:  Annu Rev Biochem       Date:  2003       Impact factor: 23.643

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  34 in total

1.  Bisamidate and mixed amine/amidate NiN2S2 complexes as models for nickel-containing acetyl coenzyme A synthase and superoxide dismutase: an experimental and computational study.

Authors:  Vaidyanathan Mathrubootham; Jason Thomas; Richard Staples; John McCraken; Jason Shearer; Eric L Hegg
Journal:  Inorg Chem       Date:  2010-06-21       Impact factor: 5.165

Review 2.  Frontiers, opportunities, and challenges in biochemical and chemical catalysis of CO2 fixation.

Authors:  Aaron M Appel; John E Bercaw; Andrew B Bocarsly; Holger Dobbek; Daniel L DuBois; Michel Dupuis; James G Ferry; Etsuko Fujita; Russ Hille; Paul J A Kenis; Cheryl A Kerfeld; Robert H Morris; Charles H F Peden; Archie R Portis; Stephen W Ragsdale; Thomas B Rauchfuss; Joost N H Reek; Lance C Seefeldt; Rudolf K Thauer; Grover L Waldrop
Journal:  Chem Rev       Date:  2013-06-14       Impact factor: 60.622

3.  A biomarker based on the stable isotopes of nickel.

Authors:  Vyllinniskii Cameron; Derek Vance; Corey Archer; Christopher H House
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-24       Impact factor: 11.205

Review 4.  Acetogenesis and the Wood-Ljungdahl pathway of CO(2) fixation.

Authors:  Stephen W Ragsdale; Elizabeth Pierce
Journal:  Biochim Biophys Acta       Date:  2008-08-27

5.  Binuclear complexes containing a methylnickel moiety: relevance to organonickel intermediates in acetyl coenzyme A synthase catalysis.

Authors:  William G Dougherty; Krishnan Rangan; Molly J O'Hagan; Glenn P A Yap; Charles G Riordan
Journal:  J Am Chem Soc       Date:  2008-09-19       Impact factor: 15.419

Review 6.  The Metal Drives the Chemistry: Dual Functions of Acireductone Dioxygenase.

Authors:  Aditi R Deshpande; Thomas C Pochapsky; Dagmar Ringe
Journal:  Chem Rev       Date:  2017-07-21       Impact factor: 60.622

7.  Exploring the applicability of density functional tight binding to transition metal ions. Parameterization for nickel with the spin-polarized DFTB3 model.

Authors:  Milena Vujović; Mioy Huynh; Sebastian Steiner; Pablo Garcia-Fernandez; Marcus Elstner; Qiang Cui; Maja Gruden
Journal:  J Comput Chem       Date:  2018-10-09       Impact factor: 3.376

Review 8.  Carbon monoxide--physiology, detection and controlled release.

Authors:  Stefan H Heinemann; Toshinori Hoshi; Matthias Westerhausen; Alexander Schiller
Journal:  Chem Commun (Camb)       Date:  2014-04-11       Impact factor: 6.222

9.  Mossbauer evidence for an exchange-coupled {[Fe4S4]1+ Nip1+} A-cluster in isolated alpha subunits of acetyl-coenzyme A synthase/carbon monoxide dehydrogenase.

Authors:  Xiangshi Tan; Marlène Martinho; Audria Stubna; Paul A Lindahl; Eckard Münck
Journal:  J Am Chem Soc       Date:  2008-05-07       Impact factor: 15.419

Review 10.  Nickel-based Enzyme Systems.

Authors:  Stephen W Ragsdale
Journal:  J Biol Chem       Date:  2009-04-10       Impact factor: 5.157

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