Literature DB >> 22119777

Solution NMR spectroscopic characterization of human VDAC-2 in detergent micelles and lipid bilayer nanodiscs.

Tsyr-Yan Yu1, Thomas Raschle, Sebastian Hiller, Gerhard Wagner.   

Abstract

Three isoforms of the human voltage-dependent anion channel (VDAC), located in the outer mitochondrial membrane, are crucial regulators of mitochondrial function. Numerous studies have been carried out to elucidate biochemical properties, as well as the three-dimensional structure of VDAC-1. However, functional and structural studies of VDAC-2 and VDAC-3 at atomic resolution are still scarce. VDAC-2 is highly similar to VDAC-1 in amino acid sequence, but has substantially different biochemical functions and expression profiles. Here, we report the reconstitution of functional VDAC-2 in lauryldimethylamine-oxide (LDAO) detergent micelles and 1,2-dimyristoyl-sn-glycero-3-phosphocholine (DMPC) lipid bilayer nanodiscs. We find that VDAC-2 is properly folded in both membrane-mimicking systems and that structural and functional characterization by solution NMR spectroscopy is feasible. This article is part of a Special Issue entitled: VDAC structure, function, and regulation of mitochondrial metabolism.
Copyright © 2011 Elsevier B.V. All rights reserved.

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Year:  2011        PMID: 22119777      PMCID: PMC3321126          DOI: 10.1016/j.bbamem.2011.11.012

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  33 in total

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Authors:  John G Pastorino; Nataly Shulga; Jan B Hoek
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2.  Structure of outer membrane protein A transmembrane domain by NMR spectroscopy.

Authors:  A Arora; F Abildgaard; J H Bushweller; L K Tamm
Journal:  Nat Struct Biol       Date:  2001-04

3.  NMR structural investigation of the mitochondrial outer membrane protein VDAC and its interaction with antiapoptotic Bcl-xL.

Authors:  Thomas J Malia; Gerhard Wagner
Journal:  Biochemistry       Date:  2007-01-16       Impact factor: 3.162

4.  Structure of outer membrane protein G by solution NMR spectroscopy.

Authors:  Binyong Liang; Lukas K Tamm
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-02       Impact factor: 11.205

5.  Human gelsolin prevents apoptosis by inhibiting apoptotic mitochondrial changes via closing VDAC.

Authors:  H Kusano; S Shimizu; R C Koya; H Fujita; S Kamada; N Kuzumaki; Y Tsujimoto
Journal:  Oncogene       Date:  2000-10-05       Impact factor: 9.867

6.  Structure and mechanism of the M2 proton channel of influenza A virus.

Authors:  Jason R Schnell; James J Chou
Journal:  Nature       Date:  2008-01-31       Impact factor: 49.962

7.  RAS-RAF-MEK-dependent oxidative cell death involving voltage-dependent anion channels.

Authors:  Nicholas Yagoda; Moritz von Rechenberg; Elma Zaganjor; Andras J Bauer; Wan Seok Yang; Daniel J Fridman; Adam J Wolpaw; Inese Smukste; John M Peltier; J Jay Boniface; Richard Smith; Stephen L Lessnick; Sudhir Sahasrabudhe; Brent R Stockwell
Journal:  Nature       Date:  2007-06-14       Impact factor: 49.962

8.  Functional model of metabolite gating by human voltage-dependent anion channel 2.

Authors:  Andras J Bauer; Simone Gieschler; Kathryn M Lemberg; Ann E McDermott; Brent R Stockwell
Journal:  Biochemistry       Date:  2011-04-06       Impact factor: 3.162

9.  VDAC-dependent permeabilization of the outer mitochondrial membrane by superoxide induces rapid and massive cytochrome c release.

Authors:  M Madesh; G Hajnóczky
Journal:  J Cell Biol       Date:  2001-12-10       Impact factor: 10.539

10.  Essential role of voltage-dependent anion channel in various forms of apoptosis in mammalian cells.

Authors:  S Shimizu; Y Matsuoka; Y Shinohara; Y Yoneda; Y Tsujimoto
Journal:  J Cell Biol       Date:  2001-01-22       Impact factor: 10.539

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  23 in total

1.  Characterization of the insertase BamA in three different membrane mimetics by solution NMR spectroscopy.

Authors:  Leonor Morgado; Kornelius Zeth; Björn M Burmann; Timm Maier; Sebastian Hiller
Journal:  J Biomol NMR       Date:  2015-02-01       Impact factor: 2.835

Review 2.  Nanodiscs as a new tool to examine lipid-protein interactions.

Authors:  Mary A Schuler; Ilia G Denisov; Stephen G Sligar
Journal:  Methods Mol Biol       Date:  2013

3.  Chemical Additives Enable Native Mass Spectrometry Measurement of Membrane Protein Oligomeric State within Intact Nanodiscs.

Authors:  James E Keener; Dane Evan Zambrano; Guozhi Zhang; Ciara K Zak; Deseree J Reid; Bhushan S Deodhar; Jeanne E Pemberton; James S Prell; Michael T Marty
Journal:  J Am Chem Soc       Date:  2019-01-07       Impact factor: 15.419

Review 4.  Solution NMR: A powerful tool for structural and functional studies of membrane proteins in reconstituted environments.

Authors:  Robbins Puthenveetil; Olga Vinogradova
Journal:  J Biol Chem       Date:  2019-09-24       Impact factor: 5.157

5.  Optimized phospholipid bilayer nanodiscs facilitate high-resolution structure determination of membrane proteins.

Authors:  Franz Hagn; Manuel Etzkorn; Thomas Raschle; Gerhard Wagner
Journal:  J Am Chem Soc       Date:  2013-01-25       Impact factor: 15.419

6.  Structural characterization of the human membrane protein VDAC2 in lipid bilayers by MAS NMR.

Authors:  Matthew T Eddy; Tsyr-Yan Yu; Gerhard Wagner; Robert G Griffin
Journal:  J Biomol NMR       Date:  2019-08-12       Impact factor: 2.835

7.  Assembly of phospholipid nanodiscs of controlled size for structural studies of membrane proteins by NMR.

Authors:  Franz Hagn; Mahmoud L Nasr; Gerhard Wagner
Journal:  Nat Protoc       Date:  2017-12-07       Impact factor: 13.491

8.  Nanodiscs in the studies of membrane-bound cytochrome P450 enzymes.

Authors:  A Luthra; M Gregory; Y V Grinkova; I G Denisov; S G Sligar
Journal:  Methods Mol Biol       Date:  2013

9.  Detergent/nanodisc screening for high-resolution NMR studies of an integral membrane protein containing a cytoplasmic domain.

Authors:  Christos Tzitzilonis; Cédric Eichmann; Innokentiy Maslennikov; Senyon Choe; Roland Riek
Journal:  PLoS One       Date:  2013-01-22       Impact factor: 3.240

10.  Modulation of human mitochondrial voltage-dependent anion channel 2 (hVDAC-2) structural stability by cysteine-assisted barrel-lipid interactions.

Authors:  Svetlana Rajkumar Maurya; Radhakrishnan Mahalakshmi
Journal:  J Biol Chem       Date:  2013-07-19       Impact factor: 5.157

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