Literature DB >> 23475672

Nanodiscs in the studies of membrane-bound cytochrome P450 enzymes.

A Luthra1, M Gregory, Y V Grinkova, I G Denisov, S G Sligar.   

Abstract

Cytochromes P450 from eukaryotes and their native redox partners cytochrome P450 reductases both belong to the class of monotopic membrane proteins containing one transmembrane anchor. Incorporation into the lipid bilayer significantly affects their equilibrium and kinetic properties and plays an important role in their interactions. We describe here the detailed protocols developed in our group for the functional self-assembly of mammalian cytochromes P450 and cytochrome P450 reductases into Nanodiscs with controlled lipid composition. The resulting preparations are fully functional, homogeneous in size, composition and oligomerization state of the heme enzyme, and show an improved stability with respect to P420 formation. We provide a brief overview of applications of Nanodisc technology to the biophysical and biochemical mechanistic studies of cytochromes P450 involved in steroidogenesis, and of the most abundant xenobiotic-metabolizing human cytochrome P450 CYP3A4.

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Year:  2013        PMID: 23475672      PMCID: PMC4197956          DOI: 10.1007/978-1-62703-321-3_10

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  71 in total

1.  Conformational analysis of human ATP-binding cassette transporter ABCB1 in lipid nanodiscs and inhibition by the antibodies MRK16 and UIC2.

Authors:  Tasha K Ritchie; Hyewon Kwon; William M Atkins
Journal:  J Biol Chem       Date:  2011-09-21       Impact factor: 5.157

Review 2.  Finding a single-molecule solution for membrane proteins.

Authors:  Stephen G Sligar
Journal:  Biochem Biophys Res Commun       Date:  2003-12-05       Impact factor: 3.575

3.  Core unit of chemotaxis signaling complexes.

Authors:  Mingshan Li; Gerald L Hazelbauer
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-23       Impact factor: 11.205

4.  Temperature derivative spectroscopy to monitor the autoxidation decay of cytochromes P450.

Authors:  Abhinav Luthra; Ilia G Denisov; Stephen G Sligar
Journal:  Anal Chem       Date:  2011-06-14       Impact factor: 6.986

5.  Rhodopsin in nanodiscs has native membrane-like photointermediates.

Authors:  Hisao Tsukamoto; Istvan Szundi; James W Lewis; David L Farrens; David S Kliger
Journal:  Biochemistry       Date:  2011-05-13       Impact factor: 3.162

6.  Homotropic cooperativity of monomeric cytochrome P450 3A4 in a nanoscale native bilayer environment.

Authors:  Bradley J Baas; Ilia G Denisov; Stephen G Sligar
Journal:  Arch Biochem Biophys       Date:  2004-10-15       Impact factor: 4.013

7.  Directed self-assembly of monodisperse phospholipid bilayer Nanodiscs with controlled size.

Authors:  I G Denisov; Y V Grinkova; A A Lazarides; S G Sligar
Journal:  J Am Chem Soc       Date:  2004-03-24       Impact factor: 15.419

8.  Cryo-EM structure of the ribosome-SecYE complex in the membrane environment.

Authors:  Jens Frauenfeld; James Gumbart; Eli O van der Sluis; Soledad Funes; Marco Gartmann; Birgitta Beatrix; Thorsten Mielke; Otto Berninghausen; Thomas Becker; Klaus Schulten; Roland Beckmann
Journal:  Nat Struct Mol Biol       Date:  2011-04-17       Impact factor: 15.369

9.  Structure and dynamics of the membrane-bound cytochrome P450 2C9.

Authors:  Vlad Cojocaru; Kia Balali-Mood; Mark S P Sansom; Rebecca C Wade
Journal:  PLoS Comput Biol       Date:  2011-08-11       Impact factor: 4.779

10.  Membrane position of ibuprofen agrees with suggested access path entrance to cytochrome P450 2C9 active site.

Authors:  Karel Berka; Tereza Hendrychová; Pavel Anzenbacher; Michal Otyepka
Journal:  J Phys Chem A       Date:  2011-07-11       Impact factor: 2.781

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  26 in total

1.  Correction to "Allosteric Interactions in Human Cytochrome P450 CYP3A4: The Role of Phenylalanine 213".

Authors:  Ilia G Denisov; Yelena V Grinkova; Prithviraj Nandigrami; Mrinal Shekhar; Emad Tajkhorshid; Stephen G Sligar
Journal:  Biochemistry       Date:  2019-06-06       Impact factor: 3.162

Review 2.  Spectroscopic studies of the cytochrome P450 reaction mechanisms.

Authors:  Piotr J Mak; Ilia G Denisov
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2017-06-28       Impact factor: 3.036

Review 3.  Nanodiscs in Membrane Biochemistry and Biophysics.

Authors:  Ilia G Denisov; Stephen G Sligar
Journal:  Chem Rev       Date:  2017-02-08       Impact factor: 60.622

4.  Heme Binding Biguanides Target Cytochrome P450-Dependent Cancer Cell Mitochondria.

Authors:  Zhijun Guo; Irina F Sevrioukova; Ilia G Denisov; Xia Zhang; Ting-Lan Chiu; Dafydd G Thomas; Eric A Hanse; Rebecca A D Cuellar; Yelena V Grinkova; Vanessa Wankhede Langenfeld; Daniel S Swedien; Justin D Stamschror; Juan Alvarez; Fernando Luna; Adela Galván; Young Kyung Bae; Julia D Wulfkuhle; Rosa I Gallagher; Emanuel F Petricoin; Beverly Norris; Craig M Flory; Robert J Schumacher; M Gerard O'Sullivan; Qing Cao; Haitao Chu; John D Lipscomb; William M Atkins; Kalpna Gupta; Ameeta Kelekar; Ian A Blair; Jorge H Capdevila; John R Falck; Stephen G Sligar; Thomas L Poulos; Gunda I Georg; Elizabeth Ambrose; David A Potter
Journal:  Cell Chem Biol       Date:  2017-09-14       Impact factor: 8.116

5.  Nanodiscs: A Controlled Bilayer Surface for the Study of Membrane Proteins.

Authors:  Mark A McLean; Michael C Gregory; Stephen G Sligar
Journal:  Annu Rev Biophys       Date:  2018-03-01       Impact factor: 12.981

6.  Human P450 CYP17A1: Control of Substrate Preference by Asparagine 202.

Authors:  Michael C Gregory; Piotr J Mak; Yogan Khatri; James R Kincaid; Stephen G Sligar
Journal:  Biochemistry       Date:  2018-01-24       Impact factor: 3.162

7.  Resonance Raman spectroscopy reveals that substrate structure selectively impacts the heme-bound diatomic ligands of CYP17.

Authors:  Piotr J Mak; Michael C Gregory; Stephen G Sligar; James R Kincaid
Journal:  Biochemistry       Date:  2013-12-20       Impact factor: 3.162

8.  Human Cytochrome CYP17A1: The Structural Basis for Compromised Lyase Activity with 17-Hydroxyprogesterone.

Authors:  Piotr J Mak; Ruchia Duggal; Ilia G Denisov; Michael C Gregory; Stephen G Sligar; James R Kincaid
Journal:  J Am Chem Soc       Date:  2018-06-05       Impact factor: 15.419

9.  Active site proton delivery and the lyase activity of human CYP17A1.

Authors:  Yogan Khatri; Michael C Gregory; Yelena V Grinkova; Ilia G Denisov; Stephen G Sligar
Journal:  Biochem Biophys Res Commun       Date:  2013-12-02       Impact factor: 3.575

10.  Kinetic solvent isotope effect in steady-state turnover by CYP19A1 suggests involvement of Compound 1 for both hydroxylation and aromatization steps.

Authors:  Yogan Khatri; Abhinav Luthra; Ruchia Duggal; Stephen G Sligar
Journal:  FEBS Lett       Date:  2014-07-02       Impact factor: 4.124

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