Literature DB >> 22110059

pTransgenesis: a cross-species, modular transgenesis resource.

Nick R Love1, Raphael Thuret, Yaoyao Chen, Shoko Ishibashi, Nitin Sabherwal, Roberto Paredes, Juliana Alves-Silva, Karel Dorey, Anna M Noble, Matthew J Guille, Yoshiki Sasai, Nancy Papalopulu, Enrique Amaya.   

Abstract

As studies aim increasingly to understand key, evolutionarily conserved properties of biological systems, the ability to move transgenesis experiments efficiently between organisms becomes essential. DNA constructions used in transgenesis usually contain four elements, including sequences that facilitate transgene genome integration, a selectable marker and promoter elements driving a coding gene. Linking these four elements in a DNA construction, however, can be a rate-limiting step in the design and creation of transgenic organisms. In order to expedite the construction process and to facilitate cross-species collaborations, we have incorporated the four common elements of transgenesis into a modular, recombination-based cloning system called pTransgenesis. Within this framework, we created a library of useful coding sequences, such as various fluorescent protein, Gal4, Cre-recombinase and dominant-negative receptor constructs, which are designed to be coupled to modular, species-compatible selectable markers, promoters and transgenesis facilitation sequences. Using pTransgenesis in Xenopus, we demonstrate Gal4-UAS binary expression, Cre-loxP-mediated fate-mapping and the establishment of novel, tissue-specific transgenic lines. Importantly, we show that the pTransgenesis resource is also compatible with transgenesis in Drosophila, zebrafish and mammalian cell models. Thus, the pTransgenesis resource fosters a cross-model standardization of commonly used transgenesis elements, streamlines DNA construct creation and facilitates collaboration between researchers working on different model organisms.

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Year:  2011        PMID: 22110059      PMCID: PMC3222217          DOI: 10.1242/dev.066498

Source DB:  PubMed          Journal:  Development        ISSN: 0950-1991            Impact factor:   6.868


  54 in total

1.  Gut specific expression using mammalian promoters in transgenic Xenopus laevis.

Authors:  C W Beck; J M Slack
Journal:  Mech Dev       Date:  1999-11       Impact factor: 1.882

2.  DNA cloning using in vitro site-specific recombination.

Authors:  J L Hartley; G F Temple; M A Brasch
Journal:  Genome Res       Date:  2000-11       Impact factor: 9.043

3.  FLP and Cre recombinase function in Xenopus embryos.

Authors:  D Werdien; G Peiler; G U Ryffel
Journal:  Nucleic Acids Res       Date:  2001-06-01       Impact factor: 16.971

4.  Rapid selection of transgenic C. elegans using antibiotic resistance.

Authors:  Jennifer I Semple; Rosa Garcia-Verdugo; Ben Lehner
Journal:  Nat Methods       Date:  2010-08-22       Impact factor: 28.547

5.  Glial-defined boundaries in Xenopus CNS.

Authors:  M Yoshida
Journal:  Dev Neurosci       Date:  2001       Impact factor: 2.984

6.  A role for BMP signalling in heart looping morphogenesis in Xenopus.

Authors:  R A Breckenridge; T J Mohun; E Amaya
Journal:  Dev Biol       Date:  2001-04-01       Impact factor: 3.582

7.  Germline transmission and tissue-specific expression of transgenes delivered by lentiviral vectors.

Authors:  Carlos Lois; Elizabeth J Hong; Shirley Pease; Eric J Brown; David Baltimore
Journal:  Science       Date:  2002-01-10       Impact factor: 47.728

8.  Ubiquitous transgene expression and Cre-based recombination driven by the ubiquitin promoter in zebrafish.

Authors:  Christian Mosimann; Charles K Kaufman; Pulin Li; Emily K Pugach; Owen J Tamplin; Leonard I Zon
Journal:  Development       Date:  2011-01       Impact factor: 6.868

9.  A simple method of transgenesis using I-SceI meganuclease in Xenopus.

Authors:  Shoko Ishibashi; Nick R Love; Enrique Amaya
Journal:  Methods Mol Biol       Date:  2012

10.  The development of Xenopus tropicalis transgenic lines and their use in studying lens developmental timing in living embryos.

Authors:  M F Offield; N Hirsch; R M Grainger
Journal:  Development       Date:  2000-05       Impact factor: 6.868

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  22 in total

Review 1.  Expanding the genetic toolkit in Xenopus: Approaches and opportunities for human disease modeling.

Authors:  Panna Tandon; Frank Conlon; J David Furlow; Marko E Horb
Journal:  Dev Biol       Date:  2016-04-22       Impact factor: 3.582

2.  Zebrafish transgenic constructs label specific neurons in Xenopus laevis spinal cord and identify frog V0v spinal neurons.

Authors:  José L Juárez-Morales; Reyna I Martinez-De Luna; Michael E Zuber; Alan Roberts; Katharine E Lewis
Journal:  Dev Neurobiol       Date:  2017-03-08       Impact factor: 3.964

3.  Activin-A enhances mTOR signaling to promote aberrant chondrogenesis in fibrodysplasia ossificans progressiva.

Authors:  Kyosuke Hino; Kazuhiko Horigome; Megumi Nishio; Shingo Komura; Sanae Nagata; Chengzhu Zhao; Yonghui Jin; Koichi Kawakami; Yasuhiro Yamada; Akira Ohta; Junya Toguchida; Makoto Ikeya
Journal:  J Clin Invest       Date:  2017-07-31       Impact factor: 14.808

Review 4.  Transposons As Tools for Functional Genomics in Vertebrate Models.

Authors:  Koichi Kawakami; David A Largaespada; Zoltán Ivics
Journal:  Trends Genet       Date:  2017-09-06       Impact factor: 11.639

5.  Generating transgenic frog embryos by restriction enzyme mediated integration (REMI).

Authors:  Shoko Ishibashi; Kristen L Kroll; Enrique Amaya
Journal:  Methods Mol Biol       Date:  2012

6.  Identification of a regeneration-organizing cell in the Xenopus tail.

Authors:  C Aztekin; T W Hiscock; J C Marioni; J B Gurdon; B D Simons; J Jullien
Journal:  Science       Date:  2019-05-17       Impact factor: 47.728

7.  NAD kinase controls animal NADP biosynthesis and is modulated via evolutionarily divergent calmodulin-dependent mechanisms.

Authors:  Nick R Love; Nadine Pollak; Christian Dölle; Marc Niere; Yaoyao Chen; Paola Oliveri; Enrique Amaya; Sandip Patel; Mathias Ziegler
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-20       Impact factor: 11.205

8.  A plasmid toolkit for cloning chimeric cDNAs encoding customized fusion proteins into any Gateway destination expression vector.

Authors:  Raquel Buj; Noa Iglesias; Anna M Planas; Tomàs Santalucía
Journal:  BMC Mol Biol       Date:  2013-08-20       Impact factor: 2.946

9.  Amputation-induced reactive oxygen species are required for successful Xenopus tadpole tail regeneration.

Authors:  Nick R Love; Yaoyao Chen; Shoko Ishibashi; Paraskevi Kritsiligkou; Robert Lea; Yvette Koh; Jennifer L Gallop; Karel Dorey; Enrique Amaya
Journal:  Nat Cell Biol       Date:  2013-01-13       Impact factor: 28.824

10.  Carbohydrate metabolism during vertebrate appendage regeneration: what is its role? How is it regulated?: A postulation that regenerating vertebrate appendages facilitate glycolytic and pentose phosphate pathways to fuel macromolecule biosynthesis.

Authors:  Nick R Love; Mathias Ziegler; Yaoyao Chen; Enrique Amaya
Journal:  Bioessays       Date:  2013-11-22       Impact factor: 4.345

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