Literature DB >> 22107237

Three classes of motion in the dynamic neutron-scattering susceptibility of a globular protein.

Liang Hong1, Nikolai Smolin, Benjamin Lindner, Alexei P Sokolov, Jeremy C Smith.   

Abstract

A simplified description of the 295 K dynamics of a globular protein over a wide frequency range (1-1000 GHz) is obtained by combining neutron scattering of lysozyme with molecular dynamics simulation. The molecular dynamics simulation agrees quantitatively with experiment for both the protein and the hydration water and shows that, whereas the hydration water molecules subdiffuse, the protein atoms undergo confined motion decomposable into three distinct classes: localized diffusion, methyl group rotations, and jumps. Each of the three classes gives rise to a characteristic neutron susceptibility signal.

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Year:  2011        PMID: 22107237     DOI: 10.1103/PhysRevLett.107.148102

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  12 in total

1.  Fast Motions of Key Methyl Groups in Amyloid-β Fibrils.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky; Matthew A Clark; Isaac B Falconer; Gina L Hoatson; Wei Qiang
Journal:  Biophys J       Date:  2016-11-15       Impact factor: 4.033

2.  Coupled flexibility change in cytochrome P450cam substrate binding determined by neutron scattering, NMR, and molecular dynamics simulation.

Authors:  Yinglong Miao; Zheng Yi; Carey Cantrell; Dennis C Glass; Jerome Baudry; Nitin Jain; Jeremy C Smith
Journal:  Biophys J       Date:  2012-11-20       Impact factor: 4.033

3.  Dynamics of protein and its hydration water: neutron scattering studies on fully deuterated GFP.

Authors:  Jonathan D Nickels; Hugh O'Neill; Liang Hong; Madhusudan Tyagi; Georg Ehlers; Kevin L Weiss; Qiu Zhang; Zheng Yi; Eugene Mamontov; Jeremy C Smith; Alexei P Sokolov
Journal:  Biophys J       Date:  2012-10-02       Impact factor: 4.033

4.  Structure and dynamics of a compact state of a multidomain protein, the mercuric ion reductase.

Authors:  Liang Hong; Melissa A Sharp; Simón Poblete; Ralf Biehl; Michaela Zamponi; Noemi Szekely; Marie-Sousai Appavou; Roland G Winkler; Rachel E Nauss; Alexander Johs; Jerry M Parks; Zheng Yi; Xiaolin Cheng; Liyuan Liang; Michael Ohl; Susan M Miller; Dieter Richter; Gerhard Gompper; Jeremy C Smith
Journal:  Biophys J       Date:  2014-07-15       Impact factor: 4.033

5.  Resolution and characterization of contributions of select protein and coupled solvent configurational fluctuations to radical rearrangement catalysis in coenzyme B12-dependent ethanolamine ammonia-lyase.

Authors:  Meghan Kohne; Wei Li; Alina Ionescu; Chen Zhu; Kurt Warncke
Journal:  Methods Enzymol       Date:  2022-01-29       Impact factor: 1.682

6.  Quasi-elastic Neutron Scattering Reveals Ligand-Induced Protein Dynamics of a G-Protein-Coupled Receptor.

Authors:  Utsab R Shrestha; Suchithranga M D C Perera; Debsindhu Bhowmik; Udeep Chawla; Eugene Mamontov; Michael F Brown; Xiang-Qiang Chu
Journal:  J Phys Chem Lett       Date:  2016-10-04       Impact factor: 6.475

7.  Dynamics of lysozyme and its hydration water under an electric field.

Authors:  P M Favi; Q Zhang; H O'Neill; E Mamontov; S O Diallo
Journal:  J Biol Phys       Date:  2014-03-25       Impact factor: 1.365

8.  Coupling of ethanolamine ammonia-lyase protein and solvent dynamics characterized by the temperature-dependence of EPR spin probe mobility and dielectric permittivity.

Authors:  Alina Ionescu; Wei Li; Benjamen Nforneh; Kurt Warncke
Journal:  J Chem Phys       Date:  2021-05-07       Impact factor: 3.488

9.  Thermal activation of 'allosteric-like' large-scale motions in a eukaryotic Lactate Dehydrogenase.

Authors:  Marina Katava; Marco Maccarini; Guillaume Villain; Alessandro Paciaroni; Michael Sztucki; Oxana Ivanova; Dominique Madern; Fabio Sterpone
Journal:  Sci Rep       Date:  2017-01-23       Impact factor: 4.379

10.  The Dynamics of Hydrated Proteins Are the Same as Those of Highly Asymmetric Mixtures of Two Glass-Formers.

Authors:  Simone Capaccioli; Lirong Zheng; Apostolos Kyritsis; Alessandro Paciaroni; Michael Vogel; Kia L Ngai
Journal:  ACS Omega       Date:  2020-12-23
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