Literature DB >> 34241057

Coupling of ethanolamine ammonia-lyase protein and solvent dynamics characterized by the temperature-dependence of EPR spin probe mobility and dielectric permittivity.

Alina Ionescu1, Wei Li1, Benjamen Nforneh1, Kurt Warncke1.   

Abstract

Electron paramagnetic resonance (EPR) spectroscopy is used to address the remarkable persistence of the native Arrhenius dependence of the 2-aminopropanol substrate radical rearrangement reaction in B12-dependent ethanolamine ammonia-lyase (EAL) from Salmonella typhimurium from physiological to cryogenic (220 K) temperatures. Two-component TEMPOL spin probe mobility in the presence of 10 mM (0.08% v/v) 2-aminopropanol over 200-265 K demonstrates characteristic concentric aqueous-cosolvent mesodomain and protein-associated domain (PAD, hydration layer) solvent phases around EAL in the frozen solution. The mesodomain formed by the relatively small amount of 2-aminopropanol is highly confined, as shown by an elevated temperature for the order-disorder transition (ODT) in the PAD (230-235 K) and large activation energy for TEMPOL rotation. Addition of 2% v/v dimethylsulfoxide expands the mesodomain, partially relieves PAD confinement, and leads to an ODT at 205-210 K. The ODT is also manifested as a deviation of the temperature-dependence of the EPR amplitude of cob(II)alamin and the substrate radical, bound in the enzyme active site, from Curie law behavior. This is attributed to an increase in sample dielectric permittivity above the ODT at the microwave frequency of 9.5 GHz. The relatively high frequency dielectric response indicates an origin in coupled protein surface group-water fluctuations of the Johari-Goldstein β type that span spatial scales of ∼0.1-10 Å on temporal scales of 10-10-10-7 s. The orthogonal EPR spin probe rotational mobility and solvent dielectric measurements characterize features of EAL protein-solvent dynamical coupling and reveal that excess substrate acts as a fluidizing cryosolvent to enable native enzyme reactivity at cryogenic temperatures.

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Year:  2021        PMID: 34241057      PMCID: PMC8096458          DOI: 10.1063/5.0040341

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  26 in total

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2.  Protein and water dynamics in bovine serum albumin-water mixtures over wide ranges of composition.

Authors:  A Panagopoulou; A Kyritsis; N Shinyashiki; P Pissis
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Authors:  S Capaccioli; K L Ngai; N Shinyashiki
Journal:  J Phys Chem B       Date:  2007-06-22       Impact factor: 2.991

4.  A unified model of protein dynamics.

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Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-27       Impact factor: 11.205

5.  ESR evidence for 2 coexisting liquid phases in deeply supercooled bulk water.

Authors:  D Banerjee; S N Bhat; S V Bhat; D Leporini
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-25       Impact factor: 11.205

6.  Glass transitions in aqueous solutions of protein (bovine serum albumin).

Authors:  Naoki Shinyashiki; Wataru Yamamoto; Ayame Yokoyama; Takeo Yoshinari; Shin Yagihara; Rio Kita; K L Ngai; Simone Capaccioli
Journal:  J Phys Chem B       Date:  2009-10-29       Impact factor: 2.991

Review 7.  Introduction to the Thematic Minireview Series: Host-microbiome metabolic interplay.

Authors:  Ruma Banerjee
Journal:  J Biol Chem       Date:  2017-04-07       Impact factor: 5.157

8.  Ethanolamine utilization in Salmonella typhimurium.

Authors:  D M Roof; J R Roth
Journal:  J Bacteriol       Date:  1988-09       Impact factor: 3.490

9.  Deuterium Kinetic Isotope Effects Resolve Low-Temperature Substrate Radical Reaction Pathways and Steps in B12-Dependent Ethanolamine Ammonia-Lyase.

Authors:  Meghan Kohne; Wei Li; Chen Zhu; Kurt Warncke
Journal:  Biochemistry       Date:  2019-08-16       Impact factor: 3.162

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  2 in total

1.  Resolution and characterization of contributions of select protein and coupled solvent configurational fluctuations to radical rearrangement catalysis in coenzyme B12-dependent ethanolamine ammonia-lyase.

Authors:  Meghan Kohne; Wei Li; Alina Ionescu; Chen Zhu; Kurt Warncke
Journal:  Methods Enzymol       Date:  2022-01-29       Impact factor: 1.682

2.  Resolution and characterization of confinement- and temperature-dependent dynamics in solvent phases that surround proteins in frozen aqueous solution by using spin-probe EPR spectroscopy.

Authors:  Wei Li; Benjamen Nforneh; Katie L Whitcomb; Kurt Warncke
Journal:  Methods Enzymol       Date:  2022-03-21       Impact factor: 1.682

  2 in total

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