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Literature DB >> 22106382

Draft genome sequence of the Coccolithovirus Emiliania huxleyi virus 203.

Jozef I Nissimov¹, Charlotte A Worthy, Paul Rooks, Johnathan A Napier, Susan A Kimmance, Matthew R Henn, Hiroyuki Ogata, Michael J Allen.

Abstract

The Coccolithoviridae are a recently discovered group of viruses that infect the marine coccolithophorid Emiliania huxleyi. Emiliania huxleyi virus 203 (EhV-203) has a 160- to 180-nm-diameter icosahedral structure and a genome of approximately 400 kbp, consisting of 464 coding sequences (CDSs). Here we describe the genomic features of EhV-203 together with a draft genome sequence and its annotation, highlighting the homology and heterogeneity of this genome in comparison with the EhV-86 reference genome.

Entities: Chemical

Mesh：

Substances：
DNA, Viral

Year: 2011 PMID： 22106382 PMCID： PMC3233127 DOI： 10.1128/JVI.06440-11

Source DB: PubMed Journal: J Virol ISSN： 0022-538X Impact factor: 5.103

9 in total

1. Use of microarrays to assess viral diversity: from genotype to phenotype.

Authors: Michael J Allen; Joaquin Martinez-Martinez; Declan C Schroeder; Paul J Somerfield; William H Wilson
Journal: Environ Microbiol Date: 2007-04 Impact factor: 5.491

2. Horizontal gene transfer of an entire metabolic pathway between a eukaryotic alga and its DNA virus.

Authors: Adam Monier; António Pagarete; Colomban de Vargas; Michael J Allen; Betsy Read; Jean-Michel Claverie; Hiroyuki Ogata
Journal: Genome Res Date: 2009-05-18 Impact factor: 9.043

3. IMG ER: a system for microbial genome annotation expert review and curation.

Authors: Victor M Markowitz; Konstantinos Mavromatis; Natalia N Ivanova; I-Min A Chen; Ken Chu; Nikos C Kyrpides
Journal: Bioinformatics Date: 2009-06-27 Impact factor: 6.937

4. Complete genome sequence and lytic phase transcription profile of a Coccolithovirus.

Authors: William H Wilson; Declan C Schroeder; Michael J Allen; Matthew T G Holden; Julian Parkhill; Bart G Barrell; Carol Churcher; Nancy Hamlin; Karen Mungall; Halina Norbertczak; Michael A Quail; Claire Price; Ester Rabbinowitsch; Danielle Walker; Marie Craigon; Douglas Roy; Peter Ghazal
Journal: Science Date: 2005-08-12 Impact factor: 47.728

5. Expression of a novel marine viral single-chain serine palmitoyltransferase and construction of yeast and mammalian single-chain chimera.

Authors: Gongshe Han; Kenneth Gable; Lianying Yan; Michael J Allen; William H Wilson; Prasun Moitra; Jeffrey M Harmon; Teresa M Dunn
Journal: J Biol Chem Date: 2006-11-06 Impact factor: 5.157

6. Virus succession observed during an Emiliania huxleyi bloom.

Authors: Declan C Schroeder; Joanne Oke; Matthew Hall; Gillian Malin; William H Wilson
Journal: Appl Environ Microbiol Date: 2003-05 Impact factor: 4.792

Review 7. The Phycodnaviridae: the story of how tiny giants rule the world.

Authors: W H Wilson; J L Van Etten; M J Allen
Journal: Curr Top Microbiol Immunol Date: 2009 Impact factor: 4.291

8. Analysis of high-throughput sequencing and annotation strategies for phage genomes.

Authors: Matthew R Henn; Matthew B Sullivan; Nicole Stange-Thomann; Marcia S Osburne; Aaron M Berlin; Libusha Kelly; Chandri Yandava; Chinnappa Kodira; Qiandong Zeng; Michael Weiand; Todd Sparrow; Sakina Saif; Georgia Giannoukos; Sarah K Young; Chad Nusbaum; Bruce W Birren; Sallie W Chisholm
Journal: PLoS One Date: 2010-02-05 Impact factor: 3.240

9. Viral trans-dominant manipulation of algal sphingolipids.

Authors: Louise V Michaelson; Teresa M Dunn; Johnathan A Napier
Journal: Trends Plant Sci Date: 2010-10-08 Impact factor: 18.313

9 in total

5 in total

Draft genome sequence of the Coccolithovirus Emiliania huxleyi virus 203.

1. Use of microarrays to assess viral diversity: from genotype to phenotype.

2. Horizontal gene transfer of an entire metabolic pathway between a eukaryotic alga and its DNA virus.

3. IMG ER: a system for microbial genome annotation expert review and curation.

4. Complete genome sequence and lytic phase transcription profile of a Coccolithovirus.

5. Expression of a novel marine viral single-chain serine palmitoyltransferase and construction of yeast and mammalian single-chain chimera.

6. Virus succession observed during an Emiliania huxleyi bloom.

Review 7. The Phycodnaviridae: the story of how tiny giants rule the world.

8. Analysis of high-throughput sequencing and annotation strategies for phage genomes.

9. Viral trans-dominant manipulation of algal sphingolipids.

1. Draft genome sequence of four coccolithoviruses: Emiliania huxleyi virus EhV-88, EhV-201, EhV-207, and EhV-208.

2. Functional inferences of environmental coccolithovirus biodiversity.

3. Draft genome sequence of the coccolithovirus Emiliania huxleyi virus 202.

4. Coccolithoviruses: A Review of Cross-Kingdom Genomic Thievery and Metabolic Thuggery.

5. Emerging Interaction Patterns in the Emiliania huxleyi-EhV System.