Literature DB >> 22328700

Draft genome sequence of four coccolithoviruses: Emiliania huxleyi virus EhV-88, EhV-201, EhV-207, and EhV-208.

Jozef I Nissimov1, Charlotte A Worthy, Paul Rooks, Johnathan A Napier, Susan A Kimmance, Matthew R Henn, Hiroyuki Ogata, Michael J Allen.   

Abstract

The Coccolithoviridae are a group of viruses which infect the marine coccolithophorid microalga Emiliania huxleyi. The Emiliania huxleyi viruses (known as EhVs) described herein have 160- to 180-nm diameter icosahedral structures, have genomes of approximately 400 kbp, and consist of more than 450 predicted coding sequences (CDSs). Here, we describe the genomic features of four newly sequenced coccolithoviruses (EhV-88, EhV-201, EhV-207, and EhV-208) together with their draft genome sequences and their annotations, highlighting the homology and heterogeneity of these genomes to the EhV-86 model reference genome.

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Year:  2012        PMID： 22328700      PMCID： PMC3302265          DOI： 10.1128/JVI.07046-11

Source DB:  PubMed          Journal:  J Virol        ISSN： 0022-538X            Impact factor:   5.103


  8 in total

1.  Use of microarrays to assess viral diversity: from genotype to phenotype.

Authors:  Michael J Allen; Joaquin Martinez-Martinez; Declan C Schroeder; Paul J Somerfield; William H Wilson
Journal:  Environ Microbiol       Date:  2007-04       Impact factor: 5.491

2.  IMG ER: a system for microbial genome annotation expert review and curation.

Authors:  Victor M Markowitz; Konstantinos Mavromatis; Natalia N Ivanova; I-Min A Chen; Ken Chu; Nikos C Kyrpides
Journal:  Bioinformatics       Date:  2009-06-27       Impact factor: 6.937

3.  Complete genome sequence and lytic phase transcription profile of a Coccolithovirus.

Authors:  William H Wilson; Declan C Schroeder; Michael J Allen; Matthew T G Holden; Julian Parkhill; Bart G Barrell; Carol Churcher; Nancy Hamlin; Karen Mungall; Halina Norbertczak; Michael A Quail; Claire Price; Ester Rabbinowitsch; Danielle Walker; Marie Craigon; Douglas Roy; Peter Ghazal
Journal:  Science       Date:  2005-08-12       Impact factor: 47.728

4.  Virus succession observed during an Emiliania huxleyi bloom.

Authors:  Declan C Schroeder; Joanne Oke; Matthew Hall; Gillian Malin; William H Wilson
Journal:  Appl Environ Microbiol       Date:  2003-05       Impact factor: 4.792

Review 5.  The Phycodnaviridae: the story of how tiny giants rule the world.

Authors:  W H Wilson; J L Van Etten; M J Allen
Journal:  Curr Top Microbiol Immunol       Date:  2009       Impact factor: 4.291

6.  Analysis of high-throughput sequencing and annotation strategies for phage genomes.

Authors:  Matthew R Henn; Matthew B Sullivan; Nicole Stange-Thomann; Marcia S Osburne; Aaron M Berlin; Libusha Kelly; Chandri Yandava; Chinnappa Kodira; Qiandong Zeng; Michael Weiand; Todd Sparrow; Sakina Saif; Georgia Giannoukos; Sarah K Young; Chad Nusbaum; Bruce W Birren; Sallie W Chisholm
Journal:  PLoS One       Date:  2010-02-05       Impact factor: 3.240

7.  Draft genome sequence of the Coccolithovirus Emiliania huxleyi virus 203.

Authors:  Jozef I Nissimov; Charlotte A Worthy; Paul Rooks; Johnathan A Napier; Susan A Kimmance; Matthew R Henn; Hiroyuki Ogata; Michael J Allen
Journal:  J Virol       Date:  2011-12       Impact factor: 5.103

8.  Draft genome sequence of the coccolithovirus EhV-84.

Authors:  Jozef I Nissimov; Charlotte A Worthy; Paul Rooks; Johnathan A Napier; Susan A Kimmance; Matthew R Henn; Hiroyuki Ogata; Michael J Allen
Journal:  Stand Genomic Sci       Date:  2011-09-23
  8 in total
  5 in total

1.  Functional inferences of environmental coccolithovirus biodiversity.

Authors:  Jozef I Nissimov; Mark Jones; Johnathan A Napier; Colin B Munn; Susan A Kimmance; Michael J Allen
Journal:  Virol Sin       Date:  2013-08-28       Impact factor: 4.327

2.  Rewiring Host Lipid Metabolism by Large Viruses Determines the Fate of Emiliania huxleyi, a Bloom-Forming Alga in the Ocean.

Authors:  Shilo Rosenwasser; Michaela A Mausz; Daniella Schatz; Uri Sheyn; Sergey Malitsky; Asaph Aharoni; Eyal Weinstock; Oren Tzfadia; Shifra Ben-Dor; Ester Feldmesser; Georg Pohnert; Assaf Vardi
Journal:  Plant Cell       Date:  2014-06-10       Impact factor: 11.277

3.  Coccolithoviruses: A Review of Cross-Kingdom Genomic Thievery and Metabolic Thuggery.

Authors:  Jozef I Nissimov; António Pagarete; Fangrui Ma; Sean Cody; David D Dunigan; Susan A Kimmance; Michael J Allen
Journal:  Viruses       Date:  2017-03-18       Impact factor: 5.048

4.  Emerging Interaction Patterns in the Emiliania huxleyi-EhV System.

Authors:  Eliana Ruiz; Monique Oosterhof; Ruth-Anne Sandaa; Aud Larsen; António Pagarete
Journal:  Viruses       Date:  2017-03-22       Impact factor: 5.048

5.  Proton-transporting heliorhodopsins from marine giant viruses.

Authors:  Shoko Hososhima; Ritsu Mizutori; Rei Abe-Yoshizumi; Andrey Rozenberg; Shunta Shigemura; Alina Pushkarev; Masae Konno; Kota Katayama; Keiichi Inoue; Satoshi P Tsunoda; Oded Béjà; Hideki Kandori
Journal:  Elife       Date:  2022-09-06       Impact factor: 8.713
  5 in total

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