Literature DB >> 22102018

Structure of New Delhi metallo-β-lactamase 1 (NDM-1).

Victoria L Green1, Anil Verma, Raymond J Owens, Simon E V Phillips, Stephen B Carr.   

Abstract

Antibiotic resistance in bacterial pathogens poses a serious threat to human health and the metallo-β-lactamase (MBL) enzymes are responsible for much of this resistance. The recently identified New Delhi MBL 1 (NDM-1) is a novel member of this family that is capable of hydrolysing a wide variety of clinically important antibiotics. Here, the crystal structure of NDM-1 from Klebsiella pneumoniae is reported and its structure and active site are discussed in the context of other recently deposited coordinates of NDM-1.
© 2011 International Union of Crystallography. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 22102018      PMCID: PMC3212353          DOI: 10.1107/S1744309111029654

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  23 in total

1.  Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7.

Authors:  Gerrit Langer; Serge X Cohen; Victor S Lamzin; Anastassis Perrakis
Journal:  Nat Protoc       Date:  2008       Impact factor: 13.491

2.  A structural view of the antibiotic degradation enzyme NDM-1 from a superbug.

Authors:  Yu Guo; Jing Wang; Guojun Niu; Wenqing Shui; Yuna Sun; Honggang Zhou; Yaozhou Zhang; Cheng Yang; Zhiyong Lou; Zihe Rao
Journal:  Protein Cell       Date:  2011-06-02       Impact factor: 14.870

3.  Crystal structure of NDM-1 reveals a common β-lactam hydrolysis mechanism.

Authors:  HongMin Zhang; Quan Hao
Journal:  FASEB J       Date:  2011-04-20       Impact factor: 5.191

4.  Zn(II) dependence of the Aeromonas hydrophila AE036 metallo-beta-lactamase activity and stability.

Authors:  M Hernandez Valladares; A Felici; G Weber; H W Adolph; M Zeppezauer; G M Rossolini; G Amicosante; J M Frère; M Galleni
Journal:  Biochemistry       Date:  1997-09-23       Impact factor: 3.162

5.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

6.  Motion of the zinc ions in catalysis by a dizinc metallo-beta-lactamase.

Authors:  Robert M Breece; Zhenxin Hu; Brian Bennett; Michael W Crowder; David L Tierney
Journal:  J Am Chem Soc       Date:  2009-08-26       Impact factor: 15.419

Review 7.  Three decades of beta-lactamase inhibitors.

Authors:  Sarah M Drawz; Robert A Bonomo
Journal:  Clin Microbiol Rev       Date:  2010-01       Impact factor: 26.132

8.  Cloning and sequencing of the metallothioprotein beta-lactamase II gene of Bacillus cereus 569/H in Escherichia coli.

Authors:  M Hussain; A Carlino; M J Madonna; J O Lampen
Journal:  J Bacteriol       Date:  1985-10       Impact factor: 3.490

9.  REFMAC5 for the refinement of macromolecular crystal structures.

Authors:  Garib N Murshudov; Pavol Skubák; Andrey A Lebedev; Navraj S Pannu; Roberto A Steiner; Robert A Nicholls; Martyn D Winn; Fei Long; Alexei A Vagin
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

10.  Crystallographic refinement of ligand complexes.

Authors:  Gerard J Kleywegt
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2006-12-13
View more
  31 in total

1.  Role of Non-Active-Site Residue Trp-93 in the Function and Stability of New Delhi Metallo-β-Lactamase 1.

Authors:  Asad U Khan; M Tabish Rehman
Journal:  Antimicrob Agents Chemother       Date:  2015-11-02       Impact factor: 5.191

2.  A novel New Delhi metallo-β-lactamase variant, NDM-14, isolated in a Chinese Hospital possesses increased enzymatic activity against carbapenems.

Authors:  Dayang Zou; Yong Huang; Xiangna Zhao; Wei Liu; Derong Dong; Huan Li; Xuesong Wang; Simo Huang; Xiao Wei; Xiabei Yan; Zhan Yang; Yigang Tong; Liuyu Huang; Jing Yuan
Journal:  Antimicrob Agents Chemother       Date:  2015-02-02       Impact factor: 5.191

3.  Biochemical analysis of metallo-β-lactamase NDM-3 from a multidrug-resistant Escherichia coli strain isolated in Japan.

Authors:  Tatsuya Tada; Tohru Miyoshi-Akiyama; Kayo Shimada; Teruo Kirikae
Journal:  Antimicrob Agents Chemother       Date:  2014-03-31       Impact factor: 5.191

Review 4.  Resistance to antibiotics targeted to the bacterial cell wall.

Authors:  I Nikolaidis; S Favini-Stabile; A Dessen
Journal:  Protein Sci       Date:  2014-01-17       Impact factor: 6.725

5.  NDM-8 metallo-β-lactamase in a multidrug-resistant Escherichia coli strain isolated in Nepal.

Authors:  Tatsuya Tada; Tohru Miyoshi-Akiyama; Rajan K Dahal; Manoj K Sah; Hiroshi Ohara; Teruo Kirikae; Bharat M Pokhrel
Journal:  Antimicrob Agents Chemother       Date:  2013-03-04       Impact factor: 5.191

6.  NDM-12, a novel New Delhi metallo-β-lactamase variant from a carbapenem-resistant Escherichia coli clinical isolate in Nepal.

Authors:  Tatsuya Tada; Basudha Shrestha; Tohru Miyoshi-Akiyama; Kayo Shimada; Hiroshi Ohara; Teruo Kirikae; Bharat M Pokhrel
Journal:  Antimicrob Agents Chemother       Date:  2014-08-04       Impact factor: 5.191

7.  Crystal structures reveal metal-binding plasticity at the metallo-β-lactamase active site of PqqB from Pseudomonas putida.

Authors:  Xiongying Tu; John A Latham; Valerie J Klema; Robert L Evans; Chao Li; Judith P Klinman; Carrie M Wilmot
Journal:  J Biol Inorg Chem       Date:  2017-08-19       Impact factor: 3.358

8.  Molecular Characterization and Computational Modelling of New Delhi Metallo-β-Lactamase-5 from an Escherichia coli Isolate (KOEC3) of Bovine Origin.

Authors:  D Purkait; A Ahuja; U Bhattacharjee; A Singha; K Rhetso; T K Dey; S Das; R K Sanjukta; K Puro; I Shakuntala; A Sen; A Banerjee; I Sharma; R S Bhatta; M Mawlong; C Guha; N R Pradhan; S Ghatak
Journal:  Indian J Microbiol       Date:  2016-02-11       Impact factor: 2.461

9.  Pterostilbene restores carbapenem susceptibility in New Delhi metallo-β-lactamase-producing isolates by inhibiting the activity of New Delhi metallo-β-lactamases.

Authors:  Shui Liu; Jian Zhang; Yonglin Zhou; Naiyu Hu; Jiyun Li; Yang Wang; Xiaodi Niu; Xuming Deng; Jianfeng Wang
Journal:  Br J Pharmacol       Date:  2019-12-09       Impact factor: 8.739

10.  A quantum mechanics/molecular mechanics study on the hydrolysis mechanism of New Delhi metallo-β-lactamase-1.

Authors:  Kongkai Zhu; Junyan Lu; Zhongjie Liang; Xiangqian Kong; Fei Ye; Lu Jin; Heji Geng; Yong Chen; Mingyue Zheng; Hualiang Jiang; Jun-Qian Li; Cheng Luo
Journal:  J Comput Aided Mol Des       Date:  2013-03-02       Impact factor: 3.686

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.