Literature DB >> 22091160

2,2'-(Propane-1,3-di-yl)bis-(2H-indazole).

Saúl Ovalle, Sylvain Bernès, Nancy Pérez Rodríguez, Perla Elizondo Martínez.   

Abstract

The title mol-ecule, C(17)H(16)N(4), is a bis-indazole crystallized in the rare 2H-tautomeric form. Indazole heterocycles are connected by a propane C(3) chain, and the mol-ecule is placed on a general position, in contrast to the analogous compound with a central C(2) ethane bridge, which was previously found to be placed on an inversion center in the same space group. In the title mol-ecule, indazole rings make a dihedral angle of 60.11 (7)°, and the bridging alkyl chain displays a trans conformation, resulting in a W-shaped mol-ecule. In the crystal, mol-ecules inter-act weakly through π-π contacts between inversion-related pyrazole rings, with a centroid-centroid separation of 3.746 (2) Å.

Entities:  

Year:  2011        PMID: 22091160      PMCID: PMC3213583          DOI: 10.1107/S1600536811029011

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of 2H-indazoles, see: Wu et al. (2010 ▶). For studies of 1H←→2H tautomerism in indazoles, see: Alkorta & Elguero (2005 ▶); Yu et al. (2006 ▶). For 2H-indazole X-ray structures, see: Saczewski et al. (2001 ▶); Rodríguez de Barbarín et al. (2006 ▶); Ramos Silva et al. (2008 ▶); Hurtado et al. (2009 ▶); Zhou et al. (2010 ▶); Long et al. (2011 ▶).

Experimental

Crystal data

C17H16N4 M = 276.34 Orthorhombic, a = 8.182 (2) Å b = 10.549 (4) Å c = 34.179 (9) Å V = 2950.1 (16) Å3 Z = 8 Mo Kα radiation μ = 0.08 mm−1 T = 298 K 0.60 × 0.40 × 0.18 mm

Data collection

Siemens P4 diffractometer 8195 measured reflections 2621 independent reflections 1607 reflections with I > 2σ(I) R int = 0.042 3 standard reflections every 97 reflections intensity decay: 1.5%

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.162 S = 1.10 2621 reflections 191 parameters H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.21 e Å−3 Data collection: XSCANS (Siemens, 1996 ▶); cell refinement: XSCANS; data reduction: XSCANS; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811029011/aa2015sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811029011/aa2015Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811029011/aa2015Isup3.mol Supplementary material file. DOI: 10.1107/S1600536811029011/aa2015Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H16N4Dx = 1.244 Mg m3
Mr = 276.34Melting point: 389 K
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 77 reflections
a = 8.182 (2) Åθ = 4.6–12.4°
b = 10.549 (4) ŵ = 0.08 mm1
c = 34.179 (9) ÅT = 298 K
V = 2950.1 (16) Å3Prism, yellow
Z = 80.60 × 0.40 × 0.18 mm
F(000) = 1168
Siemens P4 diffractometerRint = 0.042
Radiation source: fine-focus sealed tubeθmax = 25.1°, θmin = 2.4°
graphiteh = −9→8
ω scansk = −12→12
8195 measured reflectionsl = −40→40
2621 independent reflections3 standard reflections every 97 reflections
1607 reflections with I > 2σ(I) intensity decay: 1.5%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.049H-atom parameters constrained
wR(F2) = 0.162w = 1/[σ2(Fo2) + (0.0659P)2 + 0.9616P] where P = (Fo2 + 2Fc2)/3
S = 1.10(Δ/σ)max < 0.001
2621 reflectionsΔρmax = 0.20 e Å3
191 parametersΔρmin = −0.21 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 constraintsExtinction coefficient: 0.0159 (17)
Primary atom site location: structure-invariant direct methods
xyzUiso*/Ueq
N10.3628 (3)0.67210 (17)0.33910 (5)0.0640 (6)
N20.2422 (2)0.75293 (17)0.34924 (5)0.0563 (5)
C10.2608 (3)0.8690 (2)0.33476 (6)0.0622 (7)
H1A0.19140.93780.33850.075*
C20.4896 (4)0.9559 (3)0.29004 (7)0.0773 (8)
H2A0.45291.03900.28760.093*
C30.6261 (5)0.9172 (3)0.27178 (8)0.0902 (10)
H3A0.68280.97440.25610.108*
C40.6856 (4)0.7935 (4)0.27562 (9)0.0986 (11)
H4A0.78150.77080.26280.118*
C50.6062 (4)0.7056 (3)0.29769 (8)0.0847 (9)
H5A0.64630.62350.30020.102*
C60.4614 (3)0.7431 (2)0.31655 (6)0.0610 (7)
C70.4032 (3)0.8675 (2)0.31308 (6)0.0604 (7)
C80.1158 (3)0.7097 (2)0.37586 (6)0.0639 (7)
H8A0.08220.62470.36860.077*
H8B0.02140.76490.37370.077*
C90.1757 (3)0.7094 (2)0.41760 (7)0.0646 (7)
H9A0.27370.65820.41950.078*
H9B0.20310.79520.42540.078*
C100.0474 (3)0.6575 (3)0.44453 (6)0.0671 (7)
H10B−0.04580.71430.44470.080*
H10C0.01090.57600.43480.080*
N110.2399 (2)0.56892 (18)0.49101 (5)0.0611 (6)
N120.1075 (2)0.64232 (18)0.48438 (5)0.0571 (5)
C110.0399 (3)0.6887 (2)0.51674 (7)0.0615 (7)
H11B−0.05160.74090.51810.074*
C120.1239 (4)0.6545 (2)0.58912 (7)0.0696 (7)
H12B0.04440.70400.60120.083*
C130.2351 (3)0.5902 (3)0.61062 (7)0.0699 (7)
H13B0.23060.59470.63780.084*
C140.3567 (3)0.5170 (2)0.59287 (8)0.0707 (7)
H14C0.43080.47370.60860.085*
C150.3702 (3)0.5070 (2)0.55328 (7)0.0683 (7)
H15B0.45380.46030.54180.082*
C160.2530 (3)0.5701 (2)0.53037 (6)0.0533 (6)
C170.1312 (3)0.6448 (2)0.54797 (7)0.0555 (6)
U11U22U33U12U13U23
N10.0772 (15)0.0555 (11)0.0593 (11)0.0036 (11)0.0102 (11)0.0011 (9)
N20.0647 (13)0.0543 (10)0.0499 (10)0.0009 (10)0.0040 (10)0.0007 (8)
C10.0780 (18)0.0525 (13)0.0560 (13)0.0050 (12)−0.0062 (14)0.0031 (10)
C20.107 (2)0.0695 (16)0.0558 (14)−0.0202 (17)−0.0037 (16)0.0056 (12)
C30.113 (3)0.095 (2)0.0633 (17)−0.036 (2)0.0138 (18)0.0004 (15)
C40.100 (3)0.118 (3)0.0780 (19)−0.011 (2)0.0320 (18)−0.0046 (19)
C50.095 (2)0.0832 (19)0.0754 (17)0.0069 (18)0.0252 (17)−0.0047 (15)
C60.0760 (17)0.0596 (14)0.0474 (12)−0.0041 (13)0.0039 (12)−0.0038 (10)
C70.0796 (18)0.0570 (13)0.0447 (12)−0.0064 (13)−0.0031 (12)0.0003 (10)
C80.0633 (16)0.0713 (15)0.0572 (13)−0.0018 (13)0.0053 (12)0.0041 (11)
C90.0662 (17)0.0707 (15)0.0570 (13)−0.0090 (13)0.0045 (12)0.0051 (12)
C100.0665 (17)0.0764 (16)0.0583 (14)−0.0086 (14)0.0020 (13)0.0044 (12)
N110.0601 (13)0.0607 (12)0.0626 (11)0.0070 (10)0.0088 (10)0.0013 (9)
N120.0542 (12)0.0595 (11)0.0576 (11)0.0007 (10)0.0071 (10)0.0047 (9)
C110.0608 (16)0.0610 (14)0.0628 (15)0.0081 (12)0.0103 (12)0.0004 (11)
C120.0737 (18)0.0719 (16)0.0631 (15)0.0076 (15)0.0085 (14)−0.0050 (12)
C130.0792 (19)0.0731 (16)0.0574 (13)0.0005 (16)−0.0023 (14)0.0011 (12)
C140.0732 (19)0.0667 (15)0.0724 (16)0.0059 (14)−0.0063 (14)0.0087 (13)
C150.0687 (17)0.0639 (14)0.0724 (16)0.0098 (13)0.0054 (14)0.0012 (12)
C160.0535 (14)0.0470 (11)0.0593 (13)−0.0014 (11)0.0061 (11)0.0023 (10)
C170.0570 (15)0.0505 (12)0.0590 (13)0.0018 (11)0.0072 (12)0.0015 (10)
N1—C61.343 (3)C9—H9A0.9700
N1—N21.350 (3)C9—H9B0.9700
N2—C11.329 (3)C10—N121.457 (3)
N2—C81.451 (3)C10—H10B0.9700
C1—C71.381 (4)C10—H10C0.9700
C1—H1A0.9300N11—C161.350 (3)
C2—C31.343 (4)N11—N121.351 (3)
C2—C71.410 (3)N12—C111.330 (3)
C2—H2A0.9300C11—C171.383 (3)
C3—C41.400 (5)C11—H11B0.9300
C3—H3A0.9300C12—C131.353 (4)
C4—C51.360 (4)C12—C171.411 (3)
C4—H4A0.9300C12—H12B0.9300
C5—C61.406 (4)C13—C141.398 (4)
C5—H5A0.9300C13—H13B0.9300
C6—C71.401 (3)C14—C151.362 (4)
C8—C91.509 (3)C14—H14C0.9300
C8—H8A0.9700C15—C161.405 (3)
C8—H8B0.9700C15—H15B0.9300
C9—C101.499 (3)C16—C171.406 (3)
C6—N1—N2103.55 (18)C10—C9—H9B109.5
C1—N2—N1113.7 (2)C8—C9—H9B109.5
C1—N2—C8127.2 (2)H9A—C9—H9B108.1
N1—N2—C8118.95 (18)N12—C10—C9112.2 (2)
N2—C1—C7106.6 (2)N12—C10—H10B109.2
N2—C1—H1A126.7C9—C10—H10B109.2
C7—C1—H1A126.7N12—C10—H10C109.2
C3—C2—C7118.4 (3)C9—C10—H10C109.2
C3—C2—H2A120.8H10B—C10—H10C107.9
C7—C2—H2A120.8C16—N11—N12103.05 (18)
C2—C3—C4121.9 (3)C11—N12—N11113.89 (19)
C2—C3—H3A119.0C11—N12—C10126.6 (2)
C4—C3—H3A119.0N11—N12—C10119.37 (19)
C5—C4—C3121.5 (3)N12—C11—C17107.1 (2)
C5—C4—H4A119.3N12—C11—H11B126.5
C3—C4—H4A119.3C17—C11—H11B126.5
C4—C5—C6117.7 (3)C13—C12—C17118.5 (2)
C4—C5—H5A121.1C13—C12—H12B120.8
C6—C5—H5A121.1C17—C12—H12B120.8
N1—C6—C7111.5 (2)C12—C13—C14121.4 (2)
N1—C6—C5127.7 (2)C12—C13—H13B119.3
C7—C6—C5120.7 (2)C14—C13—H13B119.3
C1—C7—C6104.6 (2)C15—C14—C13122.1 (2)
C1—C7—C2135.6 (3)C15—C14—H14C118.9
C6—C7—C2119.8 (3)C13—C14—H14C118.9
N2—C8—C9111.3 (2)C14—C15—C16117.5 (2)
N2—C8—H8A109.4C14—C15—H15B121.2
C9—C8—H8A109.4C16—C15—H15B121.2
N2—C8—H8B109.4N11—C16—C15127.3 (2)
C9—C8—H8B109.4N11—C16—C17112.0 (2)
H8A—C8—H8B108.0C15—C16—C17120.7 (2)
C10—C9—C8110.7 (2)C11—C17—C16103.9 (2)
C10—C9—H9A109.5C11—C17—C12136.2 (2)
C8—C9—H9A109.5C16—C17—C12119.8 (2)
C6—N1—N2—C1−0.6 (2)C8—C9—C10—N12173.5 (2)
C6—N1—N2—C8−176.64 (19)C16—N11—N12—C110.5 (3)
N1—N2—C1—C70.3 (3)C16—N11—N12—C10−176.1 (2)
C8—N2—C1—C7176.0 (2)C9—C10—N12—C11126.4 (3)
C7—C2—C3—C4−1.2 (4)C9—C10—N12—N11−57.4 (3)
C2—C3—C4—C51.0 (5)N11—N12—C11—C170.0 (3)
C3—C4—C5—C60.2 (5)C10—N12—C11—C17176.3 (2)
N2—N1—C6—C70.6 (3)C17—C12—C13—C141.0 (4)
N2—N1—C6—C5−179.3 (2)C12—C13—C14—C150.3 (4)
C4—C5—C6—N1178.9 (3)C13—C14—C15—C16−2.1 (4)
C4—C5—C6—C7−1.0 (4)N12—N11—C16—C15179.2 (2)
N2—C1—C7—C60.1 (2)N12—N11—C16—C17−0.8 (2)
N2—C1—C7—C2178.5 (3)C14—C15—C16—N11−177.3 (2)
N1—C6—C7—C1−0.5 (3)C14—C15—C16—C172.7 (4)
C5—C6—C7—C1179.5 (2)N12—C11—C17—C16−0.5 (3)
N1—C6—C7—C2−179.2 (2)N12—C11—C17—C12−177.6 (3)
C5—C6—C7—C20.8 (4)N11—C16—C17—C110.8 (3)
C3—C2—C7—C1−177.9 (3)C15—C16—C17—C11−179.2 (2)
C3—C2—C7—C60.4 (4)N11—C16—C17—C12178.5 (2)
C1—N2—C8—C9−97.6 (3)C15—C16—C17—C12−1.5 (3)
N1—N2—C8—C977.9 (3)C13—C12—C17—C11176.4 (3)
N2—C8—C9—C10−176.7 (2)C13—C12—C17—C16−0.4 (4)
  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Carbon disulfide promoted reactions of 2-chloro-4,5-dihydro-imidazole with some N-nucleophiles.

Authors:  F Saczewski; J Saczewski; M Gdaniec
Journal:  Chem Pharm Bull (Tokyo)       Date:  2001-09       Impact factor: 1.645

3.  Synthesis of 2H-indazoles by the [3 + 2] cycloaddition of arynes and sydnones.

Authors:  Chunrui Wu; Yuesi Fang; Richard C Larock; Feng Shi
Journal:  Org Lett       Date:  2010-05-21       Impact factor: 6.005

4.  1H-indazole and 2H-indazole derivatives of androsta-5,16-dien-3beta-ol.

Authors:  Manuela Ramos Silva; Vânia M Moreira; Cláudia Cardoso; Ana Matos Beja; Jorge A R Salvador
Journal:  Acta Crystallogr C       Date:  2008-03-15       Impact factor: 1.172

5.  2-(4-Methyl-phen-yl)-2H-indazole.

Authors:  Xingqin Zhou; Xiaofen Qin; Jiankang Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-09

6.  2-Methyl-6-nitro-2H-indazole.

Authors:  Li Long; Bing-Ni Liu; Mo Liu; Deng-Ke Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-28
  6 in total
  1 in total

1.  Tris[2-(2H-indazol-2-yl)eth-yl]amine.

Authors:  Saúl Ovalle; Perla Elizondo Martínez; Nancy Pérez Rodríguez; Sylvain Bernès; Marcos Flores-Alamo
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-26
  1 in total

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