Literature DB >> 22719639

Tris[2-(2H-indazol-2-yl)eth-yl]amine.

Saúl Ovalle, Perla Elizondo Martínez, Nancy Pérez Rodríguez, Sylvain Bernès, Marcos Flores-Alamo.   

Abstract

The title tertiary amine, C(27)H(27)N(7), a potential tripodal ligand for coordination chemistry, crystallizes with the central N atom located on a threefold axis of a trigonal cell. The gauche conformation of the N(amime)-CH(2)-CH(2)-N(indazole) chain [torsion angle = -64.2 (2)°] places the pendant 2H-indazole heterocycles surrounding the symmetry axis, affording a claw-like shaped mol-ecule. Two symmetry-related indazole planes in the mol-ecule make an acute angle of 60.39 (4)°. The lone pair of the tertiary N atom is located inside the cavity, and should thus be inactive (as a ligand). In the crystal, neither significant π-π nor C-H⋯π inter-actions between molecules are found.

Entities:  

Year:  2012        PMID: 22719639      PMCID: PMC3379441          DOI: 10.1107/S1600536812022027

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the pharmacological properties of indazoles, see: Cerecetto et al. (2005 ▶); Ryu et al. (2001 ▶); Teixeira et al. (2009 ▶). For isomerism in indazoles, see: Teixeira et al. (2006 ▶); Alkorta & Elguero (2005 ▶). For structures of related bis-(2H-indazoles), see: Rodríguez de Barbarín et al. (2006 ▶); Ovalle et al. (2011 ▶). For the structure of the precursor used in the synthesis of the title compound, see: McKee et al. (2006 ▶).

Experimental

Crystal data

C27H27N7 M = 449.56 Trigonal, a = 13.7314 (15) Å c = 22.235 (3) Å V = 3630.8 (8) Å3 Z = 6 Mo Kα radiation μ = 0.08 mm−1 T = 130 K 0.40 × 0.20 × 0.20 mm

Data collection

Oxford Diffraction Xcalibur Atlas Gemini diffractometer Absorption correction: multi-scan [CrysAlis PRO (Oxford Diffraction, 2009 ▶); based on expressions derived by Clark & Reid (1995 ▶)] T min = 0.509, T max = 1.000 2900 measured reflections 1404 independent reflections 852 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.131 S = 0.96 1404 reflections 103 parameters H-atom parameters constrained Δρmax = 0.12 e Å−3 Δρmin = −0.15 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2009 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812022027/lr2063sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812022027/lr2063Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812022027/lr2063Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C27H27N7Dx = 1.234 Mg m3
Mr = 449.56Melting point: 445 K
Trigonal, R3Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -R 3Cell parameters from 1214 reflections
a = 13.7314 (15) Åθ = 3.5–29.5°
c = 22.235 (3) ŵ = 0.08 mm1
V = 3630.8 (8) Å3T = 130 K
Z = 6Plate, orange
F(000) = 14280.40 × 0.20 × 0.20 mm
Oxford Diffraction Xcalibur Atlas Gemini diffractometer1404 independent reflections
Radiation source: Enhance (Mo) X-ray Source852 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.035
Detector resolution: 10.4685 pixels mm-1θmax = 25.3°, θmin = 3.6°
ω scansh = −16→11
Absorption correction: multi-scan [CrysAlis PRO (Oxford Diffraction, 2009); based on expressions derived by Clark & Reid (1995)]k = −11→16
Tmin = 0.509, Tmax = 1.000l = −18→26
2900 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.131H-atom parameters constrained
S = 0.96w = 1/[σ2(Fo2) + (0.0792P)2] where P = (Fo2 + 2Fc2)/3
1404 reflections(Δ/σ)max < 0.001
103 parametersΔρmax = 0.12 e Å3
0 restraintsΔρmin = −0.15 e Å3
0 constraints
xyzUiso*/Ueq
N10.06603 (12)0.53619 (12)0.91972 (8)0.0708 (5)
N20.14166 (12)0.50358 (11)0.93250 (7)0.0667 (5)
N30.33330.66671.01076 (10)0.0624 (7)
C10.19002 (14)0.48969 (15)0.88423 (10)0.0724 (6)
H1A0.24350.46710.88390.087*
C20.16242 (17)0.51736 (19)0.77209 (10)0.0881 (7)
H2A0.21290.49810.75580.106*
C30.1031 (2)0.54814 (19)0.73614 (11)0.0956 (8)
H3A0.11280.55010.69470.115*
C40.0267 (2)0.57740 (17)0.76090 (12)0.0932 (8)
H4A−0.01270.59900.73530.112*
C50.00892 (17)0.57496 (15)0.82125 (12)0.0822 (6)
H5A−0.04230.59380.83690.099*
C60.06970 (13)0.54348 (13)0.85902 (10)0.0625 (5)
C70.14644 (13)0.51492 (14)0.83448 (9)0.0647 (5)
C80.15877 (17)0.48420 (16)0.99499 (9)0.0802 (6)
H8A0.20210.44600.99630.096*
H8B0.08630.43511.01330.096*
C90.21862 (15)0.59058 (16)1.03092 (8)0.0771 (6)
H9A0.17610.62951.02870.093*
H9B0.22060.57141.07270.093*
U11U22U33U12U13U23
N10.0597 (10)0.0648 (9)0.0921 (13)0.0343 (8)0.0033 (8)0.0052 (8)
N20.0544 (9)0.0587 (9)0.0845 (12)0.0265 (7)−0.0009 (8)0.0072 (7)
N30.0626 (10)0.0626 (10)0.0621 (16)0.0313 (5)0.0000.000
C10.0472 (10)0.0709 (12)0.0993 (16)0.0298 (9)0.0048 (10)0.0007 (10)
C20.0654 (13)0.0928 (16)0.0912 (17)0.0283 (11)−0.0011 (11)−0.0138 (12)
C30.0872 (16)0.0865 (16)0.0829 (17)0.0209 (13)−0.0145 (13)−0.0056 (12)
C40.0903 (16)0.0622 (13)0.110 (2)0.0255 (12)−0.0399 (14)−0.0024 (12)
C50.0740 (13)0.0594 (12)0.1138 (19)0.0338 (10)−0.0214 (12)−0.0076 (11)
C60.0464 (10)0.0429 (9)0.0907 (15)0.0168 (8)−0.0048 (9)0.0011 (8)
C70.0417 (9)0.0580 (11)0.0835 (14)0.0168 (8)−0.0031 (9)−0.0060 (9)
C80.0712 (13)0.0675 (13)0.0906 (15)0.0262 (10)−0.0005 (10)0.0155 (10)
C90.0736 (13)0.0812 (14)0.0715 (14)0.0349 (11)0.0126 (10)0.0132 (10)
N1—N21.351 (2)C3—C41.410 (3)
N1—C61.353 (2)C3—H3A0.9300
N2—C11.325 (2)C4—C51.361 (3)
N2—C81.456 (2)C4—H4A0.9300
N3—C9i1.4588 (19)C5—C61.396 (3)
N3—C91.4588 (19)C5—H5A0.9300
N3—C9ii1.4588 (19)C6—C71.405 (2)
C1—C71.382 (3)C8—C91.499 (3)
C1—H1A0.9300C8—H8A0.9700
C2—C31.351 (3)C8—H8B0.9700
C2—C71.402 (3)C9—H9A0.9700
C2—H2A0.9300C9—H9B0.9700
N2—N1—C6103.18 (13)C4—C5—H5A120.9
C1—N2—N1113.64 (15)C6—C5—H5A120.9
C1—N2—C8127.49 (17)N1—C6—C5128.11 (18)
N1—N2—C8118.84 (15)N1—C6—C7111.85 (16)
C9i—N3—C9110.99 (10)C5—C6—C7120.0 (2)
C9i—N3—C9ii110.99 (11)C1—C7—C2135.71 (19)
C9—N3—C9ii110.99 (11)C1—C7—C6103.79 (18)
N2—C1—C7107.54 (17)C2—C7—C6120.51 (18)
N2—C1—H1A126.2N2—C8—C9112.99 (15)
C7—C1—H1A126.2N2—C8—H8A109.0
C3—C2—C7118.8 (2)C9—C8—H8A109.0
C3—C2—H2A120.6N2—C8—H8B109.0
C7—C2—H2A120.6C9—C8—H8B109.0
C2—C3—C4120.6 (2)H8A—C8—H8B107.8
C2—C3—H3A119.7N3—C9—C8113.80 (16)
C4—C3—H3A119.7N3—C9—H9A108.8
C5—C4—C3121.9 (2)C8—C9—H9A108.8
C5—C4—H4A119.1N3—C9—H9B108.8
C3—C4—H4A119.1C8—C9—H9B108.8
C4—C5—C6118.2 (2)H9A—C9—H9B107.7
C6—N1—N2—C1−0.53 (18)N2—C1—C7—C6−0.23 (18)
C6—N1—N2—C8−178.56 (14)C3—C2—C7—C1−179.5 (2)
N1—N2—C1—C70.49 (19)C3—C2—C7—C60.3 (3)
C8—N2—C1—C7178.32 (15)N1—C6—C7—C1−0.10 (18)
C7—C2—C3—C40.1 (3)C5—C6—C7—C1179.66 (15)
C2—C3—C4—C5−0.6 (3)N1—C6—C7—C2−179.97 (14)
C3—C4—C5—C60.7 (3)C5—C6—C7—C2−0.2 (2)
N2—N1—C6—C5−179.36 (16)C1—N2—C8—C9111.2 (2)
N2—N1—C6—C70.37 (18)N1—N2—C8—C9−71.1 (2)
C4—C5—C6—N1179.45 (17)C9i—N3—C9—C8159.04 (17)
C4—C5—C6—C7−0.3 (2)C9ii—N3—C9—C8−77.0 (3)
N2—C1—C7—C2179.62 (19)N2—C8—C9—N3−64.2 (2)
  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  Pharmacological properties of indazole derivatives: recent developments.

Authors:  Hugo Cerecetto; Alejandra Gerpe; Mercedes González; Vicente J Arán; Carmen Ochoa de Ocáriz
Journal:  Mini Rev Med Chem       Date:  2005-10       Impact factor: 3.862

3.  Synthesis and structural characterization of 1- and 2-substituted indazoles: ester and carboxylic acid derivatives.

Authors:  Fátima C Teixeira; Hélène Ramos; Inês F Antunes; M João M Curto; M Teresa Duarte; Isabel Bento
Journal:  Molecules       Date:  2006-11-14       Impact factor: 4.411

4.  2,2'-(Propane-1,3-di-yl)bis-(2H-indazole).

Authors:  Saúl Ovalle; Sylvain Bernès; Nancy Pérez Rodríguez; Perla Elizondo Martínez
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-30
  4 in total

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