Literature DB >> 22091101

1-(2-Hy-droxy-eth-yl)-4-[3-(2-trifluoro-methyl-9H-thioxanthen-9-yl-idene)prop-yl]piperazine-1,4-diium dichloride: the dihydro-chloride salt of flupentixol.

M S Siddegowda, Ray J Butcher, Mehmet Akkurt, H S Yathirajan, B Narayana.   

Abstract

In the title compound, C(23)H(27)F(3)N(2)OS(+)·2Cl(-), the piperazinediium ring adopts a chair conformation. The dihedral angle between the two outer aromatic rings of the 9H-thioxanthene unit is 40.35 (18)°. The F atoms in the trifluoro-methyl group are disordered over two sets of sites with occupancies of 0.803 (6) and 0.197 (6). In the crystal, mol-ecules are connected by N-H⋯Cl, O-H⋯Cl C-H⋯O and C-H⋯Cl hydrogen bonds, forming chains propagating along [001]. There are also C-H⋯π inter-actions present in the crystal structure.

Entities:  

Year:  2011        PMID: 22091101      PMCID: PMC3213522          DOI: 10.1107/S1600536811028182

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the anti­depressant action of flupentixol, see: Robertson & Trimble (1981 ▶). For related structures, see: Post et al. (1975a ▶,b ▶). For puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C23H27F3N2OS22Cl M = 507.44 Monoclinic, a = 34.1750 (17) Å b = 7.1613 (3) Å c = 22.6351 (11) Å β = 115.307 (6)° V = 5008.0 (5) Å3 Z = 8 Cu Kα radiation μ = 3.46 mm−1 T = 295 K 0.43 × 0.34 × 0.21 mm

Data collection

Oxford Diffraction Xcalibur Ruby Gemini diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2007 ▶) T min = 0.430, T max = 1.000 9840 measured reflections 5032 independent reflections 3792 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.069 wR(F 2) = 0.230 S = 1.05 5032 reflections 289 parameters 48 restraints H-atom parameters constrained Δρmax = 1.02 e Å−3 Δρmin = −0.43 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2007 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis RED (Oxford Diffraction, 2007 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811028182/su2290sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811028182/su2290Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811028182/su2290Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H27F3N2OS2+·2ClF(000) = 2112
Mr = 507.44Dx = 1.346 Mg m3
Monoclinic, C2/cCu Kα radiation, λ = 1.54184 Å
Hall symbol: -C 2ycCell parameters from 3191 reflections
a = 34.1750 (17) Åθ = 5.2–75.3°
b = 7.1613 (3) ŵ = 3.46 mm1
c = 22.6351 (11) ÅT = 295 K
β = 115.307 (6)°Prism, colourless
V = 5008.0 (5) Å30.43 × 0.34 × 0.21 mm
Z = 8
Oxford Diffraction Xcalibur Ruby Gemini diffractometer5032 independent reflections
Radiation source: Enhance (Cu) X-ray Source3792 reflections with I > 2σ(I)
graphiteRint = 0.028
Detector resolution: 10.5081 pixels mm-1θmax = 75.4°, θmin = 5.5°
ω scansh = −42→41
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2007)k = −8→8
Tmin = 0.430, Tmax = 1.000l = −28→17
9840 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.069Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.230H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.1341P)2 + 2.8648P] where P = (Fo2 + 2Fc2)/3
5032 reflections(Δ/σ)max < 0.001
289 parametersΔρmax = 1.02 e Å3
48 restraintsΔρmin = −0.43 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
S0.57461 (4)1.14222 (16)0.35221 (7)0.0884 (4)
F1B0.57123 (16)0.4027 (6)0.17114 (19)0.1148 (16)0.803 (6)
F2B0.5404 (2)0.6060 (7)0.0960 (2)0.153 (2)0.803 (6)
F3B0.50494 (14)0.4598 (8)0.1387 (3)0.156 (2)0.803 (6)
O10.81039 (14)0.4005 (6)0.22005 (15)0.1096 (15)
N10.74387 (7)0.4815 (4)0.39823 (12)0.0526 (7)
N20.81206 (8)0.4717 (4)0.35317 (11)0.0554 (8)
C10.60586 (9)0.7385 (5)0.38628 (16)0.0576 (9)
C20.58158 (6)0.7828 (3)0.31479 (8)0.0575 (9)
C30.57390 (7)0.6452 (2)0.26781 (10)0.0638 (10)
C40.55139 (7)0.6884 (3)0.20190 (9)0.0691 (11)
C50.53658 (8)0.8693 (4)0.18297 (8)0.0803 (14)
C60.54426 (8)1.0069 (3)0.22994 (12)0.0813 (16)
C70.56677 (7)0.9636 (3)0.29585 (11)0.0675 (11)
C80.57315 (10)1.0114 (6)0.41747 (19)0.0704 (11)
C90.55696 (12)1.0993 (8)0.4577 (2)0.0892 (18)
C100.55546 (13)1.0009 (10)0.5087 (2)0.098 (2)
C110.56923 (16)0.8215 (10)0.5202 (2)0.098 (2)
C120.58549 (13)0.7320 (7)0.48050 (19)0.0804 (14)
C130.58772 (10)0.8272 (6)0.42855 (17)0.0639 (10)
C140.54294 (13)0.5409 (7)0.15137 (18)0.0959 (18)
C150.64145 (11)0.6333 (5)0.41210 (17)0.0631 (10)
C160.66663 (10)0.5476 (5)0.37845 (17)0.0623 (10)
C170.71416 (10)0.5881 (5)0.41901 (15)0.0574 (9)
C180.78999 (10)0.5299 (6)0.44121 (14)0.0654 (12)
C190.82119 (10)0.4273 (6)0.42243 (15)0.0669 (12)
C200.76719 (10)0.4095 (5)0.31076 (15)0.0609 (10)
C210.73502 (9)0.5109 (5)0.32828 (14)0.0585 (9)
C220.84554 (11)0.3868 (6)0.33492 (18)0.0703 (13)
C230.84521 (12)0.4698 (7)0.27293 (19)0.0754 (14)
F3A0.5493 (6)0.3669 (14)0.1704 (10)0.156 (2)0.197 (6)
F1A0.5709 (4)0.581 (2)0.1264 (8)0.1148 (16)0.197 (6)
F2A0.5040 (3)0.556 (3)0.1030 (6)0.153 (2)0.197 (6)
Cl10.78205 (5)0.58962 (13)0.08841 (5)0.0878 (4)
Cl20.81966 (4)0.89329 (16)0.34901 (7)0.0992 (4)
H1B0.801700.479200.191000.1640*
H5A0.521500.898200.138900.0960*
H2A0.813200.597900.349500.0670*
H3A0.583800.524200.280500.0770*
H1A0.740200.357900.403700.0630*
H11A0.567900.757200.555000.1180*
H12A0.594800.608700.488900.0960*
H15A0.652000.610100.456700.0760*
H16A0.657300.600300.335100.0750*
H6A0.534301.127900.217300.0980*
H9A0.547401.222400.450000.1070*
H10A0.544801.058200.535700.1170*
H18A0.796200.500200.486200.0790*
H18B0.794100.663200.438600.0790*
H19A0.850600.463500.451100.0800*
H19B0.818400.293900.427100.0800*
H20A0.764800.276200.315900.0730*
H20B0.760800.433600.265400.0730*
H21A0.736200.643400.320300.0700*
H21B0.706100.466900.300500.0700*
H22A0.840500.253500.328900.0840*
H22B0.873900.405200.370600.0840*
H23A0.843300.604800.274000.0900*
H23B0.871800.437800.269700.0900*
H16B0.661800.413800.374200.0750*
H17A0.719100.720700.416500.0690*
H17B0.721400.558600.464300.0690*
U11U22U33U12U13U23
S0.0929 (7)0.0654 (6)0.1139 (8)0.0122 (5)0.0508 (6)0.0065 (5)
F1B0.132 (3)0.112 (3)0.093 (2)0.009 (2)0.041 (2)−0.020 (2)
F2B0.246 (6)0.139 (3)0.070 (2)−0.015 (4)0.064 (3)0.007 (2)
F3B0.129 (3)0.150 (4)0.156 (4)−0.058 (3)0.030 (3)−0.033 (3)
O10.124 (3)0.129 (3)0.0652 (16)−0.048 (2)0.0302 (17)−0.0017 (17)
N10.0480 (12)0.0530 (13)0.0522 (13)0.0016 (10)0.0169 (10)0.0101 (10)
N20.0478 (12)0.0677 (15)0.0464 (12)−0.0014 (11)0.0159 (9)0.0046 (11)
C10.0474 (14)0.0607 (17)0.0644 (16)−0.0007 (13)0.0237 (12)0.0043 (14)
C20.0438 (13)0.0623 (17)0.0693 (18)0.0024 (12)0.0269 (12)0.0100 (15)
C30.0514 (15)0.0686 (19)0.0668 (18)−0.0023 (14)0.0208 (13)0.0109 (16)
C40.0506 (16)0.085 (2)0.0688 (19)−0.0043 (16)0.0227 (14)0.0097 (18)
C50.0608 (19)0.106 (3)0.075 (2)0.014 (2)0.0298 (17)0.032 (2)
C60.077 (2)0.085 (3)0.094 (3)0.027 (2)0.048 (2)0.037 (2)
C70.0565 (17)0.072 (2)0.083 (2)0.0091 (15)0.0385 (16)0.0152 (18)
C80.0448 (14)0.084 (2)0.079 (2)0.0041 (15)0.0231 (14)−0.0116 (19)
C90.0517 (18)0.114 (4)0.091 (3)0.011 (2)0.0202 (17)−0.025 (3)
C100.0555 (19)0.153 (5)0.083 (3)0.001 (3)0.0279 (18)−0.033 (3)
C110.078 (3)0.149 (5)0.073 (2)−0.024 (3)0.037 (2)−0.011 (3)
C120.072 (2)0.102 (3)0.068 (2)−0.010 (2)0.0307 (17)−0.002 (2)
C130.0429 (13)0.081 (2)0.0644 (18)−0.0036 (14)0.0198 (12)−0.0025 (16)
C140.096 (3)0.108 (4)0.067 (2)−0.014 (3)0.019 (2)−0.004 (2)
C150.0567 (16)0.0662 (19)0.0625 (17)0.0038 (14)0.0217 (14)0.0051 (15)
C160.0529 (16)0.0620 (18)0.0651 (18)0.0104 (14)0.0185 (13)0.0022 (15)
C170.0579 (16)0.0559 (17)0.0552 (15)0.0031 (13)0.0212 (13)0.0033 (13)
C180.0523 (15)0.095 (3)0.0416 (14)−0.0110 (16)0.0130 (11)0.0023 (15)
C190.0426 (14)0.102 (3)0.0483 (15)−0.0018 (15)0.0119 (11)0.0122 (16)
C200.0485 (15)0.075 (2)0.0498 (15)0.0028 (14)0.0119 (12)−0.0014 (14)
C210.0493 (14)0.0712 (19)0.0456 (14)0.0073 (14)0.0112 (11)0.0058 (13)
C220.0511 (16)0.091 (3)0.0645 (18)0.0055 (16)0.0207 (14)−0.0011 (17)
C230.0643 (19)0.097 (3)0.072 (2)−0.0101 (19)0.0360 (16)−0.010 (2)
F3A0.129 (3)0.150 (4)0.156 (4)−0.058 (3)0.030 (3)−0.033 (3)
F1A0.132 (3)0.112 (3)0.093 (2)0.009 (2)0.041 (2)−0.020 (2)
F2A0.246 (6)0.139 (3)0.070 (2)−0.015 (4)0.064 (3)0.007 (2)
Cl10.1424 (10)0.0536 (5)0.0658 (5)0.0110 (5)0.0430 (6)−0.0025 (4)
Cl20.0772 (6)0.0709 (6)0.1183 (9)−0.0076 (5)0.0121 (6)0.0168 (6)
S—C71.745 (3)C11—C121.398 (7)
S—C81.768 (4)C12—C131.389 (6)
F1A—C141.333 (16)C15—C161.503 (5)
F1B—C141.321 (7)C16—C171.513 (5)
F2A—C141.318 (13)C18—C191.498 (5)
F2B—C141.305 (6)C20—C211.505 (5)
F3A—C141.306 (12)C22—C231.520 (6)
F3B—C141.337 (7)C3—H3A0.9300
O1—C231.370 (6)C5—H5A0.9300
O1—H1B0.8200C6—H6A0.9300
N1—C181.497 (4)C9—H9A0.9300
N1—C211.494 (4)C10—H10A0.9300
N1—C171.498 (5)C11—H11A0.9300
N2—C191.496 (4)C12—H12A0.9300
N2—C201.488 (4)C15—H15A0.9300
N2—C221.501 (5)C16—H16A0.9700
N1—H1A0.9100C16—H16B0.9700
N2—H2A0.9100C17—H17A0.9700
C1—C131.487 (5)C17—H17B0.9700
C1—C21.503 (4)C18—H18A0.9700
C1—C151.335 (5)C18—H18B0.9700
C2—C71.390 (3)C19—H19A0.9700
C2—C31.390 (3)C19—H19B0.9700
C3—C41.390 (3)C20—H20A0.9700
C4—C141.492 (5)C20—H20B0.9700
C4—C51.390 (4)C21—H21A0.9700
C5—C61.390 (3)C21—H21B0.9700
C6—C71.390 (3)C22—H22A0.9700
C8—C131.394 (6)C22—H22B0.9700
C8—C91.401 (6)C23—H23A0.9700
C9—C101.372 (7)C23—H23B0.9700
C10—C111.355 (10)
C7—S—C899.91 (17)N2—C22—C23113.0 (3)
C23—O1—H1B109.00O1—C23—C22109.0 (4)
C17—N1—C21113.8 (2)C2—C3—H3A120.00
C18—N1—C21109.6 (2)C4—C3—H3A120.00
C17—N1—C18110.2 (3)C4—C5—H5A120.00
C19—N2—C22111.1 (3)C6—C5—H5A120.00
C20—N2—C22113.4 (3)C5—C6—H6A120.00
C19—N2—C20108.0 (3)C7—C6—H6A120.00
C17—N1—H1A108.00C8—C9—H9A121.00
C18—N1—H1A108.00C10—C9—H9A121.00
C21—N1—H1A108.00C9—C10—H10A119.00
C19—N2—H2A108.00C11—C10—H10A120.00
C20—N2—H2A108.00C10—C11—H11A120.00
C22—N2—H2A108.00C12—C11—H11A120.00
C13—C1—C15120.8 (3)C11—C12—H12A120.00
C2—C1—C13114.4 (3)C13—C12—H12A120.00
C2—C1—C15124.8 (3)C1—C15—H15A116.00
C3—C2—C7119.99 (17)C16—C15—H15A116.00
C1—C2—C3120.7 (2)C15—C16—H16A110.00
C1—C2—C7119.3 (2)C15—C16—H16B110.00
C2—C3—C4120.01 (16)C17—C16—H16A110.00
C3—C4—C5119.98 (17)C17—C16—H16B110.00
C3—C4—C14120.2 (2)H16A—C16—H16B108.00
C5—C4—C14119.9 (2)N1—C17—H17A109.00
C4—C5—C6120.01 (17)N1—C17—H17B109.00
C5—C6—C7120.0 (2)C16—C17—H17A109.00
S—C7—C2122.40 (17)C16—C17—H17B109.00
S—C7—C6117.57 (17)H17A—C17—H17B108.00
C2—C7—C6120.0 (2)N1—C18—H18A109.00
S—C8—C13121.1 (3)N1—C18—H18B109.00
C9—C8—C13121.2 (4)C19—C18—H18A109.00
S—C8—C9117.7 (3)C19—C18—H18B109.00
C8—C9—C10118.9 (5)H18A—C18—H18B108.00
C9—C10—C11120.9 (5)N2—C19—H19A110.00
C10—C11—C12120.8 (5)N2—C19—H19B110.00
C11—C12—C13120.0 (5)C18—C19—H19A110.00
C1—C13—C12121.6 (4)C18—C19—H19B110.00
C1—C13—C8120.2 (3)H19A—C19—H19B108.00
C8—C13—C12118.2 (4)N2—C20—H20A110.00
F1B—C14—F2B109.4 (5)N2—C20—H20B109.00
F1B—C14—F3B104.5 (5)C21—C20—H20A110.00
F1B—C14—C4113.4 (3)C21—C20—H20B110.00
F2B—C14—F3B106.8 (5)H20A—C20—H20B108.00
F2B—C14—C4113.3 (4)N1—C21—H21A109.00
F3B—C14—C4108.9 (4)N1—C21—H21B109.00
F3A—C14—C4118.2 (9)C20—C21—H21A109.00
F1A—C14—C4103.5 (7)C20—C21—H21B109.00
F2A—C14—C4112.0 (9)H21A—C21—H21B108.00
F2A—C14—F3A108.6 (13)N2—C22—H22A109.00
F1A—C14—F2A106.4 (9)N2—C22—H22B109.00
F1A—C14—F3A107.3 (12)C23—C22—H22A109.00
C1—C15—C16128.4 (3)C23—C22—H22B109.00
C15—C16—C17108.2 (3)H22A—C22—H22B108.00
N1—C17—C16114.1 (3)O1—C23—H23A110.00
N1—C18—C19112.4 (3)O1—C23—H23B110.00
N2—C19—C18109.8 (3)C22—C23—H23A110.00
N2—C20—C21110.7 (3)C22—C23—H23B110.00
N1—C21—C20111.8 (3)H23A—C23—H23B108.00
C8—S—C7—C2−31.8 (3)C3—C2—C7—C60.0 (4)
C8—S—C7—C6147.3 (2)C2—C3—C4—C50.0 (4)
C7—S—C8—C9−148.7 (3)C2—C3—C4—C14−179.8 (3)
C7—S—C8—C1331.5 (4)C3—C4—C5—C60.0 (4)
C18—N1—C17—C16−179.7 (3)C14—C4—C5—C6179.8 (3)
C21—N1—C17—C1656.7 (4)C3—C4—C14—F1B−25.0 (5)
C17—N1—C18—C19−179.9 (3)C3—C4—C14—F2B−150.5 (4)
C21—N1—C18—C19−53.9 (4)C3—C4—C14—F3B90.8 (4)
C17—N1—C21—C20176.9 (3)C5—C4—C14—F1B155.2 (4)
C18—N1—C21—C2053.0 (4)C5—C4—C14—F2B29.8 (6)
C20—N2—C19—C18−60.8 (4)C5—C4—C14—F3B−89.0 (4)
C22—N2—C19—C18174.2 (3)C4—C5—C6—C70.0 (4)
C19—N2—C20—C2160.8 (4)C5—C6—C7—S−179.1 (2)
C22—N2—C20—C21−175.6 (3)C5—C6—C7—C20.0 (4)
C19—N2—C22—C23−164.1 (3)S—C8—C9—C10180.0 (4)
C20—N2—C22—C2374.0 (4)C13—C8—C9—C10−0.2 (6)
C13—C1—C2—C3−138.9 (3)S—C8—C13—C11.5 (5)
C13—C1—C2—C741.1 (4)S—C8—C13—C12−179.7 (3)
C15—C1—C2—C342.8 (5)C9—C8—C13—C1−178.4 (4)
C15—C1—C2—C7−137.2 (3)C9—C8—C13—C120.5 (6)
C2—C1—C13—C8−41.3 (5)C8—C9—C10—C11−0.2 (7)
C2—C1—C13—C12139.9 (4)C9—C10—C11—C120.2 (8)
C15—C1—C13—C8137.1 (4)C10—C11—C12—C130.1 (7)
C15—C1—C13—C12−41.7 (6)C11—C12—C13—C1178.4 (4)
C2—C1—C15—C164.3 (6)C11—C12—C13—C8−0.4 (6)
C13—C1—C15—C16−173.9 (4)C1—C15—C16—C17132.6 (4)
C1—C2—C3—C4180.0 (2)C15—C16—C17—N1169.2 (3)
C7—C2—C3—C40.0 (4)N1—C18—C19—N258.8 (4)
C1—C2—C7—S−0.9 (3)N2—C20—C21—N1−58.1 (4)
C1—C2—C7—C6−180.0 (3)N2—C22—C23—O1−75.4 (5)
C3—C2—C7—S179.1 (2)
Cg1 and Cg2 are the centroids of the C2–C7 and C8–C13 benzene rings, respectively.
D—H···AD—HH···AD···AD—H···A
N1—H1A···Cl1i0.912.102.997 (3)168
O1—H1B···Cl10.822.273.030 (4)155
N2—H2A···Cl20.912.133.035 (3)175
C17—H17A···Cl1ii0.972.643.600 (4)169
C18—H18A···Cl1iii0.972.643.561 (3)159
C20—H20B···O10.972.342.999 (6)125
C21—H21A···O1ii0.972.353.153 (6)140
C22—H22A···Cl2iv0.972.773.690 (4)160
C19—H19A···Cg2v0.972.653.618 (4)176
C23—H23B···Cg1i0.972.693.658 (5)174
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the C2–C7 and C8–C13 benzene rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯Cl1i0.912.102.997 (3)168
O1—H1B⋯Cl10.822.273.030 (4)155
N2—H2A⋯Cl20.912.133.035 (3)175
C17—H17A⋯Cl1ii0.972.643.600 (4)169
C18—H18A⋯Cl1iii0.972.643.561 (3)159
C20—H20B⋯O10.972.342.999 (6)125
C21—H21A⋯O1ii0.972.353.153 (6)140
C22—H22A⋯Cl2iv0.972.773.690 (4)160
C19—H19ACg2v0.972.653.618 (4)176
C23—H23BCg1i0.972.693.658 (5)174

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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