Literature DB >> 24454104

Methyl 2-[4-(tri-fluoro-meth-yl)phenyl-sulfan-yl]benzoate.

Thammarse S Yamuna1, Jerry P Jasinski2, Brian J Anderson2, H S Yathirajan1, Manpreet Kaur1.   

Abstract

In the title compound, C15H13F3O2S, the dihedral angle between the benzene rings is 79.5 (1)°. The ester group is twisted by 7.6 (1)° from the mean plane of the adjacent benzene ring. Disorder was modeled over two sites for one F atom of the tri-fluoro-methyl group with an occupancy ratio of 0.54 (6):0.46 (6). In the crystal, mol-ecules are linked via weak C-H⋯O hydrogen bonds, forming two-dimensional networks lying parallel to (101). The networks are linked via C-H⋯π inter-actions, leading to the formation of a three-dimensional supra-molecular structure.

Entities:  

Year:  2013        PMID: 24454104      PMCID: PMC3884328          DOI: 10.1107/S1600536813028146

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background and pharmacological properties of the neuroleptic agent flupentixol [systematic name: (EZ)-2-[4-[3-[2-(tri­fluoro­meth­yl)thioxanthen-9-yl­idene]prop­yl]pip­era­zin-1-yl]ethanol] and related compounds, see: Ovhed (1976 ▶); Robertson & Trimble (1981 ▶); Valle-Jones & Swarbrick (1981 ▶); Young et al. (1976 ▶). For related structures, see: Post et al. (1975a ▶,b ▶); Siddegowda et al. (2011a ▶,b ▶). For standard bond lengths, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C15H11F3O2S M = 312.30 Monoclinic, a = 11.0675 (5) Å b = 8.0429 (3) Å c = 15.6614 (7) Å β = 96.654 (5)° V = 1384.70 (11) Å3 Z = 4 Cu Kα radiation μ = 2.44 mm−1 T = 173 K 0.28 × 0.22 × 0.12 mm

Data collection

Agilent Gemini EOS diffractometer Absorption correction: multi-scan (CrysAlis PRO and CrysAlis RED; Agilent, 2012 ▶) T min = 0.715, T max = 1.000 8110 measured reflections 2705 independent reflections 2224 reflections with I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.123 S = 1.03 2705 reflections 201 parameters H-atom parameters constrained Δρmax = 0.36 e Å−3 Δρmin = −0.27 e Å−3 Data collection: CrysAlis PRO (Agilent, 2012 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis RED (Agilent, 2012 ▶); program(s) used to solve structure: SUPERFLIP (Palatinus & Chapuis, 2007 ▶); program(s) used to refine structure: SHELXL2012 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: OLEX2. Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536813028146/su2658sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813028146/su2658Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813028146/su2658Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H11F3O2SF(000) = 640
Mr = 312.30Dx = 1.498 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54184 Å
a = 11.0675 (5) ÅCell parameters from 2806 reflections
b = 8.0429 (3) Åθ = 4.0–72.2°
c = 15.6614 (7) ŵ = 2.44 mm1
β = 96.654 (5)°T = 173 K
V = 1384.70 (11) Å3Block, colourless
Z = 40.28 × 0.22 × 0.12 mm
Agilent Gemini EOS diffractometer2705 independent reflections
Radiation source: Enhance (Cu) X-ray Source2224 reflections with I > 2σ(I)
Detector resolution: 16.0416 pixels mm-1Rint = 0.039
ω scansθmax = 72.4°, θmin = 4.0°
Absorption correction: multi-scan (CrysAlis PRO and CrysAlis RED; Agilent, 2012)h = −13→10
Tmin = 0.715, Tmax = 1.000k = −9→7
8110 measured reflectionsl = −18→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.043H-atom parameters constrained
wR(F2) = 0.123w = 1/[σ2(Fo2) + (0.0689P)2 + 0.2842P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
2705 reflectionsΔρmax = 0.36 e Å3
201 parametersΔρmin = −0.27 e Å3
0 restraints
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/UeqOcc. (<1)
S10.74068 (5)0.20434 (6)0.53524 (4)0.03547 (18)
F11.15258 (18)0.4950 (3)0.29524 (12)0.0867 (7)
F21.02027 (17)0.4280 (3)0.19408 (10)0.0764 (6)
F31.1534 (11)0.257 (2)0.2621 (9)0.078 (3)0.54 (6)
F3A1.121 (4)0.234 (3)0.240 (3)0.127 (7)0.46 (6)
O10.50339 (13)−0.10252 (18)0.67852 (9)0.0370 (4)
O20.61424 (16)0.1251 (2)0.66627 (11)0.0504 (5)
C10.58173 (17)−0.0107 (3)0.64017 (13)0.0289 (4)
C20.62526 (16)−0.0927 (2)0.56503 (12)0.0268 (4)
C30.59456 (18)−0.2586 (3)0.54673 (13)0.0314 (4)
H30.5458−0.31510.58160.038*
C40.63512 (19)−0.3401 (3)0.47797 (14)0.0354 (5)
H40.6149−0.45090.46700.042*
C50.70653 (19)−0.2546 (3)0.42526 (13)0.0343 (5)
H50.7332−0.30820.37830.041*
C60.73828 (18)−0.0906 (3)0.44206 (13)0.0313 (4)
H60.7866−0.03550.40630.038*
C70.69912 (16)−0.0063 (2)0.51164 (13)0.0271 (4)
C80.83570 (18)0.2519 (2)0.45386 (13)0.0310 (4)
C90.78756 (19)0.2956 (3)0.37134 (15)0.0352 (5)
H90.70370.29650.35660.042*
C100.8636 (2)0.3378 (3)0.31074 (14)0.0368 (5)
H100.83120.36600.25520.044*
C110.98830 (19)0.3377 (3)0.33316 (14)0.0345 (5)
C121.0368 (2)0.2971 (3)0.41589 (15)0.0435 (6)
H121.12050.29890.43100.052*
C130.9604 (2)0.2538 (3)0.47609 (15)0.0419 (5)
H130.99290.22580.53170.050*
C141.0745 (2)0.3760 (3)0.26912 (17)0.0493 (6)
C150.4586 (2)−0.0262 (3)0.75237 (14)0.0406 (5)
H15A0.42360.08010.73630.061*
H15B0.5247−0.01170.79720.061*
H15C0.3979−0.09640.77270.061*
U11U22U33U12U13U23
S10.0389 (3)0.0280 (3)0.0428 (3)−0.0061 (2)0.0183 (2)−0.0040 (2)
F10.0817 (12)0.1103 (16)0.0725 (12)−0.0512 (12)0.0279 (10)0.0079 (11)
F20.0827 (12)0.1077 (16)0.0416 (9)−0.0139 (11)0.0196 (8)0.0172 (9)
F30.078 (6)0.083 (8)0.083 (5)0.030 (4)0.054 (5)0.025 (4)
F3A0.196 (15)0.049 (4)0.166 (15)0.017 (9)0.151 (12)0.011 (8)
O10.0469 (9)0.0324 (8)0.0350 (8)−0.0067 (6)0.0189 (7)−0.0022 (6)
O20.0583 (10)0.0422 (9)0.0564 (11)−0.0182 (8)0.0304 (8)−0.0184 (8)
C10.0261 (9)0.0314 (10)0.0295 (10)−0.0011 (8)0.0042 (7)0.0000 (8)
C20.0229 (9)0.0297 (10)0.0277 (9)−0.0004 (7)0.0020 (7)0.0010 (7)
C30.0304 (10)0.0308 (10)0.0335 (10)−0.0052 (8)0.0061 (8)0.0007 (8)
C40.0392 (11)0.0281 (10)0.0391 (12)−0.0053 (9)0.0057 (9)−0.0051 (8)
C50.0378 (11)0.0345 (11)0.0316 (10)0.0019 (9)0.0082 (9)−0.0058 (8)
C60.0310 (10)0.0327 (11)0.0317 (10)0.0014 (8)0.0099 (8)0.0034 (8)
C70.0249 (9)0.0246 (9)0.0320 (10)0.0007 (7)0.0036 (7)0.0013 (7)
C80.0329 (10)0.0251 (9)0.0368 (11)−0.0028 (8)0.0117 (8)0.0011 (8)
C90.0293 (10)0.0331 (11)0.0429 (12)0.0018 (8)0.0027 (9)0.0012 (9)
C100.0433 (12)0.0341 (11)0.0325 (11)0.0014 (9)0.0031 (9)0.0049 (9)
C110.0394 (11)0.0300 (11)0.0353 (11)−0.0036 (9)0.0098 (9)0.0018 (8)
C120.0289 (11)0.0611 (16)0.0407 (13)−0.0067 (10)0.0046 (9)0.0080 (11)
C130.0361 (12)0.0558 (14)0.0337 (11)−0.0031 (10)0.0039 (9)0.0097 (10)
C140.0543 (15)0.0508 (15)0.0458 (14)−0.0043 (12)0.0186 (11)0.0103 (11)
C150.0508 (13)0.0427 (13)0.0315 (11)−0.0040 (10)0.0179 (9)−0.0010 (9)
S1—C71.783 (2)C5—C61.382 (3)
S1—C81.785 (2)C6—H60.9300
F1—C141.322 (3)C6—C71.394 (3)
F2—C141.324 (3)C8—C91.385 (3)
F3—C141.311 (13)C8—C131.384 (3)
F3A—C141.354 (19)C9—H90.9300
O1—C11.334 (2)C9—C101.382 (3)
O1—C151.446 (2)C10—H100.9300
O2—C11.206 (3)C10—C111.384 (3)
C1—C21.478 (3)C11—C121.383 (3)
C2—C31.398 (3)C11—C141.494 (3)
C2—C71.417 (3)C12—H120.9300
C3—H30.9300C12—C131.382 (3)
C3—C41.380 (3)C13—H130.9300
C4—H40.9300C15—H15A0.9600
C4—C51.389 (3)C15—H15B0.9600
C5—H50.9300C15—H15C0.9600
C7—S1—C8102.41 (9)C10—C9—H9119.9
C1—O1—C15115.20 (17)C9—C10—H10120.2
O1—C1—C2113.60 (17)C9—C10—C11119.6 (2)
O2—C1—O1122.19 (19)C11—C10—H10120.2
O2—C1—C2124.20 (18)C10—C11—C14121.7 (2)
C3—C2—C1119.69 (18)C12—C11—C10120.3 (2)
C3—C2—C7119.33 (18)C12—C11—C14118.0 (2)
C7—C2—C1120.97 (18)C11—C12—H12120.1
C2—C3—H3119.3C13—C12—C11119.8 (2)
C4—C3—C2121.35 (19)C13—C12—H12120.1
C4—C3—H3119.3C8—C13—H13119.9
C3—C4—H4120.4C12—C13—C8120.1 (2)
C3—C4—C5119.17 (19)C12—C13—H13119.9
C5—C4—H4120.4F1—C14—F2105.0 (2)
C4—C5—H5119.7F1—C14—F3A117 (2)
C6—C5—C4120.58 (19)F1—C14—C11112.7 (2)
C6—C5—H5119.7F2—C14—F3A97 (2)
C5—C6—H6119.4F2—C14—C11113.7 (2)
C5—C6—C7121.16 (19)F3—C14—F198.0 (8)
C7—C6—H6119.4F3—C14—F2113.3 (7)
C2—C7—S1119.74 (15)F3—C14—C11112.8 (7)
C6—C7—S1121.86 (15)F3A—C14—C11110.7 (8)
C6—C7—C2118.40 (18)O1—C15—H15A109.5
C9—C8—S1121.72 (16)O1—C15—H15B109.5
C13—C8—S1118.39 (16)O1—C15—H15C109.5
C13—C8—C9119.78 (19)H15A—C15—H15B109.5
C8—C9—H9119.9H15A—C15—H15C109.5
C10—C9—C8120.3 (2)H15B—C15—H15C109.5
S1—C8—C9—C10177.55 (16)C8—S1—C7—C6−1.42 (18)
S1—C8—C13—C12−177.2 (2)C8—C9—C10—C11−0.6 (3)
O1—C1—C2—C3−7.3 (3)C9—C8—C13—C12−0.8 (4)
O1—C1—C2—C7173.53 (17)C9—C10—C11—C12−0.5 (3)
O2—C1—C2—C3171.6 (2)C9—C10—C11—C14177.6 (2)
O2—C1—C2—C7−7.6 (3)C10—C11—C12—C131.0 (4)
C1—C2—C3—C4−178.95 (19)C10—C11—C14—F1127.0 (3)
C1—C2—C7—S10.1 (2)C10—C11—C14—F27.6 (4)
C1—C2—C7—C6179.48 (17)C10—C11—C14—F3−123.1 (8)
C2—C3—C4—C5−0.9 (3)C10—C11—C14—F3A−100 (2)
C3—C2—C7—S1−179.11 (15)C11—C12—C13—C8−0.4 (4)
C3—C2—C7—C60.3 (3)C12—C11—C14—F1−54.9 (3)
C3—C4—C5—C61.0 (3)C12—C11—C14—F2−174.2 (2)
C4—C5—C6—C7−0.4 (3)C12—C11—C14—F355.0 (9)
C5—C6—C7—S1179.17 (16)C12—C11—C14—F3A78 (2)
C5—C6—C7—C2−0.2 (3)C13—C8—C9—C101.3 (3)
C7—S1—C8—C981.16 (19)C14—C11—C12—C13−177.2 (2)
C7—S1—C8—C13−102.49 (19)C15—O1—C1—O21.2 (3)
C7—C2—C3—C40.3 (3)C15—O1—C1—C2−179.96 (17)
C8—S1—C7—C2177.93 (15)
D—H···AD—HH···AD···AD—H···A
C15—H15C···O2i0.962.453.221 (3)138
C12—H12···Cgii0.932.703.558 (2)154
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the C2–C7 benzene ring.

D—H⋯A D—HH⋯A DA D—H⋯A
C15—H15C⋯O2i 0.962.453.221 (3)138
C12—H12⋯Cg ii 0.932.703.558 (2)154

Symmetry codes: (i) ; (ii) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Once daily flupenthixol in the treatment of elderly depressed patients: a multi-centre trial in general practice.

Authors:  J C Vallé-Jones; D J Swarbrick
Journal:  Curr Med Res Opin       Date:  1981       Impact factor: 2.580

3.  The antidepressant action of flupenthixol.

Authors:  M M Robertson; M R Trimble
Journal:  Practitioner       Date:  1981-05

4.  A double-blind study of flupenthixol ('Fluanxol') in general practice.

Authors:  I Ovhed
Journal:  Curr Med Res Opin       Date:  1976       Impact factor: 2.580

5.  1-(2-Hy-droxy-eth-yl)-4-[3-(2-trifluoro-methyl-9H-thioxanthen-9-yl-idene)prop-yl]piperazine-1,4-diium dichloride: the dihydro-chloride salt of flupentixol.

Authors:  M S Siddegowda; Ray J Butcher; Mehmet Akkurt; H S Yathirajan; B Narayana
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-23

6.  1-(2-Hy-droxy-eth-yl)-4-{3-[(E)-2-(trifluoro-meth-yl)-9H-thioxanthen-9-yl-idene]prop-yl}piperazine-1,4-diium bis-(3-carb-oxy-prop-2-enoate).

Authors:  M S Siddegowda; Ray J Butcher; Mehmet Akkurt; H S Yathirajan; A R Ramesh
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-13
  6 in total

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