Literature DB >> 24454130

2-[4-(Tri-fluoro-meth-yl)phenyl-sulfan-yl]benzoic acid.

Thammarse S Yamuna1, Jerry P Jasinski2, Brian J Anderson2, H S Yathirajan1, Manpreet Kaur1.   

Abstract

In the title compound, C14H9F3O2S, the dihedral angle between the mean planes of the benzene rings is 88.7 (2)°. The carb-oxy-lic acid group is twisted by 13.6 (7)° from the mean plane of its attached aromatic ring. One of the F atoms of the tri-fluoro-methyl group is disordered over two sites in a 0.61 (7):0.39 (7) ratio. In the crystal, inversion dimers linked by pairs of O-H⋯O hydrogen bonds generate R 2 (2)(8) loops. Weak C-H⋯F inter-actions are also observed.

Entities:  

Year:  2013        PMID: 24454130      PMCID: PMC3884354          DOI: 10.1107/S1600536813028778

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the neuroleptic agent flupentixol (systematic name: (EZ)-2-[4-[3-[2-(tri­fluoro­meth­yl)thio­xan­then-9-yl­idene]prop­yl]piperazin-1-yl]ethanol), see: Young et al. (1976 ▶). For related structures, see: Post et al. (1975a ▶,b ▶); Siddegowda et al. (2011a ▶,b ▶).

Experimental

Crystal data

C14H9F3O2S M = 298.28 Triclinic, a = 7.3071 (5) Å b = 8.0790 (7) Å c = 11.3878 (11) Å α = 82.678 (8)° β = 83.642 (7)° γ = 72.309 (7)° V = 633.41 (10) Å3 Z = 2 Cu Kα radiation μ = 2.63 mm−1 T = 173 K 0.24 × 0.22 × 0.12 mm

Data collection

Agilent Gemini EOS diffractometer Absorption correction: multi-scan (CrysAlis PRO and CrysAlis RED; Agilent, 2012 ▶) T min = 0.848, T max = 1.000 3701 measured reflections 2419 independent reflections 2049 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.155 S = 1.04 2419 reflections 193 parameters H-atom parameters constrained Δρmax = 0.71 e Å−3 Δρmin = −0.38 e Å−3 Data collection: CrysAlis PRO (Agilent, 2012 ▶); cell refinement: CrysAlis PRO (Agilent, 2012 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SUPERFLIP (Palatinus & Chapuis, 2007 ▶); program(s) used to refine structure: SHELXL2012 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: OLEX2. Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536813028778/hb7150sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813028778/hb7150Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813028778/hb7150Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H9F3O2SZ = 2
Mr = 298.28F(000) = 304
Triclinic, P1Dx = 1.564 Mg m3
a = 7.3071 (5) ÅCu Kα radiation, λ = 1.54184 Å
b = 8.0790 (7) ÅCell parameters from 1645 reflections
c = 11.3878 (11) Åθ = 5.8–72.1°
α = 82.678 (8)°µ = 2.63 mm1
β = 83.642 (7)°T = 173 K
γ = 72.309 (7)°Irregular, colourless
V = 633.41 (10) Å30.24 × 0.22 × 0.12 mm
Agilent Gemini EOS diffractometer2419 independent reflections
Radiation source: Enhance (Cu) X-ray Source2049 reflections with I > 2σ(I)
Detector resolution: 16.0416 pixels mm-1Rint = 0.038
ω scansθmax = 72.2°, θmin = 5.8°
Absorption correction: multi-scan (CrysAlis PRO and CrysAlis RED; Agilent, 2012)h = −8→6
Tmin = 0.848, Tmax = 1.000k = −9→6
3701 measured reflectionsl = −13→14
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.054w = 1/[σ2(Fo2) + (0.0889P)2 + 0.2312P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.155(Δ/σ)max < 0.001
S = 1.04Δρmax = 0.71 e Å3
2419 reflectionsΔρmin = −0.38 e Å3
193 parametersExtinction correction: SHELXL2012 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.0044 (14)
Primary atom site location: structure-invariant direct methods
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/UeqOcc. (<1)
S10.51402 (10)0.35821 (8)0.70404 (6)0.0398 (3)
F11.2832 (3)0.1041 (3)1.0280 (2)0.0764 (7)
F21.0648 (3)0.1392 (4)1.16595 (19)0.0849 (8)
F31.1664 (14)0.3549 (10)1.0613 (12)0.054 (2)0.61 (7)
F3A1.094 (10)0.3613 (16)1.106 (6)0.100 (14)0.39 (7)
O10.2047 (3)0.4458 (2)0.56512 (17)0.0405 (5)
O2−0.0035 (3)0.7122 (2)0.54064 (19)0.0427 (5)
H2−0.06460.65920.51210.064*
C10.1620 (4)0.6021 (3)0.5733 (2)0.0332 (5)
C20.2907 (4)0.6861 (3)0.6177 (2)0.0316 (5)
C30.2487 (4)0.8678 (3)0.5973 (2)0.0376 (6)
H30.13870.93150.55950.045*
C40.3668 (4)0.9550 (3)0.6319 (2)0.0396 (6)
H40.33751.07570.61720.048*
C50.5291 (4)0.8595 (4)0.6888 (2)0.0400 (6)
H50.60980.91660.71250.048*
C60.5730 (4)0.6794 (3)0.7109 (2)0.0362 (6)
H60.68250.61740.74970.043*
C70.4555 (3)0.5897 (3)0.6759 (2)0.0303 (5)
C80.6908 (4)0.3131 (3)0.8091 (2)0.0328 (5)
C90.6355 (4)0.3133 (3)0.9291 (2)0.0378 (6)
H90.50550.33960.95480.045*
C100.7722 (4)0.2748 (4)1.0114 (2)0.0405 (6)
H100.73430.27401.09210.049*
C110.9646 (4)0.2375 (3)0.9731 (2)0.0335 (6)
C121.0216 (4)0.2340 (4)0.8540 (3)0.0447 (7)
H121.15180.20700.82880.054*
C130.8857 (4)0.2704 (4)0.7719 (3)0.0461 (7)
H130.92460.26630.69150.055*
C141.1122 (4)0.2104 (4)1.0605 (3)0.0450 (7)
U11U22U33U12U13U23
S10.0441 (4)0.0305 (4)0.0495 (4)−0.0120 (3)−0.0242 (3)−0.0013 (3)
F10.0508 (12)0.0796 (15)0.0942 (17)0.0002 (10)−0.0385 (11)−0.0105 (12)
F20.0770 (15)0.134 (2)0.0508 (12)−0.0459 (15)−0.0335 (10)0.0265 (12)
F30.057 (5)0.0356 (19)0.078 (4)−0.0181 (19)−0.034 (4)−0.002 (2)
F3A0.15 (3)0.034 (3)0.14 (2)−0.024 (7)−0.11 (2)−0.002 (6)
O10.0417 (10)0.0349 (10)0.0504 (11)−0.0126 (8)−0.0228 (8)−0.0039 (8)
O20.0356 (10)0.0404 (10)0.0559 (12)−0.0100 (8)−0.0219 (8)−0.0055 (9)
C10.0336 (13)0.0385 (14)0.0295 (12)−0.0123 (10)−0.0104 (10)0.0000 (10)
C20.0343 (13)0.0335 (12)0.0293 (12)−0.0112 (10)−0.0075 (9)−0.0039 (9)
C30.0381 (13)0.0339 (13)0.0410 (14)−0.0075 (11)−0.0138 (11)−0.0026 (10)
C40.0456 (15)0.0300 (13)0.0460 (15)−0.0124 (11)−0.0143 (12)−0.0016 (11)
C50.0415 (15)0.0410 (15)0.0452 (15)−0.0190 (12)−0.0141 (12)−0.0055 (11)
C60.0331 (13)0.0373 (14)0.0412 (14)−0.0117 (11)−0.0143 (11)−0.0019 (11)
C70.0308 (12)0.0316 (12)0.0302 (12)−0.0101 (10)−0.0078 (9)−0.0023 (9)
C80.0339 (12)0.0267 (12)0.0393 (13)−0.0082 (9)−0.0143 (10)−0.0009 (10)
C90.0317 (13)0.0391 (14)0.0441 (15)−0.0103 (11)−0.0066 (11)−0.0067 (11)
C100.0466 (15)0.0464 (16)0.0333 (13)−0.0192 (12)−0.0066 (11)−0.0041 (11)
C110.0387 (13)0.0219 (11)0.0424 (14)−0.0100 (9)−0.0145 (11)−0.0005 (9)
C120.0320 (13)0.0542 (17)0.0466 (16)−0.0077 (12)−0.0078 (11)−0.0086 (13)
C130.0395 (15)0.0595 (18)0.0365 (14)−0.0091 (13)−0.0037 (11)−0.0071 (13)
C140.0550 (18)0.0317 (13)0.0538 (17)−0.0154 (12)−0.0258 (14)0.0006 (12)
S1—C71.782 (2)C5—H50.9300
S1—C81.783 (2)C5—C61.387 (4)
F1—C141.328 (4)C6—H60.9300
F2—C141.322 (4)C6—C71.396 (3)
F3—C141.343 (8)C8—C91.381 (4)
F3A—C141.35 (2)C8—C131.390 (4)
O1—C11.218 (3)C9—H90.9300
O2—H20.8200C9—C101.384 (4)
O2—C11.324 (3)C10—H100.9300
C1—C21.477 (3)C10—C111.378 (4)
C2—C31.400 (4)C11—C121.375 (4)
C2—C71.404 (3)C11—C141.496 (4)
C3—H30.9300C12—H120.9300
C3—C41.383 (4)C12—C131.380 (4)
C4—H40.9300C13—H130.9300
C4—C51.381 (4)
C7—S1—C8101.59 (11)C13—C8—S1120.6 (2)
C1—O2—H2109.5C8—C9—H9119.7
O1—C1—O2122.6 (2)C8—C9—C10120.5 (2)
O1—C1—C2123.3 (2)C10—C9—H9119.7
O2—C1—C2114.1 (2)C9—C10—H10120.2
C3—C2—C1118.3 (2)C11—C10—C9119.7 (2)
C3—C2—C7119.4 (2)C11—C10—H10120.2
C7—C2—C1122.3 (2)C10—C11—C14120.1 (2)
C2—C3—H3119.2C12—C11—C10120.3 (2)
C4—C3—C2121.6 (2)C12—C11—C14119.5 (3)
C4—C3—H3119.2C11—C12—H12120.0
C3—C4—H4120.6C11—C12—C13120.0 (3)
C5—C4—C3118.8 (2)C13—C12—H12120.0
C5—C4—H4120.6C8—C13—H13119.9
C4—C5—H5119.7C12—C13—C8120.2 (3)
C4—C5—C6120.7 (2)C12—C13—H13119.9
C6—C5—H5119.7F1—C14—F397.8 (5)
C5—C6—H6119.5F1—C14—F3A122 (3)
C5—C6—C7121.1 (2)F1—C14—C11113.7 (2)
C7—C6—H6119.5F2—C14—F1104.4 (2)
C2—C7—S1120.83 (18)F2—C14—F3115.3 (6)
C6—C7—S1120.71 (19)F2—C14—F3A91 (3)
C6—C7—C2118.5 (2)F2—C14—C11113.2 (2)
C9—C8—S1120.1 (2)F3—C14—C11111.3 (4)
C9—C8—C13119.2 (2)F3A—C14—C11110.3 (8)
S1—C8—C9—C10178.6 (2)C8—S1—C7—C2−165.8 (2)
S1—C8—C13—C12−179.4 (2)C8—S1—C7—C614.5 (2)
O1—C1—C2—C3165.0 (3)C8—C9—C10—C110.6 (4)
O1—C1—C2—C7−13.0 (4)C9—C8—C13—C12−2.0 (4)
O2—C1—C2—C3−13.7 (3)C9—C10—C11—C12−1.7 (4)
O2—C1—C2—C7168.3 (2)C9—C10—C11—C14174.9 (2)
C1—C2—C3—C4−177.4 (2)C10—C11—C12—C131.0 (4)
C1—C2—C7—S1−2.1 (3)C10—C11—C14—F1151.3 (3)
C1—C2—C7—C6177.6 (2)C10—C11—C14—F232.4 (4)
C2—C3—C4—C5−0.5 (4)C10—C11—C14—F3−99.4 (7)
C3—C2—C7—S1179.85 (19)C10—C11—C14—F3A−68 (4)
C3—C2—C7—C6−0.4 (4)C11—C12—C13—C80.9 (5)
C3—C4—C5—C60.0 (4)C12—C11—C14—F1−32.1 (4)
C4—C5—C6—C70.3 (4)C12—C11—C14—F2−151.0 (3)
C5—C6—C7—S1179.6 (2)C12—C11—C14—F377.2 (7)
C5—C6—C7—C2−0.1 (4)C12—C11—C14—F3A109 (4)
C7—S1—C8—C989.1 (2)C13—C8—C9—C101.2 (4)
C7—S1—C8—C13−93.5 (2)C14—C11—C12—C13−175.6 (3)
C7—C2—C3—C40.7 (4)
D—H···AD—HH···AD···AD—H···A
O2—H2···O1i0.821.862.677 (3)175
C6—H6···F3ii0.932.593.319 (10)136
C6—H6···F3Aii0.932.503.294 (16)144
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O2—H2⋯O1i 0.821.862.677 (3)175
C6—H6⋯F3ii 0.932.593.319 (10)136
C6—H6⋯F3A ii 0.932.503.294 (16)144

Symmetry codes: (i) ; (ii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  A controlled comparison of flupenthixol and amitriptyline in depressed outpatients.

Authors:  J P Young; W C Hughes; M H Lader
Journal:  Br Med J       Date:  1976-05-08

3.  1-(2-Hy-droxy-eth-yl)-4-[3-(2-trifluoro-methyl-9H-thioxanthen-9-yl-idene)prop-yl]piperazine-1,4-diium dichloride: the dihydro-chloride salt of flupentixol.

Authors:  M S Siddegowda; Ray J Butcher; Mehmet Akkurt; H S Yathirajan; B Narayana
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-23

4.  1-(2-Hy-droxy-eth-yl)-4-{3-[(E)-2-(trifluoro-meth-yl)-9H-thioxanthen-9-yl-idene]prop-yl}piperazine-1,4-diium bis-(3-carb-oxy-prop-2-enoate).

Authors:  M S Siddegowda; Ray J Butcher; Mehmet Akkurt; H S Yathirajan; A R Ramesh
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-13
  4 in total
  1 in total

1.  Pyrimethaminium 2-{[4-(tri-fluoro-meth-yl)phen-yl]sulfan-yl}benzoate dimethyl sulfoxide monosolvate.

Authors:  Thammarse S Yamuna; Manpreet Kaur; Jerry P Jasinski; H S Yathirajan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-05-17
  1 in total

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