Literature DB >> 22064803

N,N'-Bis(2-methyl-phen-yl)-N''-(2,2,2-trichloro-acet-yl)phospho-ric triamide.

Mehrdad Pourayoubi, Mojtaba Keikha, Masood Parvez.   

Abstract

In the title compound, C(16)H(17)Cl(3)N(3)O(2)P, the P-N bonds in the P(O)[NH(2-CH(3))C(6)H(4)](2) unit [1.623 (4) and 1.637 (3) Å] are shorter than the P-N bond in the C(O)NHP(O) fragment [1.704 (3) Å]. The phosphoryl and carbonyl groups are anti with respect to each other and the P atom has a distorted tetra-hedral configuration. In the crystal, adjacent mol-ecules are linked via N-H⋯O(P) and N-H⋯O(C) hydrogen bonds into an extended chain parallel to [101].

Entities:  

Year:  2011        PMID: 22064803      PMCID: PMC3201409          DOI: 10.1107/S1600536811039511

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to compounds having a C(O)NHP(O) skeleton, see: Toghraee et al. (2011 ▶); Pourayoubi, Tarahhomi et al. (2011 ▶). For bond lengths and angles in a related structure, see: Pourayoubi, Fadaei & Parvez (2011 ▶).

Experimental

Crystal data

C16H17Cl3N3O2P M = 420.65 Monoclinic, a = 14.2030 (5) Å b = 16.1935 (6) Å c = 16.9107 (6) Å β = 102.3720 (19)° V = 3799.1 (2) Å3 Z = 8 Mo Kα radiation μ = 0.58 mm−1 T = 173 K 0.10 × 0.09 × 0.08 mm

Data collection

Nonius KappaCCD diffractometer with APEXII CCD Absorption correction: multi-scan (SORTAV; Blessing, 1997 ▶) T min = 0.944, T max = 0.955 8110 measured reflections 4296 independent reflections 3031 reflections with I > 2σ(I) R int = 0.055

Refinement

R[F 2 > 2σ(F 2)] = 0.071 wR(F 2) = 0.141 S = 1.11 4296 reflections 228 parameters H-atom parameters constrained Δρmax = 0.48 e Å−3 Δρmin = −0.38 e Å−3 Data collection: COLLECT (Hooft, 1998 ▶); cell refinement: DENZO (Otwinowski & Minor, 1997 ▶); data reduction: SCALEPACK (Otwinowski & Minor, 1997 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97 and enCIFer (Allen et al., 2004 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811039511/jj2101sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811039511/jj2101Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H17Cl3N3O2PF(000) = 1728
Mr = 420.65Dx = 1.471 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 4137 reflections
a = 14.2030 (5) Åθ = 2.5–27.5°
b = 16.1935 (6) ŵ = 0.58 mm1
c = 16.9107 (6) ÅT = 173 K
β = 102.3720 (19)°Prism, colorless
V = 3799.1 (2) Å30.10 × 0.09 × 0.08 mm
Z = 8
Nonius KappaCCD diffractometer with APEXII CCD4296 independent reflections
Radiation source: fine-focus sealed tube3031 reflections with I > 2σ(I)
graphiteRint = 0.055
ω and φ scansθmax = 27.5°, θmin = 2.5°
Absorption correction: multi-scan (SORTAV; Blessing, 1997)h = −18→18
Tmin = 0.944, Tmax = 0.955k = −20→21
8110 measured reflectionsl = −21→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.071Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.141H-atom parameters constrained
S = 1.11w = 1/[σ2(Fo2) + (0.P)2 + 26.070P] where P = (Fo2 + 2Fc2)/3
4296 reflections(Δ/σ)max < 0.001
228 parametersΔρmax = 0.48 e Å3
0 restraintsΔρmin = −0.38 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.23160 (9)0.15298 (9)0.78649 (8)0.0533 (4)
Cl20.09485 (7)0.26270 (8)0.68962 (7)0.0474 (3)
Cl30.27140 (8)0.32851 (9)0.78607 (8)0.0513 (3)
P10.44011 (7)0.21369 (7)0.61189 (6)0.0253 (2)
O10.2270 (2)0.2435 (2)0.58675 (16)0.0383 (7)
O20.53687 (18)0.20089 (18)0.66214 (15)0.0312 (6)
N10.3656 (2)0.2181 (2)0.67847 (18)0.0264 (7)
H10.39040.20940.73010.032*
N20.4268 (2)0.2961 (2)0.5559 (2)0.0350 (8)
H20.38410.29500.50980.042*
N30.3973 (2)0.1417 (2)0.54605 (19)0.0288 (7)
H30.37500.15810.49590.035*
C10.2710 (3)0.2342 (2)0.6560 (2)0.0274 (8)
C20.2186 (3)0.2441 (3)0.7272 (2)0.0349 (10)
C30.4812 (3)0.3707 (3)0.5776 (3)0.0379 (10)
C40.5651 (3)0.3852 (3)0.5521 (3)0.0430 (11)
C50.6135 (4)0.4609 (3)0.5734 (3)0.0556 (15)
H50.67200.47220.55700.067*
C60.5758 (5)0.5179 (4)0.6178 (4)0.0661 (17)
H60.60820.56910.63060.079*
C70.4923 (6)0.5032 (4)0.6446 (4)0.0733 (19)
H70.46820.54320.67620.088*
C80.4446 (4)0.4301 (3)0.6250 (3)0.0565 (14)
H80.38690.41910.64310.068*
C90.6031 (4)0.3245 (3)0.5022 (3)0.0573 (14)
H9A0.65920.34780.48500.069*
H9B0.55310.31080.45440.069*
H9C0.62230.27430.53400.069*
C100.3923 (3)0.0558 (3)0.5609 (2)0.0284 (9)
C110.3738 (3)0.0013 (3)0.4949 (3)0.0319 (9)
C120.3716 (3)−0.0828 (3)0.5109 (3)0.0384 (10)
H120.3599−0.12070.46700.046*
C130.3860 (3)−0.1126 (3)0.5889 (3)0.0426 (11)
H130.3840−0.17030.59830.051*
C140.4031 (3)−0.0585 (3)0.6528 (3)0.0391 (10)
H140.4121−0.07900.70650.047*
C150.4074 (3)0.0250 (3)0.6399 (3)0.0345 (10)
H150.42060.06190.68460.041*
C160.3589 (3)0.0325 (3)0.4097 (3)0.0421 (11)
H16A0.3531−0.01430.37230.051*
H16B0.41410.06670.40400.051*
H16C0.29990.06570.39700.051*
U11U22U33U12U13U23
Cl10.0420 (6)0.0706 (9)0.0466 (7)−0.0022 (6)0.0080 (5)0.0227 (6)
Cl20.0251 (5)0.0693 (9)0.0452 (7)0.0064 (5)0.0018 (5)−0.0046 (6)
Cl30.0384 (6)0.0659 (8)0.0473 (7)0.0042 (6)0.0041 (5)−0.0278 (6)
P10.0242 (5)0.0315 (6)0.0181 (5)−0.0012 (4)0.0003 (4)0.0003 (4)
O10.0291 (15)0.057 (2)0.0239 (15)0.0055 (14)−0.0050 (12)0.0003 (14)
O20.0252 (14)0.0454 (18)0.0206 (14)0.0009 (13)−0.0009 (11)−0.0016 (13)
N10.0251 (16)0.0362 (19)0.0149 (15)0.0026 (14)−0.0026 (12)−0.0019 (14)
N20.0348 (19)0.038 (2)0.0263 (18)−0.0065 (16)−0.0060 (15)0.0049 (16)
N30.0327 (18)0.0355 (19)0.0160 (16)0.0003 (15)0.0004 (13)0.0005 (14)
C10.0258 (19)0.030 (2)0.0238 (19)−0.0002 (16)−0.0010 (15)−0.0006 (16)
C20.024 (2)0.049 (3)0.029 (2)0.0001 (19)0.0010 (17)−0.004 (2)
C30.044 (3)0.035 (2)0.030 (2)−0.004 (2)−0.0019 (19)0.0095 (19)
C40.043 (3)0.039 (3)0.041 (3)−0.005 (2)−0.003 (2)0.010 (2)
C50.062 (3)0.044 (3)0.048 (3)−0.013 (3)−0.018 (3)0.015 (3)
C60.092 (5)0.042 (3)0.054 (4)−0.012 (3)−0.008 (3)0.007 (3)
C70.120 (6)0.052 (4)0.046 (3)0.007 (4)0.012 (4)−0.008 (3)
C80.074 (4)0.049 (3)0.042 (3)0.001 (3)0.003 (3)−0.003 (3)
C90.057 (3)0.054 (3)0.060 (4)0.002 (3)0.013 (3)0.004 (3)
C100.0262 (19)0.031 (2)0.028 (2)−0.0005 (17)0.0059 (16)−0.0030 (17)
C110.025 (2)0.041 (2)0.030 (2)−0.0028 (18)0.0072 (17)−0.0067 (19)
C120.037 (2)0.038 (3)0.041 (3)−0.005 (2)0.009 (2)−0.010 (2)
C130.045 (3)0.033 (2)0.051 (3)−0.004 (2)0.012 (2)0.001 (2)
C140.038 (2)0.042 (3)0.038 (3)0.000 (2)0.010 (2)0.004 (2)
C150.038 (2)0.037 (2)0.027 (2)−0.0035 (19)0.0045 (18)0.0002 (19)
C160.049 (3)0.046 (3)0.031 (2)−0.009 (2)0.010 (2)−0.009 (2)
Cl1—C21.771 (5)C6—H60.9500
Cl2—C21.762 (4)C7—C81.369 (8)
Cl3—C21.762 (4)C7—H70.9500
P1—O21.468 (3)C8—H80.9500
P1—N21.623 (4)C9—H9A0.9800
P1—N31.637 (3)C9—H9B0.9800
P1—N11.704 (3)C9—H9C0.9800
O1—C11.213 (4)C10—C151.397 (6)
N1—C11.341 (5)C10—C111.404 (5)
N1—H10.8800C11—C121.390 (6)
N2—C31.439 (5)C11—C161.499 (6)
N2—H20.8800C12—C131.377 (6)
N3—C101.419 (5)C12—H120.9500
N3—H30.8800C13—C141.372 (6)
C1—C21.554 (6)C13—H130.9500
C3—C41.371 (6)C14—C151.373 (6)
C3—C81.420 (7)C14—H140.9500
C4—C51.413 (7)C15—H150.9500
C4—C91.472 (7)C16—H16A0.9800
C5—C61.369 (8)C16—H16B0.9800
C5—H50.9500C16—H16C0.9800
C6—C71.377 (9)
O2—P1—N2115.54 (18)C8—C7—C6119.1 (6)
O2—P1—N3117.28 (17)C8—C7—H7120.4
N2—P1—N3102.06 (17)C6—C7—H7120.4
O2—P1—N1105.08 (15)C7—C8—C3120.0 (6)
N2—P1—N1109.89 (18)C7—C8—H8120.0
N3—P1—N1106.68 (16)C3—C8—H8120.0
C1—N1—P1123.1 (3)C4—C9—H9A109.5
C1—N1—H1118.4C4—C9—H9B109.5
P1—N1—H1118.4H9A—C9—H9B109.5
C3—N2—P1123.6 (3)C4—C9—H9C109.5
C3—N2—H2118.2H9A—C9—H9C109.5
P1—N2—H2118.2H9B—C9—H9C109.5
C10—N3—P1127.1 (3)C15—C10—C11120.0 (4)
C10—N3—H3116.4C15—C10—N3121.0 (4)
P1—N3—H3116.4C11—C10—N3118.9 (4)
O1—C1—N1125.2 (4)C12—C11—C10118.0 (4)
O1—C1—C2120.1 (3)C12—C11—C16120.9 (4)
N1—C1—C2114.7 (3)C10—C11—C16121.1 (4)
C1—C2—Cl2110.2 (3)C13—C12—C11121.7 (4)
C1—C2—Cl3107.5 (3)C13—C12—H12119.2
Cl2—C2—Cl3110.0 (2)C11—C12—H12119.2
C1—C2—Cl1110.1 (3)C14—C13—C12119.7 (4)
Cl2—C2—Cl1108.8 (2)C14—C13—H13120.2
Cl3—C2—Cl1110.3 (2)C12—C13—H13120.2
C4—C3—C8120.6 (5)C13—C14—C15120.7 (4)
C4—C3—N2121.2 (4)C13—C14—H14119.7
C8—C3—N2118.1 (4)C15—C14—H14119.7
C3—C4—C5118.4 (5)C14—C15—C10120.0 (4)
C3—C4—C9121.0 (4)C14—C15—H15120.0
C5—C4—C9120.5 (5)C10—C15—H15120.0
C6—C5—C4119.9 (6)C11—C16—H16A109.5
C6—C5—H5120.0C11—C16—H16B109.5
C4—C5—H5120.0H16A—C16—H16B109.5
C5—C6—C7121.9 (6)C11—C16—H16C109.5
C5—C6—H6119.0H16A—C16—H16C109.5
C7—C6—H6119.0H16B—C16—H16C109.5
O2—P1—N1—C1176.0 (3)N2—C3—C4—C9−0.6 (7)
N2—P1—N1—C151.1 (4)C3—C4—C5—C6−0.6 (7)
N3—P1—N1—C1−58.9 (4)C9—C4—C5—C6178.1 (5)
O2—P1—N2—C3−29.9 (4)C4—C5—C6—C71.6 (8)
N3—P1—N2—C3−158.3 (4)C5—C6—C7—C8−1.2 (9)
N1—P1—N2—C388.8 (4)C6—C7—C8—C3−0.1 (8)
O2—P1—N3—C1051.5 (4)C4—C3—C8—C71.0 (8)
N2—P1—N3—C10178.8 (3)N2—C3—C8—C7−177.7 (5)
N1—P1—N3—C10−65.9 (4)P1—N3—C10—C1512.9 (6)
P1—N1—C1—O13.5 (6)P1—N3—C10—C11−165.8 (3)
P1—N1—C1—C2−174.1 (3)C15—C10—C11—C12−0.3 (6)
O1—C1—C2—Cl23.5 (5)N3—C10—C11—C12178.4 (4)
N1—C1—C2—Cl2−178.7 (3)C15—C10—C11—C16−179.1 (4)
O1—C1—C2—Cl3−116.4 (4)N3—C10—C11—C16−0.3 (6)
N1—C1—C2—Cl361.4 (4)C10—C11—C12—C130.7 (6)
O1—C1—C2—Cl1123.5 (4)C16—C11—C12—C13179.4 (4)
N1—C1—C2—Cl1−58.8 (4)C11—C12—C13—C14−0.1 (7)
P1—N2—C3—C493.0 (5)C12—C13—C14—C15−0.8 (7)
P1—N2—C3—C8−88.3 (5)C13—C14—C15—C101.2 (7)
C8—C3—C4—C5−0.6 (7)C11—C10—C15—C14−0.6 (6)
N2—C3—C4—C5178.1 (4)N3—C10—C15—C14−179.4 (4)
C8—C3—C4—C9−179.3 (5)
D—H···AD—HH···AD···AD—H···A
N1—H1···O2i0.881.902.768 (4)170.
N2—H2···O1ii0.882.112.957 (4)162.
N3—H3···O1ii0.882.393.149 (4)144.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O2i0.881.902.768 (4)170
N2—H2⋯O1ii0.882.112.957 (4)162
N3—H3⋯O1ii0.882.393.149 (4)144

Symmetry codes: (i) ; (ii) .

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1.  A short history of SHELX.

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Different cyclic motifs in phosphoric triamides containing a C(O)NHP(O)(NH)2 skeleton and an R(2)(2)(10) graph set in three new compounds: a database analysis of hydrogen-bond strengths based on motifs.

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Journal:  Acta Crystallogr C       Date:  2011-06-29       Impact factor: 1.172

3.  N,N'-Bis(2-chloro-benz-yl)-N''-(2,2,2-trichloro-acet-yl)phospho-ric triamide.

Authors:  Mehrdad Pourayoubi; Hassan Fadaei; Masood Parvez
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-16
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1.  Packing topology in crystals of proteins and small molecules: a comparison.

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