Literature DB >> 22091009

Bis(dimethyl-ammonium) 2,2'-(1,3,6,8-tetra-oxo-2,7-diaza-pyrene-2,7-di-yl)diacetate.

Lan-Ping Xu, Wen-Na Zhao, Lei Han.   

Abstract

The asymmetric unit of title compound, 2C(2)H(8)N(+)·C(18)H(8)N(2)O(8) (2-), comprises one crystallographically independent dimethyl-ammonium cation and half of a 2,2'-(1,3,6,8-tetra-oxo-2,7-diaza-pyrene-2,7-di-yl)diacetate dianion. The anion lies on an inversion centre and the two carboxyl-ate groups are in trans positions based on the naphthaleneteracarb-oxy-lic diimide group. The crystal packing is stabilized by N-H⋯O hydrogen bonds between cations and anions, as well as by π-π inter-actions between the naph-thaleneteracarb-oxy-lic diimide groups [centroid-centroid distance = 4.812 (3) Å].

Entities:  

Year:  2011        PMID: 22091009      PMCID: PMC3213430          DOI: 10.1107/S1600536811026511

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For organic supra­molecular solids, see: Pantos et al. (2007 ▶). For the prediction of organic crystal structures, see: Pigge (2011 ▶).

Experimental

Crystal data

2C2H8N+·C18H8N2O8 2− M = 472.45 Triclinic, a = 4.812 (3) Å b = 8.901 (5) Å c = 12.640 (7) Å α = 92.361 (9)° β = 91.512 (6)° γ = 99.789 (9)° V = 532.7 (5) Å3 Z = 1 Mo Kα radiation μ = 0.11 mm−1 T = 298 K 0.2 × 0.2 × 0.2 mm

Data collection

Rigaku Saturn724+ diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2008 ▶) T min = 0.976, T max = 0.983 4207 measured reflections 2298 independent reflections 1969 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.114 S = 1.04 2298 reflections 202 parameters All H-atom parameters refined Δρmax = 0.50 e Å−3 Δρmin = −0.23 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2008 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811026511/om2439sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811026511/om2439Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811026511/om2439Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2C2H8N+·C18H8N2O82Z = 1
Mr = 472.45F(000) = 248
Triclinic, P1Dx = 1.473 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 4.812 (3) ÅCell parameters from 1620 reflections
b = 8.901 (5) Åθ = 2.3–27.5°
c = 12.640 (7) ŵ = 0.11 mm1
α = 92.361 (9)°T = 298 K
β = 91.512 (6)°Prism, colorless
γ = 99.789 (9)°0.2 × 0.2 × 0.2 mm
V = 532.7 (5) Å3
Rigaku Saturn724+ diffractometer2298 independent reflections
Radiation source: fine-focus sealed tube1969 reflections with I > 2σ(I)
ConfocalRint = 0.018
Detector resolution: 28.57 pixels mm-1θmax = 27.5°, θmin = 2.9°
ω scansh = −6→6
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2008)k = −11→11
Tmin = 0.976, Tmax = 0.983l = −16→16
4207 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.114All H-atom parameters refined
S = 1.04w = 1/[σ2(Fo2) + (0.069P)2 + 0.126P] where P = (Fo2 + 2Fc2)/3
2298 reflections(Δ/σ)max < 0.001
202 parametersΔρmax = 0.50 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.4577 (2)0.61234 (11)0.08100 (7)0.0248 (3)
O20.1971 (2)0.79037 (11)0.12376 (7)0.0252 (3)
O30.63240 (19)1.06673 (10)0.27584 (7)0.0179 (2)
O4−0.2062 (2)1.40383 (10)0.63370 (7)0.0207 (2)
N10.4256 (2)0.83103 (11)0.32377 (7)0.0136 (2)
N2−0.0973 (3)0.68928 (13)−0.06090 (8)0.0204 (3)
H50.030 (4)0.711 (2)0.0042 (15)0.038 (5)*
H6−0.248 (5)0.615 (2)−0.0421 (16)0.046 (6)*
C10.3916 (3)0.71603 (14)0.14037 (9)0.0180 (3)
C20.5758 (3)0.75754 (15)0.24241 (9)0.0160 (3)
H10.736 (4)0.827 (2)0.2294 (13)0.029 (4)*
H20.634 (3)0.6701 (19)0.2725 (12)0.022 (4)*
C30.4599 (2)0.99015 (14)0.32887 (9)0.0136 (3)
C40.2780 (3)1.06025 (13)0.40288 (9)0.0130 (3)
C50.2994 (3)1.21692 (14)0.41186 (9)0.0151 (3)
H30.429 (4)1.2802 (18)0.3699 (13)0.023 (4)*
C60.1307 (3)1.28406 (14)0.48269 (9)0.0159 (3)
H40.150 (3)1.3937 (19)0.4859 (12)0.023 (4)*
C7−0.0576 (3)1.19431 (13)0.54381 (9)0.0131 (3)
C8−0.2309 (3)1.26571 (14)0.62007 (9)0.0147 (3)
C90.0849 (2)0.96643 (13)0.46443 (8)0.0121 (3)
C100.0565 (3)0.62531 (17)−0.14666 (11)0.0257 (3)
H7−0.077 (4)0.587 (2)−0.2030 (15)0.034 (5)*
H80.156 (4)0.544 (2)−0.1197 (13)0.030 (4)*
H90.190 (4)0.711 (2)−0.1699 (15)0.042 (5)*
C11−0.1980 (4)0.83071 (19)−0.09026 (12)0.0301 (3)
H12−0.038 (4)0.910 (2)−0.1036 (14)0.033 (5)*
H11−0.315 (4)0.804 (2)−0.1546 (17)0.046 (5)*
H10−0.309 (4)0.866 (2)−0.0336 (16)0.042 (5)*
U11U22U33U12U13U23
O10.0250 (5)0.0264 (5)0.0221 (5)0.0038 (4)0.0058 (4)−0.0082 (4)
O20.0258 (5)0.0310 (6)0.0201 (5)0.0102 (4)−0.0030 (4)−0.0031 (4)
O30.0183 (5)0.0194 (5)0.0164 (4)0.0034 (4)0.0055 (3)0.0028 (3)
O40.0297 (5)0.0129 (4)0.0205 (4)0.0063 (4)0.0062 (4)−0.0011 (3)
N10.0163 (5)0.0152 (5)0.0102 (5)0.0054 (4)0.0016 (4)−0.0011 (4)
N20.0210 (6)0.0233 (6)0.0165 (5)0.0028 (5)−0.0013 (4)0.0024 (4)
C10.0181 (6)0.0202 (6)0.0150 (6)0.0012 (5)0.0045 (5)−0.0003 (4)
C20.0177 (6)0.0174 (6)0.0144 (5)0.0071 (5)0.0042 (5)−0.0015 (4)
C30.0144 (6)0.0165 (6)0.0103 (5)0.0043 (5)−0.0016 (4)0.0008 (4)
C40.0144 (6)0.0155 (6)0.0098 (5)0.0044 (5)−0.0002 (4)0.0005 (4)
C50.0161 (6)0.0153 (6)0.0137 (5)0.0018 (5)0.0018 (4)0.0028 (4)
C60.0202 (6)0.0120 (6)0.0158 (6)0.0039 (5)0.0004 (5)0.0004 (4)
C70.0153 (6)0.0139 (6)0.0108 (5)0.0045 (5)−0.0005 (4)0.0000 (4)
C80.0173 (6)0.0153 (6)0.0122 (5)0.0052 (5)−0.0006 (4)0.0008 (4)
C90.0134 (6)0.0130 (6)0.0101 (5)0.0033 (5)−0.0015 (4)0.0005 (4)
C100.0313 (8)0.0248 (7)0.0201 (6)0.0023 (7)0.0041 (6)0.0003 (5)
C110.0319 (8)0.0319 (8)0.0293 (7)0.0117 (7)0.0000 (6)0.0078 (6)
O1—C11.2535 (16)C4—C91.4119 (18)
O2—C11.2529 (17)C5—C61.4061 (17)
O3—C31.2156 (15)C5—H30.954 (18)
O4—C81.2195 (16)C6—C71.3775 (19)
N1—C8i1.3909 (17)C6—H40.963 (16)
N1—C31.3963 (17)C7—C9i1.4135 (18)
N1—C21.4669 (15)C7—C81.4834 (16)
N2—C101.4771 (18)C8—N1i1.3909 (17)
N2—C111.4811 (19)C9—C9i1.412 (2)
N2—H51.006 (19)C9—C7i1.4135 (18)
N2—H60.94 (2)C10—H70.958 (19)
C1—C21.5410 (18)C10—H80.999 (18)
C2—H10.924 (18)C10—H90.97 (2)
C2—H20.961 (16)C11—H120.977 (19)
C3—C41.4872 (16)C11—H110.98 (2)
C4—C51.3804 (19)C11—H100.98 (2)
C8i—N1—C3125.18 (10)C6—C5—H3119.6 (9)
C8i—N1—C2116.13 (10)C7—C6—C5120.39 (12)
C3—N1—C2118.08 (10)C7—C6—H4121.9 (9)
C10—N2—C11112.51 (11)C5—C6—H4117.7 (9)
C10—N2—H5108.9 (11)C6—C7—C9i120.41 (11)
C11—N2—H5109.7 (10)C6—C7—C8120.22 (11)
C10—N2—H6109.1 (13)C9i—C7—C8119.36 (11)
C11—N2—H6110.9 (12)O4—C8—N1i120.54 (11)
H5—N2—H6105.5 (16)O4—C8—C7121.96 (12)
O2—C1—O1126.66 (12)N1i—C8—C7117.50 (11)
O2—C1—C2117.51 (11)C4—C9—C9i119.72 (14)
O1—C1—C2115.81 (11)C4—C9—C7i121.20 (11)
N1—C2—C1111.40 (10)C9i—C9—C7i119.08 (14)
N1—C2—H1106.2 (10)N2—C10—H7107.9 (11)
C1—C2—H1110.7 (11)N2—C10—H8110.6 (10)
N1—C2—H2107.6 (10)H7—C10—H8111.8 (14)
C1—C2—H2112.6 (10)N2—C10—H9105.1 (11)
H1—C2—H2108.1 (14)H7—C10—H9110.1 (15)
O3—C3—N1121.18 (11)H8—C10—H9111.0 (14)
O3—C3—C4122.08 (11)N2—C11—H12110.3 (11)
N1—C3—C4116.74 (11)N2—C11—H11106.1 (12)
C5—C4—C9120.10 (11)H12—C11—H11110.3 (15)
C5—C4—C3119.99 (11)N2—C11—H10110.0 (11)
C9—C4—C3119.92 (11)H12—C11—H10109.6 (15)
C4—C5—C6120.29 (12)H11—C11—H10110.4 (16)
C4—C5—H3120.1 (9)
C8i—N1—C2—C179.11 (13)C3—C4—C5—C6−179.17 (10)
C3—N1—C2—C1−92.46 (13)C4—C5—C6—C70.01 (19)
O2—C1—C2—N123.91 (16)C5—C6—C7—C9i−0.44 (19)
O1—C1—C2—N1−157.63 (11)C5—C6—C7—C8178.71 (10)
C8i—N1—C3—O3−178.82 (10)C6—C7—C8—O4−2.53 (19)
C2—N1—C3—O3−8.08 (17)C9i—C7—C8—O4176.63 (11)
C8i—N1—C3—C41.85 (17)C6—C7—C8—N1i177.33 (10)
C2—N1—C3—C4172.59 (9)C9i—C7—C8—N1i−3.50 (17)
O3—C3—C4—C50.90 (18)C5—C4—C9—C9i−0.3 (2)
N1—C3—C4—C5−179.78 (10)C3—C4—C9—C9i179.21 (12)
O3—C3—C4—C9−178.65 (10)C5—C4—C9—C7i179.58 (10)
N1—C3—C4—C90.67 (17)C3—C4—C9—C7i−0.87 (18)
C9—C4—C5—C60.38 (19)
D—H···AD—HH···AD···AD—H···A
N2—H5···O21.006 (19)1.76 (2)2.7358 (18)163.5 (16)
N2—H6···O1ii0.94 (2)2.13 (2)2.8419 (18)131.8 (17)
N2—H6···O1iii0.94 (2)2.13 (2)2.935 (2)142.9 (17)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H5⋯O21.006 (19)1.76 (2)2.7358 (18)163.5 (16)
N2—H6⋯O1i0.94 (2)2.13 (2)2.8419 (18)131.8 (17)
N2—H6⋯O1ii0.94 (2)2.13 (2)2.935 (2)142.9 (17)

Symmetry codes: (i) ; (ii) .

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