Literature DB >> 22798844

Bis(dimethyl-ammonium) 3,3'-dicarb-oxy-5,5'-(5,7,12,14-tetra-oxo-6,13-diaza-tetra-cyclo-[6.6.2.0(4,16).0(11,15)]hexa-deca-1,3,8,10,15-penta-ene-6,13-di-yl)dibenzoate dihydrate.

Lan-Ping Xu, Lan Qin, Lei Han.   

Abstract

The title compound, 2C(2)H(8)N(+)·C(30)H(12)N(2)O(12) (2-)·2H(2)O, comprises dimethyl-ammonium cations, 3,3'-dicarb-oxy-5,5'-(5,7,12,14-tetra-oxo-6,13-diaza-tetra-cyclo-[6.6.2.0(4,16).0(11,15)]hexa-deca-1,3,8,10,15-penta-ene-6,13-di-yl)dibenzoate dianions and water mol-ecules. The dianion is situated on a crystallographic inversion centre. Two very strong symmetry-restricted O⋯H⋯O hydrogen bonds are present which are situated about the crystallographic inversion centres. In one of these hydrogen bonds, the H atom is situated at its centre, while in the other one the H atom is disordered about its centre. Both H atoms are involved in the chain-like C(2) (2)(16) motif, and not in a more common motif R(2) (2)(8) that is composed of a pair of hydrogen carboxyl-ates with the H atoms situated about the centre between the pair of O atoms. In the crystal, inter-action of these hydrogen bonds results in formation of anionic layers of dianions parallel to (-111). The water mol-ecules donate their H atoms to one of two of the carboxyl-ate O atoms, forming strong hydrogen bonds. The dimethyl-ammonium donates a bifurcated hydrogen bond to an oxo group of the dianion, forming weak hydrogen bonds. All the hydrogen bonds form a three-dimensional hydrogen-bonded network.

Entities:  

Year:  2012        PMID: 22798844      PMCID: PMC3393979          DOI: 10.1107/S1600536812025470

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For organic supra­molecular solids, see: Pantos et al. (2007 ▶). For multi-component mol­ecular crystals or organic co-crystals, see: Bond (2007 ▶); MacGillivray (2008 ▶); Yan et al. (2011 ▶). For prediction of organic crystal structures, see: Pigge (2011 ▶). For organic structures based on naphthalaleneteracarb­oxy­lic diimide derivatives, see: Xu et al. (2011 ▶). For hydrogen carboxyl­ates forming chain-like motifs with very strong O—H⋯O hydrogen bonds, see: Foces-Foces et al. (1996 ▶); Hsu et al. (2006 ▶); Aciro et al. (2009 ▶). For in situ hydrolysis of dimethyl­formamide mol­ecules, see: Jain et al. (2008 ▶). For classification of hydrogen bonds, see: Desiraju & Steiner (1999 ▶). For graph-set motifs, see: Etter et al. (1990 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶).

Experimental

Crystal data

2C2H8N+·C30H12N2O12 2−·2H2O M = 720.64 Monoclinic, a = 10.428 (13) Å b = 8.651 (10) Å c = 18.40 (2) Å β = 91.956 (16)° V = 1659 (4) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 293 K 0.20 × 0.20 × 0.20 mm

Data collection

Rigaku Saturn70 diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2008 ▶) T min = 0.788, T max = 1.000 12286 measured reflections 3780 independent reflections 2137 reflections with I > 2σ(I) R int = 0.051

Refinement

R[F 2 > 2σ(F 2)] = 0.081 wR(F 2) = 0.266 S = 1.01 3780 reflections 248 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.43 e Å−3 Δρmin = −0.36 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2008 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812025470/fb2246sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812025470/fb2246Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812025470/fb2246Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2C2H8N+·C30H12N2O122·2H2OF(000) = 752
Mr = 720.64Dx = 1.443 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 3435 reflections
a = 10.428 (13) Åθ = 2.2–27.6°
b = 8.651 (10) ŵ = 0.11 mm1
c = 18.40 (2) ÅT = 293 K
β = 91.956 (16)°Cube-like, colourless
V = 1659 (4) Å30.20 × 0.20 × 0.20 mm
Z = 2
Rigaku Saturn70 diffractometer3780 independent reflections
Radiation source: fine-focus sealed tube2137 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.051
Detector resolution: 28.5714 pixels mm-1θmax = 27.5°, θmin = 3.2°
CCD_Profile_fitting scansh = −13→13
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2008)k = −11→11
Tmin = 0.788, Tmax = 1.000l = −23→21
12286 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.081Hydrogen site location: difference Fourier map
wR(F2) = 0.266H atoms treated by a mixture of independent and constrained refinement
S = 1.01w = 1/[σ2(Fo2) + (0.1621P)2] where P = (Fo2 + 2Fc2)/3
3780 reflections(Δ/σ)max < 0.001
248 parametersΔρmax = 0.43 e Å3
3 restraintsΔρmin = −0.36 e Å3
0 constraints
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
N10.6155 (2)0.9195 (3)0.17822 (12)0.0435 (6)
C30.7165 (3)0.7875 (3)0.39335 (14)0.0430 (6)
H3A0.73800.75880.44090.052*
O60.7771 (2)0.7754 (3)0.13324 (12)0.0697 (7)
C60.7610 (3)0.9351 (3)0.28630 (15)0.0473 (7)
H6A0.81231.00430.26170.057*
C120.5244 (2)0.9859 (3)0.03593 (13)0.0402 (6)
C70.6535 (3)0.8733 (3)0.25224 (13)0.0415 (6)
C80.5761 (3)0.7673 (3)0.28718 (14)0.0425 (6)
H8A0.50400.72590.26330.051*
O50.4661 (3)1.0808 (3)0.22384 (12)0.0720 (8)
O30.9850 (2)1.0402 (3)0.36519 (13)0.0745 (8)
C140.5140 (3)1.0235 (3)0.17045 (14)0.0459 (7)
C40.7929 (3)0.8936 (3)0.35776 (14)0.0442 (7)
C130.4669 (3)1.0575 (3)0.09499 (14)0.0444 (7)
O10.5588 (3)0.5959 (3)0.46612 (13)0.0822 (9)
H10.50000.50000.50000.17 (4)*
C20.6085 (3)0.7243 (3)0.35853 (14)0.0409 (6)
C90.6833 (3)0.8543 (4)0.12086 (15)0.0473 (7)
C10.5278 (3)0.6114 (4)0.39882 (16)0.0538 (8)
C100.6314 (3)0.8857 (3)0.04610 (14)0.0452 (7)
C150.3628 (3)1.1555 (4)0.08394 (16)0.0569 (8)
H15A0.32551.20330.12320.068*
C50.9058 (3)0.9650 (4)0.39769 (17)0.0555 (8)
C110.6858 (3)0.8183 (4)−0.01297 (16)0.0590 (8)
H11A0.75650.7538−0.00580.071*
N20.3624 (5)0.1938 (5)0.3549 (2)0.1119 (15)
H2A0.40890.27490.34010.134*
H2B0.34120.13750.31520.134*
C160.2451 (4)0.2531 (6)0.3843 (3)0.0923 (13)
H16A0.19290.29810.34590.138*
H16B0.26560.33030.42030.138*
H16C0.19900.17010.40620.138*
C170.4449 (5)0.0987 (6)0.4027 (3)0.1022 (15)
H17A0.51210.05410.37520.153*
H17B0.39500.01780.42350.153*
H17C0.48190.16190.44090.153*
O20.4408 (3)0.5385 (3)0.36690 (14)0.0844 (10)
O40.9083 (2)0.9425 (3)0.46707 (12)0.0759 (8)
H20.965 (5)1.036 (6)0.500 (3)0.040 (16)*0.50
O70.6740 (4)0.5344 (6)0.7689 (2)0.1276 (14)
H30.620 (6)0.552 (9)0.725 (2)0.191*
H40.611 (6)0.540 (9)0.808 (3)0.191*
U11U22U33U12U13U23
N10.0534 (13)0.0541 (13)0.0224 (11)−0.0007 (10)−0.0079 (9)0.0064 (9)
C30.0529 (15)0.0514 (15)0.0242 (13)−0.0022 (12)−0.0059 (11)0.0043 (11)
O60.0693 (14)0.1023 (18)0.0368 (13)0.0242 (13)−0.0068 (10)0.0118 (12)
C60.0531 (15)0.0600 (17)0.0282 (14)−0.0161 (13)−0.0071 (11)0.0086 (12)
C120.0476 (14)0.0478 (14)0.0249 (14)−0.0043 (12)−0.0036 (11)0.0055 (10)
C70.0525 (14)0.0500 (15)0.0214 (13)−0.0042 (12)−0.0082 (11)0.0021 (10)
C80.0495 (14)0.0488 (15)0.0285 (14)−0.0065 (12)−0.0082 (11)0.0037 (11)
O50.0876 (17)0.1009 (19)0.0271 (12)0.0284 (14)−0.0023 (11)−0.0034 (11)
O30.0663 (14)0.111 (2)0.0455 (14)−0.0401 (14)−0.0119 (11)0.0173 (13)
C140.0555 (16)0.0581 (16)0.0238 (14)−0.0009 (13)−0.0035 (11)0.0045 (11)
C40.0467 (14)0.0576 (16)0.0277 (14)−0.0103 (12)−0.0087 (11)0.0040 (11)
C130.0514 (15)0.0588 (16)0.0226 (13)−0.0014 (13)−0.0049 (11)0.0043 (11)
O10.1009 (19)0.107 (2)0.0378 (13)−0.0553 (16)−0.0163 (13)0.0252 (13)
C20.0485 (14)0.0443 (14)0.0294 (14)−0.0070 (11)−0.0032 (11)0.0035 (11)
C90.0530 (15)0.0601 (17)0.0286 (14)0.0031 (14)−0.0032 (12)0.0076 (12)
C10.0645 (18)0.0637 (18)0.0327 (16)−0.0190 (15)−0.0064 (13)0.0127 (13)
C100.0502 (15)0.0582 (16)0.0269 (14)−0.0009 (13)−0.0047 (11)0.0084 (11)
C150.0705 (19)0.074 (2)0.0262 (14)0.0165 (16)−0.0010 (13)−0.0003 (13)
C50.0581 (18)0.075 (2)0.0327 (16)−0.0185 (16)−0.0135 (13)0.0072 (14)
C110.0644 (18)0.079 (2)0.0332 (16)0.0206 (16)−0.0042 (13)0.0068 (14)
N20.180 (4)0.084 (2)0.075 (3)0.040 (3)0.051 (3)0.013 (2)
C160.083 (3)0.096 (3)0.098 (4)−0.009 (3)0.002 (2)0.004 (2)
C170.099 (3)0.109 (3)0.098 (4)0.019 (3)−0.007 (3)−0.019 (3)
O20.0893 (18)0.106 (2)0.0561 (16)−0.0564 (16)−0.0266 (13)0.0311 (14)
O40.0778 (16)0.115 (2)0.0328 (12)−0.0436 (15)−0.0197 (11)0.0107 (12)
O70.128 (3)0.165 (4)0.090 (3)−0.030 (3)0.017 (2)−0.026 (3)
N1—C141.393 (4)C2—C11.501 (4)
N1—C91.408 (4)C9—C101.486 (4)
N1—C71.461 (3)C1—O21.237 (4)
C3—C21.389 (4)C10—C111.373 (4)
C3—C41.394 (4)C15—C11i1.403 (4)
C3—H3A0.9300C15—H15A0.9300
O6—C91.208 (4)C5—O41.291 (4)
C6—C71.374 (4)C11—C15i1.403 (4)
C6—C41.393 (4)C11—H11A0.9300
C6—H6A0.9300N2—C161.448 (6)
C12—C131.403 (4)N2—C171.463 (6)
C12—C101.421 (4)N2—H2A0.9000
C12—C12i1.421 (5)N2—H2B0.9000
C7—C81.393 (4)C16—H16A0.9600
C8—C21.395 (4)C16—H16B0.9600
C8—H8A0.9300C16—H16C0.9600
O5—C141.222 (4)C17—H17A0.9600
O3—C51.224 (4)C17—H17B0.9600
C14—C131.486 (4)C17—H17C0.9600
C4—C51.499 (4)O4—H21.15 (6)
C13—C151.387 (4)O7—H30.98 (2)
O1—C11.276 (4)O7—H40.98 (2)
O1—H11.216 (2)
C14—N1—C9125.5 (2)O2—C1—C2120.8 (3)
C14—N1—C7117.0 (2)O1—C1—C2114.8 (2)
C9—N1—C7117.5 (2)C11—C10—C12119.9 (2)
C2—C3—C4120.7 (2)C11—C10—C9120.5 (3)
C2—C3—H3A119.7C12—C10—C9119.5 (3)
C4—C3—H3A119.7C13—C15—C11i119.4 (3)
C7—C6—C4119.7 (3)C13—C15—H15A120.3
C7—C6—H6A120.2C11i—C15—H15A120.3
C4—C6—H6A120.2O3—C5—O4124.9 (3)
C13—C12—C10121.5 (2)O3—C5—C4120.8 (3)
C13—C12—C12i119.8 (3)O4—C5—C4114.3 (3)
C10—C12—C12i118.8 (3)C10—C11—C15i121.5 (3)
C6—C7—C8121.5 (2)C10—C11—H11A119.3
C6—C7—N1120.6 (2)C15i—C11—H11A119.3
C8—C7—N1117.9 (2)C16—N2—C17117.5 (4)
C7—C8—C2119.0 (2)C16—N2—H2A107.9
C7—C8—H8A120.5C17—N2—H2A107.9
C2—C8—H8A120.5C16—N2—H2B107.9
O5—C14—N1120.6 (3)C17—N2—H2B107.9
O5—C14—C13122.7 (3)H2A—N2—H2B107.2
N1—C14—C13116.7 (2)N2—C16—H16A109.5
C6—C4—C3119.4 (2)N2—C16—H16B109.5
C6—C4—C5121.0 (3)H16A—C16—H16B109.5
C3—C4—C5119.6 (2)N2—C16—H16C109.5
C15—C13—C12120.6 (3)H16A—C16—H16C109.5
C15—C13—C14119.3 (3)H16B—C16—H16C109.5
C12—C13—C14120.0 (3)N2—C17—H17A109.5
C1—O1—H1117.0 (2)N2—C17—H17B109.5
C3—C2—C8119.7 (2)H17A—C17—H17B109.5
C3—C2—C1119.2 (2)N2—C17—H17C109.5
C8—C2—C1121.1 (2)H17A—C17—H17C109.5
O6—C9—N1120.6 (3)H17B—C17—H17C109.5
O6—C9—C10123.0 (3)C5—O4—H2114 (3)
N1—C9—C10116.4 (2)H3—O7—H4102 (4)
O2—C1—O1124.4 (3)
D—H···AD—HH···AD···AD—H···A
O1—H1···O1ii1.22 (1)1.22 (1)2.432 (5)180 (1)
O4—H2···O4iii1.15 (6)1.45 (5)2.441 (5)139 (4)
N2—H2B···O5iv0.902.222.850 (5)127
O7—H3···O2ii0.98 (2)1.95 (5)2.805 (6)144 (6)
O7—H4···O3v0.98 (2)1.85 (4)2.771 (6)154 (7)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯O1i 1.22 (1)1.22 (1)2.432 (5)180 (1)
O4—H2⋯O4ii 1.15 (6)1.45 (5)2.441 (5)139 (4)
N2—H2B⋯O5iii 0.902.222.850 (5)127
O7—H3⋯O2i 0.98 (2)1.95 (5)2.805 (6)144 (6)
O7—H4⋯O3iv 0.98 (2)1.85 (4)2.771 (6)154 (7)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  9 in total

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8.  Order-disorder antiferroelectric phase transition in a hybrid inorganic-organic framework with the perovskite architecture.

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9.  Bis(dimethyl-ammonium) 2,2'-(1,3,6,8-tetra-oxo-2,7-diaza-pyrene-2,7-di-yl)diacetate.

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  9 in total

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