| Literature DB >> 22798844 |
Lan-Ping Xu, Lan Qin, Lei Han.
Abstract
The title compound, 2C(2)H(8)N(+)·C(30)H(12)N(2)O(12) (2-)·2H(2)O, comprises dimethyl-ammonium cations, 3,3'-dicarb-oxy-5,5'-(5,7,12,14-tetra-oxo-6,13-diaza-tetra-cyclo-[6.6.2.0(4,16).0(11,15)]hexa-deca-1,3,8,10,15-penta-ene-6,13-di-yl)dibenzoate dianions and water mol-ecules. The dianion is situated on a crystallographic inversion centre. Two very strong symmetry-restricted O⋯H⋯O hydrogen bonds are present which are situated about the crystallographic inversion centres. In one of these hydrogen bonds, the H atom is situated at its centre, while in the other one the H atom is disordered about its centre. Both H atoms are involved in the chain-like C(2) (2)(16) motif, and not in a more common motif R(2) (2)(8) that is composed of a pair of hydrogen carboxyl-ates with the H atoms situated about the centre between the pair of O atoms. In the crystal, inter-action of these hydrogen bonds results in formation of anionic layers of dianions parallel to (-111). The water mol-ecules donate their H atoms to one of two of the carboxyl-ate O atoms, forming strong hydrogen bonds. The dimethyl-ammonium donates a bifurcated hydrogen bond to an oxo group of the dianion, forming weak hydrogen bonds. All the hydrogen bonds form a three-dimensional hydrogen-bonded network.Entities:
Year: 2012 PMID: 22798844 PMCID: PMC3393979 DOI: 10.1107/S1600536812025470
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| 2C2H8N+·C30H12N2O122−·2H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 3435 reflections |
| θ = 2.2–27.6° | |
| µ = 0.11 mm−1 | |
| β = 91.956 (16)° | Cube-like, colourless |
| 0.20 × 0.20 × 0.20 mm | |
| Rigaku Saturn70 diffractometer | 3780 independent reflections |
| Radiation source: fine-focus sealed tube | 2137 reflections with |
| Graphite monochromator | |
| Detector resolution: 28.5714 pixels mm-1 | θmax = 27.5°, θmin = 3.2° |
| CCD_Profile_fitting scans | |
| Absorption correction: multi-scan ( | |
| 12286 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: difference Fourier map | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3780 reflections | (Δ/σ)max < 0.001 |
| 248 parameters | Δρmax = 0.43 e Å−3 |
| 3 restraints | Δρmin = −0.36 e Å−3 |
| 0 constraints |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Occ. (<1) | |||||
| N1 | 0.6155 (2) | 0.9195 (3) | 0.17822 (12) | 0.0435 (6) | |
| C3 | 0.7165 (3) | 0.7875 (3) | 0.39335 (14) | 0.0430 (6) | |
| H3A | 0.7380 | 0.7588 | 0.4409 | 0.052* | |
| O6 | 0.7771 (2) | 0.7754 (3) | 0.13324 (12) | 0.0697 (7) | |
| C6 | 0.7610 (3) | 0.9351 (3) | 0.28630 (15) | 0.0473 (7) | |
| H6A | 0.8123 | 1.0043 | 0.2617 | 0.057* | |
| C12 | 0.5244 (2) | 0.9859 (3) | 0.03593 (13) | 0.0402 (6) | |
| C7 | 0.6535 (3) | 0.8733 (3) | 0.25224 (13) | 0.0415 (6) | |
| C8 | 0.5761 (3) | 0.7673 (3) | 0.28718 (14) | 0.0425 (6) | |
| H8A | 0.5040 | 0.7259 | 0.2633 | 0.051* | |
| O5 | 0.4661 (3) | 1.0808 (3) | 0.22384 (12) | 0.0720 (8) | |
| O3 | 0.9850 (2) | 1.0402 (3) | 0.36519 (13) | 0.0745 (8) | |
| C14 | 0.5140 (3) | 1.0235 (3) | 0.17045 (14) | 0.0459 (7) | |
| C4 | 0.7929 (3) | 0.8936 (3) | 0.35776 (14) | 0.0442 (7) | |
| C13 | 0.4669 (3) | 1.0575 (3) | 0.09499 (14) | 0.0444 (7) | |
| O1 | 0.5588 (3) | 0.5959 (3) | 0.46612 (13) | 0.0822 (9) | |
| H1 | 0.5000 | 0.5000 | 0.5000 | 0.17 (4)* | |
| C2 | 0.6085 (3) | 0.7243 (3) | 0.35853 (14) | 0.0409 (6) | |
| C9 | 0.6833 (3) | 0.8543 (4) | 0.12086 (15) | 0.0473 (7) | |
| C1 | 0.5278 (3) | 0.6114 (4) | 0.39882 (16) | 0.0538 (8) | |
| C10 | 0.6314 (3) | 0.8857 (3) | 0.04610 (14) | 0.0452 (7) | |
| C15 | 0.3628 (3) | 1.1555 (4) | 0.08394 (16) | 0.0569 (8) | |
| H15A | 0.3255 | 1.2033 | 0.1232 | 0.068* | |
| C5 | 0.9058 (3) | 0.9650 (4) | 0.39769 (17) | 0.0555 (8) | |
| C11 | 0.6858 (3) | 0.8183 (4) | −0.01297 (16) | 0.0590 (8) | |
| H11A | 0.7565 | 0.7538 | −0.0058 | 0.071* | |
| N2 | 0.3624 (5) | 0.1938 (5) | 0.3549 (2) | 0.1119 (15) | |
| H2A | 0.4089 | 0.2749 | 0.3401 | 0.134* | |
| H2B | 0.3412 | 0.1375 | 0.3152 | 0.134* | |
| C16 | 0.2451 (4) | 0.2531 (6) | 0.3843 (3) | 0.0923 (13) | |
| H16A | 0.1929 | 0.2981 | 0.3459 | 0.138* | |
| H16B | 0.2656 | 0.3303 | 0.4203 | 0.138* | |
| H16C | 0.1990 | 0.1701 | 0.4062 | 0.138* | |
| C17 | 0.4449 (5) | 0.0987 (6) | 0.4027 (3) | 0.1022 (15) | |
| H17A | 0.5121 | 0.0541 | 0.3752 | 0.153* | |
| H17B | 0.3950 | 0.0178 | 0.4235 | 0.153* | |
| H17C | 0.4819 | 0.1619 | 0.4409 | 0.153* | |
| O2 | 0.4408 (3) | 0.5385 (3) | 0.36690 (14) | 0.0844 (10) | |
| O4 | 0.9083 (2) | 0.9425 (3) | 0.46707 (12) | 0.0759 (8) | |
| H2 | 0.965 (5) | 1.036 (6) | 0.500 (3) | 0.040 (16)* | 0.50 |
| O7 | 0.6740 (4) | 0.5344 (6) | 0.7689 (2) | 0.1276 (14) | |
| H3 | 0.620 (6) | 0.552 (9) | 0.725 (2) | 0.191* | |
| H4 | 0.611 (6) | 0.540 (9) | 0.808 (3) | 0.191* |
| N1 | 0.0534 (13) | 0.0541 (13) | 0.0224 (11) | −0.0007 (10) | −0.0079 (9) | 0.0064 (9) |
| C3 | 0.0529 (15) | 0.0514 (15) | 0.0242 (13) | −0.0022 (12) | −0.0059 (11) | 0.0043 (11) |
| O6 | 0.0693 (14) | 0.1023 (18) | 0.0368 (13) | 0.0242 (13) | −0.0068 (10) | 0.0118 (12) |
| C6 | 0.0531 (15) | 0.0600 (17) | 0.0282 (14) | −0.0161 (13) | −0.0071 (11) | 0.0086 (12) |
| C12 | 0.0476 (14) | 0.0478 (14) | 0.0249 (14) | −0.0043 (12) | −0.0036 (11) | 0.0055 (10) |
| C7 | 0.0525 (14) | 0.0500 (15) | 0.0214 (13) | −0.0042 (12) | −0.0082 (11) | 0.0021 (10) |
| C8 | 0.0495 (14) | 0.0488 (15) | 0.0285 (14) | −0.0065 (12) | −0.0082 (11) | 0.0037 (11) |
| O5 | 0.0876 (17) | 0.1009 (19) | 0.0271 (12) | 0.0284 (14) | −0.0023 (11) | −0.0034 (11) |
| O3 | 0.0663 (14) | 0.111 (2) | 0.0455 (14) | −0.0401 (14) | −0.0119 (11) | 0.0173 (13) |
| C14 | 0.0555 (16) | 0.0581 (16) | 0.0238 (14) | −0.0009 (13) | −0.0035 (11) | 0.0045 (11) |
| C4 | 0.0467 (14) | 0.0576 (16) | 0.0277 (14) | −0.0103 (12) | −0.0087 (11) | 0.0040 (11) |
| C13 | 0.0514 (15) | 0.0588 (16) | 0.0226 (13) | −0.0014 (13) | −0.0049 (11) | 0.0043 (11) |
| O1 | 0.1009 (19) | 0.107 (2) | 0.0378 (13) | −0.0553 (16) | −0.0163 (13) | 0.0252 (13) |
| C2 | 0.0485 (14) | 0.0443 (14) | 0.0294 (14) | −0.0070 (11) | −0.0032 (11) | 0.0035 (11) |
| C9 | 0.0530 (15) | 0.0601 (17) | 0.0286 (14) | 0.0031 (14) | −0.0032 (12) | 0.0076 (12) |
| C1 | 0.0645 (18) | 0.0637 (18) | 0.0327 (16) | −0.0190 (15) | −0.0064 (13) | 0.0127 (13) |
| C10 | 0.0502 (15) | 0.0582 (16) | 0.0269 (14) | −0.0009 (13) | −0.0047 (11) | 0.0084 (11) |
| C15 | 0.0705 (19) | 0.074 (2) | 0.0262 (14) | 0.0165 (16) | −0.0010 (13) | −0.0003 (13) |
| C5 | 0.0581 (18) | 0.075 (2) | 0.0327 (16) | −0.0185 (16) | −0.0135 (13) | 0.0072 (14) |
| C11 | 0.0644 (18) | 0.079 (2) | 0.0332 (16) | 0.0206 (16) | −0.0042 (13) | 0.0068 (14) |
| N2 | 0.180 (4) | 0.084 (2) | 0.075 (3) | 0.040 (3) | 0.051 (3) | 0.013 (2) |
| C16 | 0.083 (3) | 0.096 (3) | 0.098 (4) | −0.009 (3) | 0.002 (2) | 0.004 (2) |
| C17 | 0.099 (3) | 0.109 (3) | 0.098 (4) | 0.019 (3) | −0.007 (3) | −0.019 (3) |
| O2 | 0.0893 (18) | 0.106 (2) | 0.0561 (16) | −0.0564 (16) | −0.0266 (13) | 0.0311 (14) |
| O4 | 0.0778 (16) | 0.115 (2) | 0.0328 (12) | −0.0436 (15) | −0.0197 (11) | 0.0107 (12) |
| O7 | 0.128 (3) | 0.165 (4) | 0.090 (3) | −0.030 (3) | 0.017 (2) | −0.026 (3) |
| N1—C14 | 1.393 (4) | C2—C1 | 1.501 (4) |
| N1—C9 | 1.408 (4) | C9—C10 | 1.486 (4) |
| N1—C7 | 1.461 (3) | C1—O2 | 1.237 (4) |
| C3—C2 | 1.389 (4) | C10—C11 | 1.373 (4) |
| C3—C4 | 1.394 (4) | C15—C11i | 1.403 (4) |
| C3—H3A | 0.9300 | C15—H15A | 0.9300 |
| O6—C9 | 1.208 (4) | C5—O4 | 1.291 (4) |
| C6—C7 | 1.374 (4) | C11—C15i | 1.403 (4) |
| C6—C4 | 1.393 (4) | C11—H11A | 0.9300 |
| C6—H6A | 0.9300 | N2—C16 | 1.448 (6) |
| C12—C13 | 1.403 (4) | N2—C17 | 1.463 (6) |
| C12—C10 | 1.421 (4) | N2—H2A | 0.9000 |
| C12—C12i | 1.421 (5) | N2—H2B | 0.9000 |
| C7—C8 | 1.393 (4) | C16—H16A | 0.9600 |
| C8—C2 | 1.395 (4) | C16—H16B | 0.9600 |
| C8—H8A | 0.9300 | C16—H16C | 0.9600 |
| O5—C14 | 1.222 (4) | C17—H17A | 0.9600 |
| O3—C5 | 1.224 (4) | C17—H17B | 0.9600 |
| C14—C13 | 1.486 (4) | C17—H17C | 0.9600 |
| C4—C5 | 1.499 (4) | O4—H2 | 1.15 (6) |
| C13—C15 | 1.387 (4) | O7—H3 | 0.98 (2) |
| O1—C1 | 1.276 (4) | O7—H4 | 0.98 (2) |
| O1—H1 | 1.216 (2) | ||
| C14—N1—C9 | 125.5 (2) | O2—C1—C2 | 120.8 (3) |
| C14—N1—C7 | 117.0 (2) | O1—C1—C2 | 114.8 (2) |
| C9—N1—C7 | 117.5 (2) | C11—C10—C12 | 119.9 (2) |
| C2—C3—C4 | 120.7 (2) | C11—C10—C9 | 120.5 (3) |
| C2—C3—H3A | 119.7 | C12—C10—C9 | 119.5 (3) |
| C4—C3—H3A | 119.7 | C13—C15—C11i | 119.4 (3) |
| C7—C6—C4 | 119.7 (3) | C13—C15—H15A | 120.3 |
| C7—C6—H6A | 120.2 | C11i—C15—H15A | 120.3 |
| C4—C6—H6A | 120.2 | O3—C5—O4 | 124.9 (3) |
| C13—C12—C10 | 121.5 (2) | O3—C5—C4 | 120.8 (3) |
| C13—C12—C12i | 119.8 (3) | O4—C5—C4 | 114.3 (3) |
| C10—C12—C12i | 118.8 (3) | C10—C11—C15i | 121.5 (3) |
| C6—C7—C8 | 121.5 (2) | C10—C11—H11A | 119.3 |
| C6—C7—N1 | 120.6 (2) | C15i—C11—H11A | 119.3 |
| C8—C7—N1 | 117.9 (2) | C16—N2—C17 | 117.5 (4) |
| C7—C8—C2 | 119.0 (2) | C16—N2—H2A | 107.9 |
| C7—C8—H8A | 120.5 | C17—N2—H2A | 107.9 |
| C2—C8—H8A | 120.5 | C16—N2—H2B | 107.9 |
| O5—C14—N1 | 120.6 (3) | C17—N2—H2B | 107.9 |
| O5—C14—C13 | 122.7 (3) | H2A—N2—H2B | 107.2 |
| N1—C14—C13 | 116.7 (2) | N2—C16—H16A | 109.5 |
| C6—C4—C3 | 119.4 (2) | N2—C16—H16B | 109.5 |
| C6—C4—C5 | 121.0 (3) | H16A—C16—H16B | 109.5 |
| C3—C4—C5 | 119.6 (2) | N2—C16—H16C | 109.5 |
| C15—C13—C12 | 120.6 (3) | H16A—C16—H16C | 109.5 |
| C15—C13—C14 | 119.3 (3) | H16B—C16—H16C | 109.5 |
| C12—C13—C14 | 120.0 (3) | N2—C17—H17A | 109.5 |
| C1—O1—H1 | 117.0 (2) | N2—C17—H17B | 109.5 |
| C3—C2—C8 | 119.7 (2) | H17A—C17—H17B | 109.5 |
| C3—C2—C1 | 119.2 (2) | N2—C17—H17C | 109.5 |
| C8—C2—C1 | 121.1 (2) | H17A—C17—H17C | 109.5 |
| O6—C9—N1 | 120.6 (3) | H17B—C17—H17C | 109.5 |
| O6—C9—C10 | 123.0 (3) | C5—O4—H2 | 114 (3) |
| N1—C9—C10 | 116.4 (2) | H3—O7—H4 | 102 (4) |
| O2—C1—O1 | 124.4 (3) |
| H··· | ||||
| O1—H1···O1ii | 1.22 (1) | 1.22 (1) | 2.432 (5) | 180 (1) |
| O4—H2···O4iii | 1.15 (6) | 1.45 (5) | 2.441 (5) | 139 (4) |
| N2—H2 | 0.90 | 2.22 | 2.850 (5) | 127 |
| O7—H3···O2ii | 0.98 (2) | 1.95 (5) | 2.805 (6) | 144 (6) |
| O7—H4···O3v | 0.98 (2) | 1.85 (4) | 2.771 (6) | 154 (7) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1—H1⋯O1i | 1.22 (1) | 1.22 (1) | 2.432 (5) | 180 (1) |
| O4—H2⋯O4ii | 1.15 (6) | 1.45 (5) | 2.441 (5) | 139 (4) |
| N2—H2 | 0.90 | 2.22 | 2.850 (5) | 127 |
| O7—H3⋯O2i | 0.98 (2) | 1.95 (5) | 2.805 (6) | 144 (6) |
| O7—H4⋯O3iv | 0.98 (2) | 1.85 (4) | 2.771 (6) | 154 (7) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .