Literature DB >> 22087660

Dissecting phosphorylation networks: lessons learned from yeast.

Janine Mok1, Xiaowei Zhu, Michael Snyder.   

Abstract

Protein phosphorylation continues to be regarded as one of the most important post-translational modifications found in eukaryotes and has been implicated in key roles in the development of a number of human diseases. In order to elucidate roles for the 518 human kinases, phosphorylation has routinely been studied using the budding yeast Saccharomyces cerevisiae as a model system. In recent years, a number of technologies have emerged to globally map phosphorylation in yeast. In this article, we review these technologies and discuss how these phosphorylation mapping efforts have shed light on our understanding of kinase signaling pathways and eukaryotic proteomic networks in general.
© 2011 Expert Reviews Ltd

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Year:  2011        PMID: 22087660      PMCID: PMC3262144          DOI: 10.1586/epr.11.64

Source DB:  PubMed          Journal:  Expert Rev Proteomics        ISSN: 1478-9450            Impact factor:   3.940


  62 in total

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Journal:  Science       Date:  1999-10-15       Impact factor: 47.728

2.  Network motifs: simple building blocks of complex networks.

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Journal:  Science       Date:  2002-10-25       Impact factor: 47.728

Review 3.  Network biology: understanding the cell's functional organization.

Authors:  Albert-László Barabási; Zoltán N Oltvai
Journal:  Nat Rev Genet       Date:  2004-02       Impact factor: 53.242

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Journal:  Nat Rev Drug Discov       Date:  2002-04       Impact factor: 84.694

5.  Multiscale control of flooding and riparian-forest composition in Lower Michigan, USA.

Authors:  Matthew E Baker; Michael J Wiley
Journal:  Ecology       Date:  2009-01       Impact factor: 5.499

6.  Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway.

Authors:  Albrecht Gruhler; Jesper V Olsen; Shabaz Mohammed; Peter Mortensen; Nils J Faergeman; Matthias Mann; Ole N Jensen
Journal:  Mol Cell Proteomics       Date:  2005-01-22       Impact factor: 5.911

7.  Deciphering protein kinase specificity through large-scale analysis of yeast phosphorylation site motifs.

Authors:  Janine Mok; Philip M Kim; Hugo Y K Lam; Stacy Piccirillo; Xiuqiong Zhou; Grace R Jeschke; Douglas L Sheridan; Sirlester A Parker; Ved Desai; Miri Jwa; Elisabetta Cameroni; Hengyao Niu; Matthew Good; Attila Remenyi; Jia-Lin Nianhan Ma; Yi-Jun Sheu; Holly E Sassi; Richelle Sopko; Clarence S M Chan; Claudio De Virgilio; Nancy M Hollingsworth; Wendell A Lim; David F Stern; Bruce Stillman; Brenda J Andrews; Mark B Gerstein; Michael Snyder; Benjamin E Turk
Journal:  Sci Signal       Date:  2010-02-16       Impact factor: 8.192

8.  A CDK-catalysed regulatory phosphorylation for formation of the DNA replication complex Sld2-Dpb11.

Authors:  Yon-Soo Tak; Yoshimi Tanaka; Shizuko Endo; Yoichiro Kamimura; Hiroyuki Araki
Journal:  EMBO J       Date:  2006-04-13       Impact factor: 11.598

9.  Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry.

Authors:  An Chi; Curtis Huttenhower; Lewis Y Geer; Joshua J Coon; John E P Syka; Dina L Bai; Jeffrey Shabanowitz; Daniel J Burke; Olga G Troyanskaya; Donald F Hunt
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-07       Impact factor: 11.205

10.  Functional organization of the S. cerevisiae phosphorylation network.

Authors:  Dorothea Fiedler; Hannes Braberg; Monika Mehta; Gal Chechik; Gerard Cagney; Paromita Mukherjee; Andrea C Silva; Michael Shales; Sean R Collins; Sake van Wageningen; Patrick Kemmeren; Frank C P Holstege; Jonathan S Weissman; Michael-Christopher Keogh; Daphne Koller; Kevan M Shokat; Nevan J Krogan
Journal:  Cell       Date:  2009-03-06       Impact factor: 41.582

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  9 in total

1.  Quantifying Kinase-Specific Phosphorylation Stoichiometry Using Stable Isotope Labeling In a Reverse In-Gel Kinase Assay.

Authors:  Xiang Li; Jonathan T Cox; Weiliang Huang; Maureen Kane; Keqi Tang; Charles J Bieberich
Journal:  Anal Chem       Date:  2016-11-18       Impact factor: 6.986

Review 2.  Budding yeast for budding geneticists: a primer on the Saccharomyces cerevisiae model system.

Authors:  Andrea A Duina; Mary E Miller; Jill B Keeney
Journal:  Genetics       Date:  2014-05       Impact factor: 4.562

3.  Evolutionary and Biochemical Aspects of Chemical Stress Resistance in Saccharomyces cerevisiae.

Authors:  Thiago Motta Venancio; Daniel Bellieny-Rabelo; L Aravind
Journal:  Front Genet       Date:  2012-03-30       Impact factor: 4.599

4.  An approach for determining and measuring network hierarchy applied to comparing the phosphorylome and the regulome.

Authors:  Chao Cheng; Erik Andrews; Koon-Kiu Yan; Matthew Ung; Daifeng Wang; Mark Gerstein
Journal:  Genome Biol       Date:  2015-03-31       Impact factor: 13.583

5.  Proteomic analysis reveals a novel function of the kinase Sat4p in Saccharomyces cerevisiae mitochondria.

Authors:  Uta Gey; Cornelia Czupalla; Bernard Hoflack; Udo Krause; Gerhard Rödel
Journal:  PLoS One       Date:  2014-08-12       Impact factor: 3.240

6.  A comprehensive protein-protein interactome for yeast PAS kinase 1 reveals direct inhibition of respiration through the phosphorylation of Cbf1.

Authors:  Desiree DeMille; Benjamin T Bikman; Andrew D Mathis; John T Prince; Jordan T Mackay; Steven W Sowa; Tacie D Hall; Julianne H Grose
Journal:  Mol Biol Cell       Date:  2014-05-21       Impact factor: 4.138

7.  Mitogen-Activated Protein Kinase Cross-Talk Interaction Modulates the Production of Melanins in Aspergillus fumigatus.

Authors:  Adriana Oliveira Manfiolli; Filipe Silva Siqueira; Thaila Fernanda Dos Reis; Patrick Van Dijck; Sanne Schrevens; Sandra Hoefgen; Martin Föge; Maria Straßburger; Leandro José de Assis; Thorsten Heinekamp; Marina Campos Rocha; Slavica Janevska; Axel A Brakhage; Iran Malavazi; Gustavo H Goldman; Vito Valiante
Journal:  mBio       Date:  2019-03-26       Impact factor: 7.867

8.  Computational Phosphorylation Network Reconstruction: An Update on Methods and Resources.

Authors:  Min Zhang; Guangyou Duan
Journal:  Methods Mol Biol       Date:  2021

Review 9.  Toward a systems-level view of dynamic phosphorylation networks.

Authors:  Robert H Newman; Jin Zhang; Heng Zhu
Journal:  Front Genet       Date:  2014-08-15       Impact factor: 4.599

  9 in total

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