Literature DB >> 22086149

Coupled electron and proton transfer reactions during the O→E transition in bovine cytochrome c oxidase.

Dragan M Popović1, Alexei A Stuchebrukhov.   

Abstract

A combined DFT/electrostatic approach is employed to study the coupling of proton and electron transfer reactions in cytochrome c oxidase (CcO) and its proton pumping mechanism. The coupling of the chemical proton to the internal electron transfer within the binuclear center is examined for the O→E transition. The novel features of the His291 pumping model are proposed, which involve timely well-synchronized sequence of the proton-coupled electron transfer reactions. The obtained pK(a)s and E(m)s of the key ionizable and redox-active groups at the different stages of the O→E transition are consistent with available experimental data. The PT step from E242 to H291 is examined in detail for various redox states of the hemes and various conformations of E242 side-chain. Redox potential calculations of the successive steps in the reaction cycle during the O→E transition are able to explain a cascade of equilibria between the different intermediate states and electron redistribution between the metal centers during the course of the catalytic activity. All four electrometric phases are discussed in the light of the obtained results, providing a robust support for the His291 model of proton pumping in CcO. Copyright Â
© 2011 Elsevier B.V. All rights reserved.

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Year:  2011        PMID: 22086149      PMCID: PMC4220735          DOI: 10.1016/j.bbabio.2011.10.013

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  92 in total

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Authors:  Jian Li; Cindy L. Fisher; Robert Konecny; Donald Bashford; Louis Noodleman
Journal:  Inorg Chem       Date:  1999-03-08       Impact factor: 5.165

2.  The catalytic cycle of cytochrome c oxidase is not the sum of its two halves.

Authors:  Dmitry Bloch; Ilya Belevich; Audrius Jasaitis; Camilla Ribacka; Anne Puustinen; Michael I Verkhovsky; Mårten Wikström
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-29       Impact factor: 11.205

3.  The X-ray crystal structures of wild-type and EQ(I-286) mutant cytochrome c oxidases from Rhodobacter sphaeroides.

Authors:  Margareta Svensson-Ek; Jeff Abramson; Gisela Larsson; Susanna Törnroth; Peter Brzezinski; So Iwata
Journal:  J Mol Biol       Date:  2002-08-09       Impact factor: 5.469

4.  The coupling of electron transfer and proton translocation: electrostatic calculations on Paracoccus denitrificans cytochrome c oxidase.

Authors:  A Kannt; C R Lancaster; H Michel
Journal:  Biophys J       Date:  1998-02       Impact factor: 4.033

5.  Proton exit channels in bovine cytochrome c oxidase.

Authors:  Dragan M Popović; Alexei A Stuchebrukhov
Journal:  J Phys Chem B       Date:  2005-02-10       Impact factor: 2.991

6.  DFT/electrostatic calculations of pK(a) values in cytochrome c oxidase.

Authors:  Dragan M Popović; Jason Quenneville; Alexei A Stuchebrukhov
Journal:  J Phys Chem B       Date:  2005-03-03       Impact factor: 2.991

7.  Controlled uncoupling and recoupling of proton pumping in cytochrome c oxidase.

Authors:  Gisela Brändén; Ashtamurthy S Pawate; Robert B Gennis; Peter Brzezinski
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-03       Impact factor: 11.205

8.  Mechanism and energetics by which glutamic acid 242 prevents leaks in cytochrome c oxidase.

Authors:  Ville R I Kaila; Michael I Verkhovsky; Gerhard Hummer; Mårten Wikström
Journal:  Biochim Biophys Acta       Date:  2009-05-03

Review 9.  Cytochrome c oxidase.

Authors:  C Ostermeier; S Iwata; H Michel
Journal:  Curr Opin Struct Biol       Date:  1996-08       Impact factor: 6.809

10.  Microscopic pKa analysis of Glu286 in cytochrome c oxidase (Rhodobacter sphaeroides): toward a calibrated molecular model.

Authors:  Nilanjan Ghosh; Xavier Prat-Resina; M R Gunner; Qiang Cui
Journal:  Biochemistry       Date:  2009-03-24       Impact factor: 3.162

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  5 in total

1.  Proton-coupled electron transfer and the role of water molecules in proton pumping by cytochrome c oxidase.

Authors:  Vivek Sharma; Giray Enkavi; Ilpo Vattulainen; Tomasz Róg; Mårten Wikström
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-02       Impact factor: 11.205

2.  Redox-Driven Proton Pumps of the Respiratory Chain.

Authors:  Alexei A Stuchebrukhov
Journal:  Biophys J       Date:  2018-08-02       Impact factor: 4.033

Review 3.  Molecular mechanisms for generating transmembrane proton gradients.

Authors:  M R Gunner; Muhamed Amin; Xuyu Zhu; Jianxun Lu
Journal:  Biochim Biophys Acta       Date:  2013-03-16

4.  Structural Changes and Proton Transfer in Cytochrome c Oxidase.

Authors:  Jóhanna Vilhjálmsdóttir; Ann-Louise Johansson; Peter Brzezinski
Journal:  Sci Rep       Date:  2015-08-27       Impact factor: 4.379

5.  Single Enzyme Experiments Reveal a Long-Lifetime Proton Leak State in a Heme-Copper Oxidase.

Authors:  Mengqiu Li; Sune K Jørgensen; Duncan G G McMillan; Łukasz Krzemiński; Nikolaos N Daskalakis; Riitta H Partanen; Marijonas Tutkus; Roman Tuma; Dimitrios Stamou; Nikos S Hatzakis; Lars J C Jeuken
Journal:  J Am Chem Soc       Date:  2015-12-17       Impact factor: 15.419

  5 in total

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