Literature DB >> 16407159

Controlled uncoupling and recoupling of proton pumping in cytochrome c oxidase.

Gisela Brändén1, Ashtamurthy S Pawate, Robert B Gennis, Peter Brzezinski.   

Abstract

Cytochrome c oxidase (CcO) is the terminal enzyme of the respiratory chain and couples energetically the reduction of oxygen to water to proton pumping across the membrane. The results from previous studies showed that proton pumping can be uncoupled from the O2-reduction reaction by replacement of one single residue, Asn-139 by Asp (N139D), located approximately 30 A from the catalytic site, in the D-proton pathway. The uncoupling was correlated with an increase in the pK(a) of an internal proton donor, Glu-286, from approximately 9.4 to >11. Here, we show that replacement of the acidic residue, Asp-132 by Asn in the N139D CcO (D132N/N139D double-mutant CcO) results in restoration of the Glu-286 pK(a) to the original value and recoupling of the proton pump during steady-state turnover. Furthermore, a kinetic investigation of the specific reaction steps in the D132N/N139D double-mutant CcO showed that proton pumping is sustained even if proton uptake from solution, through the D-pathway, is slowed. However, during single-turnover oxidation of the fully reduced CcO the P --> F transition, which does not involve electron transfer to the catalytic site, was not coupled to proton pumping. The results provide insights into the mechanism of proton pumping by CcO and the structural elements involved in this process.

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Year:  2006        PMID: 16407159      PMCID: PMC1326165          DOI: 10.1073/pnas.0507734103

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  49 in total

1.  The roles of the two proton input channels in cytochrome c oxidase from Rhodobacter sphaeroides probed by the effects of site-directed mutations on time-resolved electrogenic intraprotein proton transfer.

Authors:  A A Konstantinov; S Siletsky; D Mitchell; A Kaulen; R B Gennis
Journal:  Proc Natl Acad Sci U S A       Date:  1997-08-19       Impact factor: 11.205

2.  Involvement of glutamic acid 278 in the redox reaction of the cytochrome c oxidase from Paracoccus denitrificans investigated by FTIR spectroscopy.

Authors:  P Hellwig; J Behr; C Ostermeier; O M Richter; U Pfitzner; A Odenwald; B Ludwig; H Michel; W Mäntele
Journal:  Biochemistry       Date:  1998-05-19       Impact factor: 3.162

3.  VMD: visual molecular dynamics.

Authors:  W Humphrey; A Dalke; K Schulten
Journal:  J Mol Graph       Date:  1996-02

4.  Role of the pathway through K(I-362) in proton transfer in cytochrome c oxidase from R. sphaeroides.

Authors:  P Adelroth; R B Gennis; P Brzezinski
Journal:  Biochemistry       Date:  1998-02-24       Impact factor: 3.162

5.  Glutamate 286 in cytochrome aa3 from Rhodobacter sphaeroides is involved in proton uptake during the reaction of the fully-reduced enzyme with dioxygen.

Authors:  P Adelroth; M S Ek; D M Mitchell; R B Gennis; P Brzezinski
Journal:  Biochemistry       Date:  1997-11-11       Impact factor: 3.162

6.  Structure at 2.8 A resolution of cytochrome c oxidase from Paracoccus denitrificans.

Authors:  S Iwata; C Ostermeier; B Ludwig; H Michel
Journal:  Nature       Date:  1995-08-24       Impact factor: 49.962

7.  Possible proton relay pathways in cytochrome c oxidase.

Authors:  J R Fetter; J Qian; J Shapleigh; J W Thomas; A García-Horsman; E Schmidt; J Hosler; G T Babcock; R B Gennis; S Ferguson-Miller
Journal:  Proc Natl Acad Sci U S A       Date:  1995-02-28       Impact factor: 11.205

8.  Factors determining electron-transfer rates in cytochrome c oxidase: investigation of the oxygen reaction in the R. sphaeroides enzyme.

Authors:  P Adelroth; M Ek; P Brzezinski
Journal:  Biochim Biophys Acta       Date:  1998-10-05

9.  Flash-induced membrane potential generation by cytochrome c oxidase.

Authors:  D Zaslavsky; A D Kaulen; I A Smirnova; T Vygodina; A A Konstantinov
Journal:  FEBS Lett       Date:  1993-12-28       Impact factor: 4.124

10.  Proton uptake controls electron transfer in cytochrome c oxidase.

Authors:  M Karpefors; P Adelroth; Y Zhen; S Ferguson-Miller; P Brzezinski
Journal:  Proc Natl Acad Sci U S A       Date:  1998-11-10       Impact factor: 11.205

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  29 in total

1.  Replacing Asn207 by aspartate at the neck of the D channel in the aa3-type cytochrome c oxidase from Rhodobacter sphaeroides results in decoupling the proton pump.

Authors:  Dan Han; Andreas Namslauer; Ashtamurthy Pawate; Joel E Morgan; Stanislav Nagy; Ahmet S Vakkasoglu; Peter Brzezinski; Robert B Gennis
Journal:  Biochemistry       Date:  2006-11-28       Impact factor: 3.162

2.  pKa of Glu325 in LacY.

Authors:  Natalia Grytsyk; Junichi Sugihara; H Ronald Kaback; Petra Hellwig
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-01       Impact factor: 11.205

3.  Decoupling mutations in the D-channel of the aa(3)-type cytochrome c oxidase from Rhodobacter sphaeroides suggest that a continuous hydrogen-bonded chain of waters is essential for proton pumping.

Authors:  Jiapeng Zhu; Huazhi Han; Ashtamurthy Pawate; Robert B Gennis
Journal:  Biochemistry       Date:  2010-06-01       Impact factor: 3.162

4.  Analyzing the electrogenicity of cytochrome c oxidase.

Authors:  Ilsoo Kim; Arieh Warshel
Journal:  Proc Natl Acad Sci U S A       Date:  2016-06-28       Impact factor: 11.205

5.  Alternative initial proton acceptors for the D pathway of Rhodobacter sphaeroides cytochrome c oxidase.

Authors:  Lakshman Varanasi; Jonathan Hosler
Journal:  Biochemistry       Date:  2011-03-21       Impact factor: 3.162

6.  Hydrogen-Bonded Network and Water Dynamics in the D-channel of Cytochrome c Oxidase.

Authors:  Tahereh Ghane; Rene F Gorriz; Sandro Wrzalek; Senta Volkenandt; Ferand Dalatieh; Marco Reidelbach; Petra Imhof
Journal:  J Membr Biol       Date:  2018-02-12       Impact factor: 1.843

7.  Impaired proton pumping in cytochrome c oxidase upon structural alteration of the D pathway.

Authors:  Håkan Lepp; Lina Salomonsson; Jia-Peng Zhu; Robert B Gennis; Peter Brzezinski
Journal:  Biochim Biophys Acta       Date:  2008-04-16

8.  Role of aspartate 132 at the orifice of a proton pathway in cytochrome c oxidase.

Authors:  Ann-Louise Johansson; Martin Högbom; Jens Carlsson; Robert B Gennis; Peter Brzezinski
Journal:  Proc Natl Acad Sci U S A       Date:  2013-05-14       Impact factor: 11.205

9.  Properties of Arg481 mutants of the aa3-type cytochrome c oxidase from Rhodobacter sphaeroides suggest that neither R481 nor the nearby D-propionate of heme a3 is likely to be the proton loading site of the proton pump.

Authors:  Hyun Ju Lee; Linda Ojemyr; Ahmet Vakkasoglu; Peter Brzezinski; Robert B Gennis
Journal:  Biochemistry       Date:  2009-08-04       Impact factor: 3.162

10.  Molecular dynamics simulation of water in cytochrome c oxidase reveals two water exit pathways and the mechanism of transport.

Authors:  Ryogo Sugitani; Alexei A Stuchebrukhov
Journal:  Biochim Biophys Acta       Date:  2009-04-21
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