Literature DB >> 22085337

Escherichia coli SlyD, more than a Ni(II) reservoir.

Harini Kaluarachchi1, Jei Wei Zhang, Deborah B Zamble.   

Abstract

SlyD interacts with HypB and contributes to nickel insertion during [NiFe]-hydrogenase biogenesis. Herein, we provide evidence of SlyD acting as a nickel storage determinant in Escherichia coli and show that this Ni(II) can be mobilized to HypB in vitro even under competitive conditions. Furthermore, SlyD enhances the GTPase activity of HypB, and acceleration of release of Ni(II) from HypB is more pronounced when HypB is GDP-bound. The data support a model in which a HypB-SlyD complex establishes communication between GTP hydrolysis and nickel delivery and provide insight into the role of the HypB-SlyD complex during [NiFe]-hydrogenase biosynthesis.

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Year:  2011        PMID: 22085337      PMCID: PMC3253374          DOI: 10.1021/bi201590d

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  19 in total

1.  A role for SlyD in the Escherichia coli hydrogenase biosynthetic pathway.

Authors:  Jie Wei Zhang; Gareth Butland; Jack F Greenblatt; Andrew Emili; Deborah B Zamble
Journal:  J Biol Chem       Date:  2004-11-29       Impact factor: 5.157

2.  Characterization of UreG, identification of a UreD-UreF-UreG complex, and evidence suggesting that a nucleotide-binding site in UreG is required for in vivo metallocenter assembly of Klebsiella aerogenes urease.

Authors:  M B Moncrief; R P Hausinger
Journal:  J Bacteriol       Date:  1997-07       Impact factor: 3.490

3.  Protein interactions and localization of the Escherichia coli accessory protein HypA during nickel insertion to [NiFe] hydrogenase.

Authors:  Kim C Chan Chung; Deborah B Zamble
Journal:  J Biol Chem       Date:  2011-10-20       Impact factor: 5.157

4.  The Escherichia coli SlyD is a metal ion-regulated peptidyl-prolyl cis/trans-isomerase.

Authors:  S Hottenrott; T Schumann; A Plückthun; G Fischer; J U Rahfeld
Journal:  J Biol Chem       Date:  1997-06-20       Impact factor: 5.157

5.  Metal binding activity of the Escherichia coli hydrogenase maturation factor HypB.

Authors:  Michael R Leach; Shaifali Sandal; Haowei Sun; Deborah B Zamble
Journal:  Biochemistry       Date:  2005-09-13       Impact factor: 3.162

6.  The HypB protein from Bradyrhizobium japonicum can store nickel and is required for the nickel-dependent transcriptional regulation of hydrogenase.

Authors:  J W Olson; C Fu; R J Maier
Journal:  Mol Microbiol       Date:  1997-04       Impact factor: 3.501

7.  SlyD proteins from different species exhibit high prolyl isomerase and chaperone activities.

Authors:  Christian Scholz; Barbara Eckert; Franz Hagn; Peter Schaarschmidt; Jochen Balbach; Franz Xaver Schmid
Journal:  Biochemistry       Date:  2006-01-10       Impact factor: 3.162

8.  Relationship between the GTPase, metal-binding, and dimerization activities of E. coli HypB.

Authors:  Fang Cai; Thanh T Ngu; Harini Kaluarachchi; Deborah B Zamble
Journal:  J Biol Inorg Chem       Date:  2011-05-05       Impact factor: 3.358

9.  GTP hydrolysis by HypB is essential for nickel insertion into hydrogenases of Escherichia coli.

Authors:  T Maier; F Lottspeich; A Böck
Journal:  Eur J Biochem       Date:  1995-05-15

10.  Roles of conserved nucleotide-binding domains in accessory proteins, HypB and UreG, in the maturation of nickel-enzymes required for efficient Helicobacter pylori colonization.

Authors:  Nalini Mehta; Stéphane Benoit; Robert J Maier
Journal:  Microb Pathog       Date:  2003-11       Impact factor: 3.738

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  11 in total

1.  Klebsiella aerogenes UreF: identification of the UreG binding site and role in enhancing the fidelity of urease activation.

Authors:  Jodi L Boer; Robert P Hausinger
Journal:  Biochemistry       Date:  2012-03-06       Impact factor: 3.162

Review 2.  Structure, function, and biosynthesis of nickel-dependent enzymes.

Authors:  Marila Alfano; Christine Cavazza
Journal:  Protein Sci       Date:  2020-02-18       Impact factor: 6.725

3.  Relationship between Ni(II) and Zn(II) coordination and nucleotide binding by the Helicobacter pylori [NiFe]-hydrogenase and urease maturation factor HypB.

Authors:  Andrew M Sydor; Hugo Lebrette; Rishikesh Ariyakumaran; Christine Cavazza; Deborah B Zamble
Journal:  J Biol Chem       Date:  2013-12-12       Impact factor: 5.157

Review 4.  Metallochaperones and metalloregulation in bacteria.

Authors:  Daiana A Capdevila; Katherine A Edmonds; David P Giedroc
Journal:  Essays Biochem       Date:  2017-05-09       Impact factor: 8.000

Review 5.  Specific metal recognition in nickel trafficking.

Authors:  Khadine A Higgins; Carolyn E Carr; Michael J Maroney
Journal:  Biochemistry       Date:  2012-09-28       Impact factor: 3.162

6.  A universal scaffold for synthesis of the Fe(CN)2(CO) moiety of [NiFe] hydrogenase.

Authors:  Ingmar Bürstel; Elisabeth Siebert; Gordon Winter; Philipp Hummel; Ingo Zebger; Bärbel Friedrich; Oliver Lenz
Journal:  J Biol Chem       Date:  2012-09-27       Impact factor: 5.157

7.  High-affinity metal binding by the Escherichia coli [NiFe]-hydrogenase accessory protein HypB is selectively modulated by SlyD.

Authors:  Mozhgan Khorasani-Motlagh; Michael J Lacasse; Deborah B Zamble
Journal:  Metallomics       Date:  2017-05-24       Impact factor: 4.526

8.  Metallo-GTPase HypB from Helicobacter pylori and its interaction with nickel chaperone protein HypA.

Authors:  Wei Xia; Hongyan Li; Xinming Yang; Kam-Bo Wong; Hongzhe Sun
Journal:  J Biol Chem       Date:  2011-12-18       Impact factor: 5.157

9.  Metal transfer within the Escherichia coli HypB-HypA complex of hydrogenase accessory proteins.

Authors:  Colin D Douglas; Thanh T Ngu; Harini Kaluarachchi; Deborah B Zamble
Journal:  Biochemistry       Date:  2013-08-22       Impact factor: 3.162

10.  Co(II) and Ni(II) binding of the Escherichia coli transcriptional repressor RcnR orders its N terminus, alters helix dynamics, and reduces DNA affinity.

Authors:  Hsin-Ting Huang; Cedric E Bobst; Jeffrey S Iwig; Peter T Chivers; Igor A Kaltashov; Michael J Maroney
Journal:  J Biol Chem       Date:  2017-11-17       Impact factor: 5.157

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