Literature DB >> 21544686

Relationship between the GTPase, metal-binding, and dimerization activities of E. coli HypB.

Fang Cai1, Thanh T Ngu, Harini Kaluarachchi, Deborah B Zamble.   

Abstract

Biosynthesis of the metallocenter in the active site of the [NiFe] hydrogenase enzyme requires the accessory protein HypB, which is a metal-binding GTPase. In this study, the interplay between the individual activities of Escherichia coli HypB was examined. The full-length protein undergoes nucleotide-responsive dimerization that is disrupted upon mutation of L242 and L246 to alanine. This mutant HypB is monomeric under all of the conditions investigated but the inability of L242A/L246A HypB to dimerize does not abolish its GTPase activity and the monomeric protein has metal-binding behavior similar to that of wild-type HypB. Furthermore, expression of L242A/L246A HypB in vivo results in hydrogenase activity that is approximately half of the activity produced by the wild-type control, suggesting that dimerization of HypB does not have a critical role in the hydrogenase maturation pathway. In contrast, the GTPase activity of HypB is modulated by metal loading of the protein. These results provide insight into the role of HypB in hydrogenase biosynthesis.

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Year:  2011        PMID: 21544686     DOI: 10.1007/s00775-011-0782-y

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  43 in total

Review 1.  Classification and phylogeny of hydrogenases.

Authors:  P M Vignais; B Billoud; J Meyer
Journal:  FEMS Microbiol Rev       Date:  2001-08       Impact factor: 16.408

2.  Classification and evolution of P-loop GTPases and related ATPases.

Authors:  Detlef D Leipe; Yuri I Wolf; Eugene V Koonin; L Aravind
Journal:  J Mol Biol       Date:  2002-03-15       Impact factor: 5.469

Review 3.  Metallochaperones: bind and deliver.

Authors:  Amy C Rosenzweig
Journal:  Chem Biol       Date:  2002-06

4.  Mutational analysis of the operon (hyc) determining hydrogenase 3 formation in Escherichia coli.

Authors:  M Sauter; R Böhm; A Böck
Journal:  Mol Microbiol       Date:  1992-06       Impact factor: 3.501

5.  Structural insights into HypB, a GTP-binding protein that regulates metal binding.

Authors:  Raphael Gasper; Andrea Scrima; Alfred Wittinghofer
Journal:  J Biol Chem       Date:  2006-06-28       Impact factor: 5.157

6.  Nickel-containing hydrogenase isoenzymes from anaerobically grown Escherichia coli K-12.

Authors:  S P Ballantine; D H Boxer
Journal:  J Bacteriol       Date:  1985-08       Impact factor: 3.490

7.  HypB protein of Bradyrhizobium japonicum is a metal-binding GTPase capable of binding 18 divalent nickel ions per dimer.

Authors:  C Fu; J W Olson; R J Maier
Journal:  Proc Natl Acad Sci U S A       Date:  1995-03-14       Impact factor: 11.205

8.  Structural and biological analysis of the metal sites of Escherichia coli hydrogenase accessory protein HypB.

Authors:  Alistair V Dias; Cory M Mulvihill; Michael R Leach; Ingrid J Pickering; Graham N George; Deborah B Zamble
Journal:  Biochemistry       Date:  2008-10-23       Impact factor: 3.162

Review 9.  Nickel uptake and utilization by microorganisms.

Authors:  Scott B Mulrooney; Robert P Hausinger
Journal:  FEMS Microbiol Rev       Date:  2003-06       Impact factor: 16.408

10.  UreG, a chaperone in the urease assembly process, is an intrinsically unstructured GTPase that specifically binds Zn2+.

Authors:  Barbara Zambelli; Massimiliano Stola; Francesco Musiani; Kris De Vriendt; Bart Samyn; Bart Devreese; Jozef Van Beeumen; Paola Turano; Alexander Dikiy; Donald A Bryant; Stefano Ciurli
Journal:  J Biol Chem       Date:  2004-11-12       Impact factor: 5.157

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  12 in total

1.  Escherichia coli SlyD, more than a Ni(II) reservoir.

Authors:  Harini Kaluarachchi; Jei Wei Zhang; Deborah B Zamble
Journal:  Biochemistry       Date:  2011-11-18       Impact factor: 3.162

2.  Protein interactions and localization of the Escherichia coli accessory protein HypA during nickel insertion to [NiFe] hydrogenase.

Authors:  Kim C Chan Chung; Deborah B Zamble
Journal:  J Biol Chem       Date:  2011-10-20       Impact factor: 5.157

3.  High-affinity metal binding by the Escherichia coli [NiFe]-hydrogenase accessory protein HypB is selectively modulated by SlyD.

Authors:  Mozhgan Khorasani-Motlagh; Michael J Lacasse; Deborah B Zamble
Journal:  Metallomics       Date:  2017-05-24       Impact factor: 4.526

4.  Bimodal Nickel-Binding Site on Escherichia coli [NiFe]-Hydrogenase Metallochaperone HypA.

Authors:  Michael J Lacasse; Kelly L Summers; Mozhgan Khorasani-Motlagh; Graham N George; Deborah B Zamble
Journal:  Inorg Chem       Date:  2019-07-05       Impact factor: 5.165

5.  YeiR: a metal-binding GTPase from Escherichia coli involved in metal homeostasis.

Authors:  Crysten E Blaby-Haas; Jessica A Flood; Valérie de Crécy-Lagard; Deborah B Zamble
Journal:  Metallomics       Date:  2012-04-17       Impact factor: 4.526

6.  Mechanistic Insights into the Metal-Dependent Activation of ZnII-Dependent Metallochaperones.

Authors:  Matthew R Jordan; Jiefei Wang; Andy Weiss; Eric P Skaar; Daiana A Capdevila; David P Giedroc
Journal:  Inorg Chem       Date:  2019-06-17       Impact factor: 5.165

7.  Metal transfer within the Escherichia coli HypB-HypA complex of hydrogenase accessory proteins.

Authors:  Colin D Douglas; Thanh T Ngu; Harini Kaluarachchi; Deborah B Zamble
Journal:  Biochemistry       Date:  2013-08-22       Impact factor: 3.162

8.  Metal binding properties of Escherichia coli YjiA, a member of the metal homeostasis-associated COG0523 family of GTPases.

Authors:  Andrew M Sydor; Marco Jost; Katherine S Ryan; Kaitlyn E Turo; Colin D Douglas; Catherine L Drennan; Deborah B Zamble
Journal:  Biochemistry       Date:  2013-03-12       Impact factor: 3.162

9.  Interaction between hydrogenase maturation factors HypA and HypB is required for [NiFe]-hydrogenase maturation.

Authors:  Kwok-Ho Chan; Ka-Man Lee; Kam-Bo Wong
Journal:  PLoS One       Date:  2012-02-27       Impact factor: 3.240

10.  Structural basis for GTP-dependent dimerization of hydrogenase maturation factor HypB.

Authors:  Kwok-Ho Chan; Ting Li; Ching-On Wong; Kam-Bo Wong
Journal:  PLoS One       Date:  2012-01-20       Impact factor: 3.240

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