Literature DB >> 22072649

Draft genome sequence of the biocontrol bacterium Pseudomonas putida B001, an oligotrophic bacterium that induces systemic resistance to plant diseases.

Ju Yeon Park1, Song Hee Han, Jang Hoon Lee, Yeon Soo Han, Yong Seok Lee, Xiaoqing Rong, Brian B McSpadden Gardener, Hong-Seog Park, Young Cheol Kim.   

Abstract

Pseudomonas putida B001 is a rhizobacterium that was isolated on the basis of its abilities to grow under low-nutrient conditions and induce systemic resistance against bacterial, fungal, and viral diseases of plants. Here we report the draft genome sequence and automatic annotation of strain B001. Comparison of this sequence to the sequenced genome of P. putida KT2440 points to a subset of gene functions that may be related to the defense-inducing functions of B001.

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Year:  2011        PMID： 22072649      PMCID： PMC3232894          DOI： 10.1128/JB.06217-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  7 in total

1.  Whole-genome random sequencing and assembly of Haemophilus influenzae Rd.

Authors:  R D Fleischmann; M D Adams; O White; R A Clayton; E F Kirkness; A R Kerlavage; C J Bult; J F Tomb; B A Dougherty; J M Merrick
Journal:  Science       Date:  1995-07-28       Impact factor: 47.728

2.  Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440.

Authors:  K E Nelson; C Weinel; I T Paulsen; R J Dodson; H Hilbert; V A P Martins dos Santos; D E Fouts; S R Gill; M Pop; M Holmes; L Brinkac; M Beanan; R T DeBoy; S Daugherty; J Kolonay; R Madupu; W Nelson; O White; J Peterson; H Khouri; I Hance; P Chris Lee; E Holtzapple; D Scanlan; K Tran; A Moazzez; T Utterback; M Rizzo; K Lee; D Kosack; D Moestl; H Wedler; J Lauber; D Stjepandic; J Hoheisel; M Straetz; S Heim; C Kiewitz; J A Eisen; K N Timmis; A Düsterhöft; B Tümmler; C M Fraser
Journal:  Environ Microbiol       Date:  2002-12       Impact factor: 5.491

3.  Diversity and Ecology of Biocontrol Pseudomonas spp. in Agricultural Systems.

Authors:  Brian B McSpadden Gardener
Journal:  Phytopathology       Date:  2007-02       Impact factor: 4.025

4.  Genome survey and characterization of endophytic bacteria exhibiting a beneficial effect on growth and development of poplar trees.

Authors:  Safiyh Taghavi; Craig Garafola; Sébastien Monchy; Lee Newman; Adam Hoffman; Nele Weyens; Tanja Barac; Jaco Vangronsveld; Daniel van der Lelie
Journal:  Appl Environ Microbiol       Date:  2008-12-05       Impact factor: 4.792

5.  Identification of a two-component regulatory pathway essential for Mn(II) oxidation in Pseudomonas putida GB-1.

Authors:  Kati Geszvain; Bradley M Tebo
Journal:  Appl Environ Microbiol       Date:  2009-12-28       Impact factor: 4.792

6.  The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes.

Authors:  Ross Overbeek; Tadhg Begley; Ralph M Butler; Jomuna V Choudhuri; Han-Yu Chuang; Matthew Cohoon; Valérie de Crécy-Lagard; Naryttza Diaz; Terry Disz; Robert Edwards; Michael Fonstein; Ed D Frank; Svetlana Gerdes; Elizabeth M Glass; Alexander Goesmann; Andrew Hanson; Dirk Iwata-Reuyl; Roy Jensen; Neema Jamshidi; Lutz Krause; Michael Kubal; Niels Larsen; Burkhard Linke; Alice C McHardy; Folker Meyer; Heiko Neuweger; Gary Olsen; Robert Olson; Andrei Osterman; Vasiliy Portnoy; Gordon D Pusch; Dmitry A Rodionov; Christian Rückert; Jason Steiner; Rick Stevens; Ines Thiele; Olga Vassieva; Yuzhen Ye; Olga Zagnitko; Veronika Vonstein
Journal:  Nucleic Acids Res       Date:  2005-10-07       Impact factor: 16.971

7.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
  7 in total
  8 in total

1.  Twenty-one genome sequences from Pseudomonas species and 19 genome sequences from diverse bacteria isolated from the rhizosphere and endosphere of Populus deltoides.

Authors:  Steven D Brown; Sagar M Utturkar; Dawn M Klingeman; Courtney M Johnson; Stanton L Martin; Miriam L Land; Tse-Yuan S Lu; Christopher W Schadt; Mitchel J Doktycz; Dale A Pelletier
Journal:  J Bacteriol       Date:  2012-11       Impact factor: 3.490

2.  Second Messenger c-di-GMP Modulates Exopolysaccharide Pea-Dependent Phenotypes via Regulation of eppA Expression in Pseudomonas putida.

Authors:  Yujie Xiao; Qingyuan Liang; Meina He; Nianqi Wu; Liang Nie; Wenli Chen; Qiaoyun Huang
Journal:  Appl Environ Microbiol       Date:  2022-01-05       Impact factor: 5.005

3.  Grape Cultivar Features Differentiate the Grape Rhizosphere Microbiota.

Authors:  Lijun Bao; Bo Sun; Yingxue Wei; Nan Xu; Shiwei Zhang; Likun Gu; Zhihui Bai
Journal:  Plants (Basel)       Date:  2022-04-20

4.  Characterization of epiphytic bacterial communities from grapes, leaves, bark and soil of grapevine plants grown, and their relations.

Authors:  Guilherme Martins; Béatrice Lauga; Cécile Miot-Sertier; Anne Mercier; Aline Lonvaud; Marie-Louise Soulas; Guy Soulas; Isabelle Masneuf-Pomarède
Journal:  PLoS One       Date:  2013-08-30       Impact factor: 3.240

5.  Iron Uptake Analysis in a Set of Clinical Isolates of Pseudomonas putida.

Authors:  Lázaro Molina; Valérie A Geoffroy; Ana Segura; Zulema Udaondo; Juan-Luis Ramos
Journal:  Front Microbiol       Date:  2016-12-27       Impact factor: 5.640

6.  High-throughput sequencing of microbial community diversity in soil, grapes, leaves, grape juice and wine of grapevine from China.

Authors:  Yu-Jie Wei; Yun Wu; Yin-Zhuo Yan; Wan Zou; Jie Xue; Wen-Rui Ma; Wei Wang; Ge Tian; Li-Ye Wang
Journal:  PLoS One       Date:  2018-03-22       Impact factor: 3.240

Review 7.  Commonalities and differences of T3SSs in rhizobia and plant pathogenic bacteria.

Authors:  Anastasia P Tampakaki
Journal:  Front Plant Sci       Date:  2014-03-27       Impact factor: 5.753

8.  Bridging the Gap: Type III Secretion Systems in Plant-Beneficial Bacteria.

Authors:  Antoine Zboralski; Adrien Biessy; Martin Filion
Journal:  Microorganisms       Date:  2022-01-15
  8 in total

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