Literature DB >> 22072646

Draft genome sequence of Dietzia alimentaria 72T, belonging to the family Dietziaceae, isolated from a traditional Korean food.

Jandi Kim1, Seong Woon Roh, Jin-Woo Bae.   

Abstract

Actinobacterial strain 72(T), named Dietzia alimentaria, which belongs to the family Dietziaceae, was isolated from a traditional Korean food made from clams. The draft genome sequence of D. alimentaria 72(T) contains 3,352,817 bp, with a G+C content of 67.34%.

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Year:  2011        PMID： 22072646      PMCID： PMC3232881          DOI： 10.1128/JB.06229-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  14 in total

1.  Dietzia alimentaria sp. nov., isolated from a traditional Korean food.

Authors:  Jandi Kim; Seong Woon Roh; Jung-Hye Choi; Mi-Ja Jung; Young-Do Nam; Min-Soo Kim; Eun-Jin Park; Kee-Sun Shin; Jin-Woo Bae
Journal:  Int J Syst Evol Microbiol       Date:  2010-10-15       Impact factor: 2.747

2.  The COG database: a tool for genome-scale analysis of protein functions and evolution.

Authors:  R L Tatusov; M Y Galperin; D A Natale; E V Koonin
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

3.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

4.  Dietzia schimae sp. nov. and Dietzia cercidiphylli sp. nov., from surface-sterilized plant tissues.

Authors:  Jie Li; Guo-Zhen Zhao; Yu-Qin Zhang; Hans-Peter Klenk; Rüdiger Pukall; Sheng Qin; Li-Hua Xu; Wen-Jun Li
Journal:  Int J Syst Evol Microbiol       Date:  2008-11       Impact factor: 2.747

5.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

6.  Dietzia psychralcaliphila sp. nov., a novel, facultatively psychrophilic alkaliphile that grows on hydrocarbons.

Authors:  Isao Yumoto; Akio Nakamura; Hideaki Iwata; Kiyoshi Kojima; Keita Kusumoto; Yoshinobu Nodasaka; Hidetoshi Matsuyama
Journal:  Int J Syst Evol Microbiol       Date:  2002-01       Impact factor: 2.747

7.  Dietzia natronolimnaios sp. nov., a new member of the genus Dietzia isolated from an east African soda lake.

Authors:  A W Duckworth; S Grant; W D Grant; B E Jones; D Meijer
Journal:  Extremophiles       Date:  1998-08       Impact factor: 2.395

8.  Dietzia papillomatosis sp. nov., a novel actinomycete isolated from the skin of an immunocompetent patient with confluent and reticulated papillomatosis.

Authors:  Amanda L Jones; Roland J Koerner; Sivakumar Natarajan; John D Perry; Michael Goodfellow
Journal:  Int J Syst Evol Microbiol       Date:  2008-01       Impact factor: 2.747

9.  Dietzia cinnamea sp. nov., a novel species isolated from a perianal swab of a patient with a bone marrow transplant.

Authors:  A F Yassin; H Hupfer; K P Schaal
Journal:  Int J Syst Evol Microbiol       Date:  2006-03       Impact factor: 2.747

10.  The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes.

Authors:  Ross Overbeek; Tadhg Begley; Ralph M Butler; Jomuna V Choudhuri; Han-Yu Chuang; Matthew Cohoon; Valérie de Crécy-Lagard; Naryttza Diaz; Terry Disz; Robert Edwards; Michael Fonstein; Ed D Frank; Svetlana Gerdes; Elizabeth M Glass; Alexander Goesmann; Andrew Hanson; Dirk Iwata-Reuyl; Roy Jensen; Neema Jamshidi; Lutz Krause; Michael Kubal; Niels Larsen; Burkhard Linke; Alice C McHardy; Folker Meyer; Heiko Neuweger; Gary Olsen; Robert Olson; Andrei Osterman; Vasiliy Portnoy; Gordon D Pusch; Dmitry A Rodionov; Christian Rückert; Jason Steiner; Rick Stevens; Ines Thiele; Olga Vassieva; Yuzhen Ye; Olga Zagnitko; Veronika Vonstein
Journal:  Nucleic Acids Res       Date:  2005-10-07       Impact factor: 16.971
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  4 in total

1.  Complete Genome Sequence of Dietzia sp. Strain WMMA184, a Marine Coral-Associated Bacterium.

Authors:  Doug R Braun; Marc G Chevrette; Deepa Acharya; Cameron R Currie; Scott R Rajski; Kim B Ritchie; Tim S Bugni
Journal:  Genome Announc       Date:  2018-02-01

2.  Draft genome analysis of Dietzia sp. 111N12-1, isolated from the South China Sea with bioremediation activity.

Authors:  Shanjun Yang; Mingjia Yu; Jianming Chen
Journal:  Braz J Microbiol       Date:  2017-03-11       Impact factor: 2.476

3.  ODFM, an omics data resource from microorganisms associated with fermented foods.

Authors:  Tae Woong Whon; Seung Woo Ahn; Sungjin Yang; Joon Yong Kim; Yeon Bee Kim; Yujin Kim; Ji-Man Hong; Hojin Jung; Yoon-E Choi; Se Hee Lee; Seong Woon Roh
Journal:  Sci Data       Date:  2021-04-20       Impact factor: 6.444

4.  The evolution of alkaliphilic biofilm communities in response to extreme alkaline pH values.

Authors:  Christopher J Charles; Simon P Rout; Brian R Jackson; Sally A Boxall; Sirwan Akbar; Paul N Humphreys
Journal:  Microbiologyopen       Date:  2022-08       Impact factor: 3.904
  4 in total

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